Wall clock time and date at job start Tue Mar 31 2020 22:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 O 1.34250 * 126.52594 * 270.03105 * 3 2 1 5 5 C 1.34048 * 108.22751 * 180.02562 * 4 3 2 6 6 N 1.29936 * 109.24385 * 359.97438 * 5 4 3 7 7 C 1.36067 * 108.47493 * 359.73887 * 6 5 4 8 8 C 1.47422 * 126.44967 * 180.30551 * 7 6 5 9 9 O 1.21616 * 119.99676 * 180.14729 * 8 7 6 10 10 N 1.34774 * 120.00209 * 0.13954 * 8 7 6 11 11 C 1.46499 * 120.00124 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46946 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.46907 * 304.99360 * 12 11 10 14 14 C 1.52996 * 109.47317 * 64.99704 * 12 11 10 15 15 C 1.52996 * 109.47011 * 184.99939 * 12 11 10 16 16 N 1.46897 * 109.47458 * 174.99737 * 15 12 11 17 17 C 1.46896 * 111.00525 * 179.97438 * 16 15 12 18 18 C 1.50695 * 109.47392 * 180.02562 * 17 16 15 19 19 O 1.21290 * 120.00126 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00073 * 180.02562 * 18 17 16 21 21 C 1.37106 * 119.99854 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00075 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99795 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00021 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00110 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46785 * 60.00457 * 25 23 21 27 27 H 1.48502 * 109.47200 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47518 * 300.00781 * 25 23 21 29 29 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 32 32 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 33 33 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 34 34 H 1.08007 * 125.38098 * 180.02562 * 5 4 3 35 35 H 0.97006 * 119.99904 * 0.02562 * 10 8 7 36 36 H 1.09003 * 109.47007 * 299.99599 * 11 10 8 37 37 H 1.08997 * 109.47038 * 59.99963 * 11 10 8 38 38 H 1.09003 * 109.47002 * 180.02562 * 14 12 11 39 39 H 1.09004 * 109.47369 * 299.99831 * 14 12 11 40 40 H 1.09002 * 109.47412 * 59.99966 * 14 12 11 41 41 H 1.08999 * 109.47176 * 295.00093 * 15 12 11 42 42 H 1.09000 * 109.47301 * 54.99376 * 15 12 11 43 43 H 1.00904 * 110.99867 * 303.95646 * 16 15 12 44 44 H 1.09001 * 109.46762 * 299.99875 * 17 16 15 45 45 H 1.08996 * 109.47264 * 59.99966 * 17 16 15 46 46 H 0.96995 * 120.00163 * 359.97438 * 20 18 17 47 47 H 0.97001 * 119.99953 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2982 2.1744 -1.0788 5 6 2.7232 3.3740 -0.6579 6 7 2.7308 3.3941 0.6412 7 6 2.2970 2.1863 1.0936 8 6 2.1455 1.7820 2.5032 9 8 1.7481 0.6655 2.7761 10 7 2.4475 2.6496 3.4894 11 6 2.2975 2.2476 4.8901 12 6 2.7032 3.4087 5.8002 13 1 3.7125 3.7333 5.5469 14 6 1.7295 4.5728 5.6066 15 6 2.6661 2.9501 7.2593 16 7 3.1697 4.0257 8.1237 17 6 3.1481 3.6204 9.5355 18 6 3.6698 4.7469 10.3897 19 8 4.0252 5.7852 9.8732 20 7 3.7426 4.6003 11.7275 21 6 4.2178 5.6251 12.5045 22 1 4.5341 6.5496 12.0446 23 6 4.2922 5.4741 13.8838 24 7 3.9077 4.3490 14.4434 25 14 4.9403 6.8700 14.9425 26 1 4.0840 8.0694 14.7586 27 1 4.9188 6.4600 16.3696 28 1 6.3336 7.1904 14.5408 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.0127 4.1947 -1.2977 35 1 2.7643 3.5403 3.2716 36 1 1.2580 1.9818 5.0825 37 1 2.9358 1.3874 5.0916 38 1 2.0188 5.4002 6.2546 39 1 1.7559 4.8996 4.5670 40 1 0.7202 4.2483 5.8598 41 1 1.6404 2.7096 7.5386 42 1 3.2918 2.0655 7.3781 43 1 4.0959 4.3113 7.8433 44 1 2.1255 3.3849 9.8303 45 1 3.7769 2.7403 9.6705 46 1 3.4588 3.7698 12.1405 47 1 3.9601 4.2435 15.4062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267983915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:36 Heat of formation + Delta-G solvation = -92.927495 kcal Electronic energy + Delta-G solvation = -27892.130835 eV Core-core repulsion = 23688.910073 eV Total energy + Delta-G solvation = -4203.220762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.47375 -40.71844 -40.14747 -38.30427 -36.25404 -35.93636 -35.64821 -35.05100 -33.42776 -33.11821 -30.37536 -28.83922 -27.85822 -26.67469 -25.44799 -24.62695 -24.06590 -22.43827 -21.74752 -21.36038 -20.90779 -19.89898 -19.19859 -17.89201 -17.81698 -17.26255 -17.10262 -16.95506 -16.56667 -16.33077 -16.03132 -15.91382 -15.62787 -15.46312 -15.16972 -15.13122 -14.57629 -14.42642 -14.39002 -13.93998 -13.59017 -13.55114 -13.40712 -13.16513 -13.02310 -12.83639 -12.69908 -12.44140 -12.42828 -12.22830 -12.12494 -12.03414 -11.96648 -11.81524 -11.72503 -11.49402 -11.20191 -10.33752 -10.26944 -10.01044 -9.90261 -9.28894 -8.45950 -5.94927 0.02103 1.03321 1.40462 1.42211 1.53230 1.54718 2.05991 2.06687 2.19852 2.30174 2.94094 3.10603 3.21336 3.52972 3.54271 3.73315 3.85185 3.98031 4.04895 4.08608 4.23220 4.29104 4.33859 4.48056 4.49594 4.55085 4.58938 4.62383 4.72890 4.78065 4.82163 4.93414 4.95535 5.06193 5.09062 5.16371 5.21864 5.26914 5.38715 5.41177 5.50129 5.89336 6.10978 6.25632 6.42174 6.56233 6.60803 7.04940 7.13022 7.57017 8.12290 8.71142 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034227 B = 0.001479 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.878709 B =18920.997270 C =19497.980621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.047 4.047 3 C 0.046 3.954 4 O -0.198 6.198 5 C 0.195 3.805 6 N -0.495 5.495 7 C -0.104 4.104 8 C 0.596 3.404 9 O -0.559 6.559 10 N -0.704 5.704 11 C 0.132 3.868 12 C -0.088 4.088 13 H 0.080 0.920 14 C -0.136 4.136 15 C 0.068 3.932 16 N -0.678 5.678 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.272 1.272 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.303 0.697 35 H 0.414 0.586 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.344 0.656 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 -9.589 -31.935 33.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 C -0.012 4.012 4 O -0.085 6.085 5 C -0.033 4.033 6 N -0.223 5.223 7 C -0.222 4.222 8 C 0.383 3.617 9 O -0.439 6.439 10 N -0.354 5.354 11 C 0.008 3.992 12 C -0.107 4.107 13 H 0.098 0.902 14 C -0.193 4.193 15 C -0.061 4.061 16 N -0.311 5.311 17 C -0.067 4.067 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.466 4.466 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.197 1.197 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.318 0.682 35 H 0.250 0.750 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.163 0.837 44 H 0.122 0.878 45 H 0.084 0.916 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.798 -8.917 -31.429 33.180 hybrid contribution 0.965 -0.186 0.612 1.157 sum -4.834 -9.103 -30.817 32.495 Atomic orbital electron populations 1.21676 0.92492 1.03806 1.01740 1.20451 0.97482 0.84593 1.05875 1.24108 0.97610 0.96140 0.83294 1.84418 1.63665 1.24625 1.35775 1.29162 0.96105 0.87182 0.90888 1.70723 1.18726 1.21006 1.11873 1.21431 1.12737 0.92768 0.95307 1.16929 0.77175 0.84267 0.83372 1.90771 1.48268 1.21034 1.83803 1.45763 1.66377 1.17441 1.05851 1.21361 1.02053 0.97019 0.78778 1.21202 1.00872 0.95140 0.93494 0.90198 1.21693 0.98632 0.97889 1.01080 1.21950 1.01210 0.91740 0.91190 1.60018 1.31667 1.38781 1.00590 1.21523 1.02450 0.94030 0.88729 1.20896 0.83427 0.90265 0.82913 1.90486 1.55027 1.31916 1.73514 1.41934 1.57195 1.16533 1.05421 1.19648 1.41078 0.96539 0.89312 0.90293 1.26044 0.97231 1.00253 0.97722 1.69670 1.47678 1.26157 1.12585 0.84981 0.78686 0.77644 0.76967 1.19757 1.19481 1.19684 0.91766 0.89461 0.93928 0.87371 0.87908 0.68224 0.74952 0.91082 0.91134 0.92676 0.92508 0.92765 0.90054 0.93810 0.83743 0.87841 0.91562 0.76975 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.89 71.98 0.71 -0.93 16 2 C -0.05 -0.60 5.92 29.85 0.18 -0.43 16 3 C 0.05 0.75 6.69 25.19 0.17 0.92 16 4 O -0.20 -2.53 10.73 0.47 0.01 -2.52 16 5 C 0.20 1.88 13.19 130.52 1.72 3.60 16 6 N -0.49 -8.45 11.06 -305.14 -3.37 -11.82 16 7 C -0.10 -2.08 6.99 40.41 0.28 -1.80 16 8 C 0.60 13.59 7.81 86.66 0.68 14.27 16 9 O -0.56 -14.85 14.81 -4.08 -0.06 -14.91 16 10 N -0.70 -13.85 5.28 -466.36 -2.46 -16.31 16 11 C 0.13 2.48 5.07 86.38 0.44 2.91 16 12 C -0.09 -1.70 2.57 -10.79 -0.03 -1.73 16 13 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 14 C -0.14 -2.84 8.95 71.98 0.64 -2.20 16 15 C 0.07 1.51 5.07 86.30 0.44 1.94 16 16 N -0.68 -20.68 5.58 -517.97 -2.89 -23.57 16 17 C 0.07 2.21 6.17 85.56 0.53 2.74 16 18 C 0.44 20.88 7.82 87.66 0.69 21.56 16 19 O -0.62 -34.61 15.78 -3.06 -0.05 -34.65 16 20 N -0.57 -29.63 5.29 -306.99 -1.62 -31.26 16 21 C -0.34 -19.25 9.68 84.04 0.81 -18.43 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 24 N -0.92 -49.88 13.05 21.66 0.28 -49.60 16 25 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 1.66 6.50 -2.39 -0.02 1.65 16 34 H 0.30 -0.69 8.06 -2.91 -0.02 -0.72 16 35 H 0.41 7.48 7.38 -92.70 -0.68 6.80 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.43 7.75 -2.39 -0.02 1.41 16 39 H 0.06 1.05 7.18 -2.38 -0.02 1.03 16 40 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.34 11.03 8.43 -89.69 -0.76 10.28 16 44 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 45 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 47 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -74.85 400.15 -1.57 -76.41 By element: Atomic # 1 Polarization: 42.01 SS G_CDS: -1.15 Total: 40.86 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 7.73 Total: 22.22 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -10.07 Total: -132.56 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -0.10 Total: -52.09 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -74.85 -1.57 -76.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267983915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.514 kcal (2) G-P(sol) polarization free energy of solvation -74.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds