Wall clock time and date at job start Tue Mar 31 2020 21:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47294 * 179.97438 * 5 4 3 7 7 C 1.34961 * 125.98060 * 124.71033 * 6 5 4 8 8 C 1.35240 * 107.86283 * 179.89686 * 7 6 5 9 9 C 1.50695 * 126.06858 * 180.11551 * 8 7 6 10 10 C 1.40405 * 107.86660 * 0.37276 * 8 7 6 11 11 N 1.40192 * 125.97147 * 179.80832 * 10 8 7 12 12 C 1.34783 * 119.99695 * 179.97438 * 11 10 8 13 13 O 1.21590 * 120.00086 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99472 * 179.97438 * 12 11 10 15 15 C 1.47064 * 136.06210 * 359.63562 * 14 12 11 16 16 C 1.53752 * 87.88636 * 152.96178 * 15 14 12 17 17 O 1.42897 * 114.39368 * 272.67164 * 16 15 14 18 18 C 1.50702 * 114.26841 * 139.79409 * 16 15 14 19 19 H 1.07999 * 119.99739 * 266.47763 * 18 16 15 20 20 C 1.37878 * 120.00340 * 86.46892 * 18 16 15 21 21 N 1.31514 * 119.99968 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 120.00375 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47148 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47446 * 119.99975 * 22 20 18 25 25 H 1.48503 * 109.47195 * 240.00373 * 22 20 18 26 26 C 1.47071 * 136.05251 * 180.02562 * 14 12 11 27 27 N 1.31211 * 108.05386 * 359.76830 * 10 8 7 28 28 H 1.08999 * 109.47444 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47182 * 300.00413 * 1 2 3 30 30 H 1.08995 * 109.47354 * 59.99869 * 1 2 3 31 31 H 1.09001 * 109.47626 * 60.00343 * 3 2 1 32 32 H 1.09001 * 109.47255 * 300.00084 * 3 2 1 33 33 H 1.09001 * 109.47002 * 299.99477 * 4 3 2 34 34 H 1.08993 * 109.46955 * 59.99914 * 4 3 2 35 35 H 1.09001 * 109.47289 * 299.99953 * 5 4 3 36 36 H 1.09004 * 109.47261 * 59.99697 * 5 4 3 37 37 H 1.08004 * 126.06601 * 0.02562 * 7 6 5 38 38 H 1.08998 * 109.47530 * 270.29691 * 9 8 7 39 39 H 1.09004 * 109.47201 * 30.29873 * 9 8 7 40 40 H 1.09000 * 109.47008 * 150.29546 * 9 8 7 41 41 H 0.97003 * 120.00128 * 359.97438 * 11 10 8 42 42 H 1.09003 * 113.46737 * 267.69327 * 15 14 12 43 43 H 1.08993 * 113.46868 * 38.13069 * 15 14 12 44 44 H 0.96698 * 114.00645 * 273.58872 * 17 16 15 45 45 H 0.96997 * 120.00281 * 179.97438 * 21 20 18 46 46 H 1.08996 * 113.46888 * 321.87085 * 26 14 12 47 47 H 1.08998 * 113.46600 * 92.30600 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 7 5.6182 2.4667 -0.0013 7 6 6.4577 3.0236 -0.8993 8 6 7.7203 2.6855 -0.5522 9 6 8.9783 3.0919 -1.2754 10 6 7.6506 1.8836 0.5982 11 7 8.7406 1.3210 1.2771 12 6 8.5343 0.5672 2.3752 13 8 7.4029 0.3748 2.7768 14 7 9.5822 0.0259 3.0275 15 6 11.0434 0.0177 2.8614 16 6 11.1577 -0.1937 4.3801 17 8 11.1685 1.0134 5.1448 18 6 12.2312 -1.1684 4.7907 19 1 11.9862 -2.2093 4.9419 20 6 13.5261 -0.7314 4.9731 21 7 13.8244 0.5362 4.7892 22 14 14.8568 -1.9397 5.4813 23 1 14.2672 -3.2954 5.6215 24 1 15.9213 -1.9682 4.4462 25 1 15.4401 -1.5165 6.7797 26 6 9.7670 -0.8222 4.2147 27 7 6.3871 1.7535 0.9273 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8575 0.6436 0.8892 34 1 3.8567 0.6439 -0.8908 35 1 3.8358 3.1230 -0.8913 36 1 3.8365 3.1235 0.8887 37 1 6.1720 3.6331 -1.7440 38 1 9.2142 2.3506 -2.0389 39 1 8.8289 4.0636 -1.7463 40 1 9.8018 3.1557 -0.5641 41 1 9.6432 1.4742 0.9565 42 1 11.4091 -0.8265 2.2769 43 1 11.4471 0.9718 2.5229 44 1 12.0460 1.4066 5.2470 45 1 14.7353 0.8437 4.9178 46 1 9.0831 -0.5837 5.0293 47 1 9.7964 -1.8876 3.9867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261674590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:54 Heat of formation + Delta-G solvation = -21.241034 kcal Electronic energy + Delta-G solvation = -29026.202791 eV Core-core repulsion = 24826.090587 eV Total energy + Delta-G solvation = -4200.112204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.40721 -41.33608 -39.46530 -38.99295 -36.48183 -35.90484 -34.95482 -34.11923 -32.84931 -31.67847 -30.13752 -28.37674 -27.28001 -27.05945 -26.83786 -25.36258 -23.52153 -22.61128 -21.75808 -21.02957 -20.19593 -19.48636 -18.67035 -18.15415 -17.60749 -17.26190 -17.11629 -16.92168 -16.70990 -16.34391 -16.03799 -15.72828 -15.66652 -15.23662 -15.04814 -14.61207 -14.49142 -14.24386 -14.04761 -13.83947 -13.79850 -13.40916 -13.14129 -13.11568 -12.89473 -12.80122 -12.74186 -12.62507 -12.22655 -12.16614 -12.14619 -12.10488 -11.79121 -11.73062 -11.26079 -11.00691 -10.67368 -10.66457 -10.27123 -9.88112 -9.51992 -8.96887 -8.26917 -6.43674 0.96826 1.09803 1.47083 1.51916 1.56330 1.62548 1.80694 2.35358 2.41762 2.71830 2.87651 2.98385 3.58109 3.71220 3.84394 3.99850 4.06426 4.10090 4.16566 4.32688 4.37462 4.42416 4.44296 4.46544 4.51838 4.53898 4.58711 4.61092 4.70969 4.81439 4.82909 4.87843 4.89720 4.98212 5.00567 5.11645 5.22577 5.24094 5.34111 5.73732 5.80234 5.89398 5.97979 6.18526 6.27510 6.62643 6.77892 7.04565 7.29381 7.47972 7.49908 8.79785 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.002217 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.962467 B =12627.272376 C =13820.062422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.428 6.428 3 C 0.068 3.932 4 C -0.127 4.127 5 C 0.142 3.858 6 N -0.377 5.377 7 C 0.087 3.913 8 C -0.273 4.273 9 C -0.067 4.067 10 C 0.290 3.710 11 N -0.640 5.640 12 C 0.719 3.281 13 O -0.605 6.605 14 N -0.656 5.656 15 C 0.087 3.913 16 C 0.222 3.778 17 O -0.586 6.586 18 C -0.549 4.549 19 H 0.076 0.924 20 C 0.032 3.968 21 N -0.917 5.917 22 Si 0.972 3.028 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.283 1.283 26 C 0.129 3.871 27 N -0.333 5.333 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.151 0.849 36 H 0.087 0.913 37 H 0.230 0.770 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.424 0.576 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.389 0.611 45 H 0.277 0.723 46 H 0.050 0.950 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.286 7.587 -17.571 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.348 6.348 3 C -0.008 4.008 4 C -0.165 4.165 5 C 0.022 3.978 6 N -0.161 5.161 7 C -0.059 4.059 8 C -0.286 4.286 9 C -0.124 4.124 10 C 0.033 3.967 11 N -0.292 5.292 12 C 0.422 3.578 13 O -0.483 6.483 14 N -0.394 5.394 15 C -0.036 4.036 16 C 0.181 3.819 17 O -0.399 6.399 18 C -0.587 4.587 19 H 0.094 0.906 20 C -0.169 4.169 21 N -0.558 5.558 22 Si 0.798 3.202 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.209 1.209 26 C 0.006 3.994 27 N -0.162 5.162 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.169 0.831 36 H 0.105 0.895 37 H 0.247 0.753 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.262 0.738 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.245 0.755 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.599 6.868 -16.478 25.780 hybrid contribution 2.141 -0.055 0.087 2.143 sum -16.458 6.813 -16.390 24.206 Atomic orbital electron populations 1.22931 0.79077 1.03725 1.01240 1.87864 1.21924 1.29293 1.95705 1.22459 0.91529 0.84600 1.02252 1.21654 0.95009 0.97369 1.02489 1.21813 0.72452 0.97104 1.06413 1.48624 1.07293 1.39430 1.20727 1.22998 0.88055 0.98689 0.96154 1.20142 0.98212 1.10292 0.99988 1.20063 0.91382 1.02300 0.98694 1.19342 0.87233 0.96600 0.93556 1.41731 1.08367 1.52015 1.27129 1.15487 0.83165 0.79311 0.79886 1.90919 1.22074 1.66361 1.68910 1.48772 1.06809 1.52704 1.31067 1.24078 0.76138 1.01322 1.02071 1.19834 0.91068 0.83906 0.87124 1.86047 1.37823 1.41288 1.74780 1.21658 0.93045 0.95607 1.48397 0.90620 1.25778 1.00578 0.97217 0.93295 1.69328 1.21585 1.15587 1.49289 0.85279 0.78231 0.78989 0.77742 1.19112 1.20109 1.20854 1.23263 0.96267 0.95078 0.84756 1.77986 1.02082 1.20922 1.15205 0.89164 0.93209 0.92132 0.92102 0.89749 0.94084 0.91589 0.83148 0.89456 0.75341 0.91293 0.89109 0.93027 0.73763 0.88625 0.91772 0.75452 0.91310 0.93107 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.43 -9.17 10.70 -148.98 -1.59 -10.76 16 3 C 0.07 1.06 5.94 71.98 0.43 1.49 16 4 C -0.13 -2.69 5.77 30.60 0.18 -2.51 16 5 C 0.14 2.32 6.51 86.38 0.56 2.88 16 6 N -0.38 -9.64 3.68 -348.12 -1.28 -10.92 16 7 C 0.09 1.67 11.35 83.52 0.95 2.62 16 8 C -0.27 -6.85 6.12 -20.03 -0.12 -6.97 16 9 C -0.07 -1.18 10.22 71.23 0.73 -0.45 16 10 C 0.29 10.46 7.78 133.31 1.04 11.50 16 11 N -0.64 -24.48 5.46 -321.22 -1.75 -26.23 16 12 C 0.72 33.68 8.76 179.05 1.57 35.25 16 13 O -0.60 -32.93 15.84 -4.00 -0.06 -32.99 16 14 N -0.66 -29.76 3.69 -876.44 -3.23 -32.99 16 15 C 0.09 3.72 7.72 83.27 0.64 4.37 16 16 C 0.22 10.89 1.58 -11.11 -0.02 10.87 16 17 O -0.59 -31.49 13.55 -148.98 -2.02 -33.51 16 18 C -0.55 -27.34 8.70 25.60 0.22 -27.12 16 19 H 0.08 3.65 7.81 -2.91 -0.02 3.63 16 20 C 0.03 1.55 5.39 84.65 0.46 2.00 16 21 N -0.92 -45.94 11.01 21.45 0.24 -45.71 16 22 Si 0.97 39.11 29.54 68.60 2.03 41.14 16 23 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 24 H -0.28 -10.78 7.11 99.48 0.71 -10.08 16 25 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 26 C 0.13 5.98 8.02 83.18 0.67 6.65 16 27 N -0.33 -12.93 10.64 -54.43 -0.58 -13.51 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.15 0.80 8.07 -2.39 -0.02 0.78 16 36 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.23 1.56 8.06 -2.91 -0.02 1.53 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.05 0.99 7.70 -2.39 -0.02 0.98 16 41 H 0.42 13.70 7.93 -92.71 -0.74 12.97 16 42 H 0.10 3.80 8.10 -2.39 -0.02 3.78 16 43 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.39 20.96 6.32 -74.06 -0.47 20.49 16 45 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 46 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.10 4.30 8.10 -2.39 -0.02 4.28 16 Total: -1.00 -78.31 398.39 0.08 -78.23 By element: Atomic # 1 Polarization: 45.31 SS G_CDS: -0.21 Total: 45.10 kcal Atomic # 6 Polarization: 33.61 SS G_CDS: 8.55 Total: 42.16 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -6.61 Total: -129.36 kcal Atomic # 8 Polarization: -73.59 SS G_CDS: -3.68 Total: -77.27 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -78.31 0.08 -78.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261674590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.986 kcal (2) G-P(sol) polarization free energy of solvation -78.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds