Wall clock time and date at job start Tue Mar 31 2020 22:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50688 * 109.47181 * 2 1 4 4 O 1.34261 * 126.53052 * 270.18989 * 3 2 1 5 5 C 1.34044 * 108.23002 * 180.26638 * 4 3 2 6 6 N 1.29940 * 109.24511 * 359.73356 * 5 4 3 7 7 C 1.36067 * 108.47329 * 359.97438 * 6 5 4 8 8 C 1.47418 * 126.44588 * 179.97438 * 7 6 5 9 9 O 1.21619 * 120.00156 * 180.02562 * 8 7 6 10 10 N 1.34778 * 119.99988 * 0.03219 * 8 7 6 11 11 C 1.46500 * 120.00010 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47515 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.47160 * 54.99596 * 12 11 10 14 14 C 1.53006 * 109.46626 * 294.99964 * 12 11 10 15 15 C 1.52997 * 109.47592 * 174.99929 * 12 11 10 16 16 N 1.46900 * 109.47171 * 184.99707 * 15 12 11 17 17 C 1.46904 * 110.99705 * 179.97438 * 16 15 12 18 18 C 1.50704 * 109.46884 * 179.97438 * 17 16 15 19 19 O 1.21290 * 119.99639 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99845 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99512 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00376 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99866 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00377 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99947 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47262 * 89.99643 * 25 23 21 27 27 H 1.48501 * 109.47131 * 209.99913 * 25 23 21 28 28 H 1.48508 * 109.46785 * 329.99735 * 25 23 21 29 29 H 1.09000 * 109.47349 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46606 * 299.99997 * 1 2 3 31 31 H 1.08993 * 109.47109 * 59.99781 * 1 2 3 32 32 H 1.09001 * 109.46606 * 240.00002 * 2 1 3 33 33 H 1.09002 * 109.47053 * 120.00335 * 2 1 3 34 34 H 1.08007 * 125.37988 * 179.69417 * 5 4 3 35 35 H 0.96996 * 119.99957 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47421 * 59.99790 * 11 10 8 37 37 H 1.09000 * 109.47046 * 299.99771 * 11 10 8 38 38 H 1.09001 * 109.46998 * 179.97438 * 14 12 11 39 39 H 1.09000 * 109.47050 * 299.99699 * 14 12 11 40 40 H 1.09001 * 109.46801 * 59.99811 * 14 12 11 41 41 H 1.09001 * 109.46992 * 305.00257 * 15 12 11 42 42 H 1.08998 * 109.47097 * 64.99445 * 15 12 11 43 43 H 1.00898 * 110.99685 * 56.04556 * 16 15 12 44 44 H 1.08998 * 109.47285 * 300.00060 * 17 16 15 45 45 H 1.09003 * 109.47029 * 60.00806 * 17 16 15 46 46 H 0.96993 * 119.99907 * 0.02562 * 20 18 17 47 47 H 0.97003 * 119.99681 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2954 2.1754 -1.0788 5 6 2.7265 3.3728 -0.6580 6 7 2.7358 3.3922 0.6413 7 6 2.3019 2.1845 1.0936 8 6 2.1585 1.7774 2.5032 9 8 1.7579 0.6620 2.7763 10 7 2.4710 2.6413 3.4893 11 6 2.3279 2.2369 4.8901 12 6 2.7451 3.3939 5.8002 13 1 2.1700 4.2836 5.5437 14 6 4.2365 3.6788 5.6115 15 6 2.4784 3.0172 7.2589 16 7 2.7662 4.1699 8.1228 17 6 2.5202 3.8445 9.5341 18 6 2.8261 5.0481 10.3878 19 8 3.2107 6.0759 9.8714 20 7 2.6723 4.9823 11.7251 21 6 2.9501 6.0774 12.5017 22 1 3.2918 6.9929 12.0418 23 6 2.7911 6.0098 13.8804 24 7 3.0569 7.0597 14.6248 25 14 2.1994 4.4266 14.6759 26 1 3.3686 3.5777 15.0185 27 1 1.4410 4.7469 15.9118 28 1 1.3180 3.6965 13.7295 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0204 4.1919 -1.2977 35 1 2.7908 3.5308 3.2716 36 1 2.9632 1.3731 5.0857 37 1 1.2884 1.9758 5.0885 38 1 4.5337 4.5033 6.2596 39 1 4.8117 2.7891 5.8680 40 1 4.4265 3.9472 4.5723 41 1 1.4338 2.7283 7.3744 42 1 3.1195 2.1822 7.5416 43 1 2.2307 4.9767 7.8394 44 1 1.4757 3.5617 9.6650 45 1 3.1614 3.0152 9.8328 46 1 2.3651 4.1602 12.1381 47 1 2.9462 7.0123 15.5873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267983924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:41 Heat of formation + Delta-G solvation = -57.473834 kcal Electronic energy + Delta-G solvation = -27944.892858 eV Core-core repulsion = 23743.209482 eV Total energy + Delta-G solvation = -4201.683376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.92020 -39.90435 -38.54267 -37.30497 -35.38437 -35.03274 -34.49026 -33.89397 -32.35506 -31.62782 -29.79713 -27.58444 -27.06825 -25.25838 -24.42287 -23.92586 -22.94375 -21.82234 -20.94062 -20.49289 -19.36005 -18.62478 -18.21100 -17.31727 -16.65819 -16.47728 -15.97047 -15.86878 -15.44395 -15.37356 -15.10654 -14.93109 -14.47904 -14.41583 -14.03195 -13.93110 -13.55902 -13.31052 -13.18966 -13.08725 -12.66888 -12.58864 -12.22808 -12.07344 -12.03150 -11.82738 -11.77282 -11.71519 -11.23659 -11.21133 -11.09338 -11.06641 -10.89901 -10.58978 -10.41145 -9.96990 -9.56583 -9.53531 -9.24230 -8.58462 -8.18669 -8.12574 -6.30507 -3.81922 0.64378 1.59199 2.06938 2.78664 2.94443 3.03071 3.07670 3.15664 3.57550 3.75085 4.07339 4.08597 4.11776 4.35449 4.56944 4.68011 4.70001 4.73424 4.80754 4.85652 5.00945 5.05896 5.22658 5.28896 5.30444 5.37791 5.40975 5.50360 5.57700 5.62675 5.64480 5.66532 5.72330 5.79976 5.82321 5.90756 5.94890 6.04638 6.19286 6.39886 6.89587 7.08620 7.24324 7.56800 7.59325 7.83339 8.15222 8.60540 8.95672 9.43208 9.83588 10.82603 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.001548 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.751264 B =18086.993370 C =18754.978132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C 0.047 3.953 4 O -0.199 6.199 5 C 0.176 3.824 6 N -0.463 5.463 7 C -0.078 4.078 8 C 0.602 3.398 9 O -0.535 6.535 10 N -0.708 5.708 11 C 0.124 3.876 12 C -0.100 4.100 13 H 0.078 0.922 14 C -0.141 4.141 15 C 0.067 3.933 16 N -0.666 5.666 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.256 0.744 35 H 0.410 0.590 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.350 0.650 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 -15.294 -31.399 35.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 C -0.009 4.009 4 O -0.085 6.085 5 C -0.053 4.053 6 N -0.192 5.192 7 C -0.197 4.197 8 C 0.387 3.613 9 O -0.412 6.412 10 N -0.359 5.359 11 C 0.001 3.999 12 C -0.119 4.119 13 H 0.096 0.904 14 C -0.198 4.198 15 C -0.064 4.064 16 N -0.298 5.298 17 C -0.085 4.085 18 C 0.236 3.764 19 O -0.446 6.446 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.272 0.728 35 H 0.246 0.754 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.170 0.830 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.093 -14.894 -30.895 34.437 hybrid contribution -1.366 -0.995 0.279 1.713 sum -4.460 -15.889 -30.616 34.780 Atomic orbital electron populations 1.21709 0.92926 1.03063 1.02490 1.20412 0.97211 0.85315 1.05523 1.23851 0.98217 0.95526 0.83338 1.84390 1.63514 1.24295 1.36303 1.28050 0.98873 0.87141 0.91202 1.70751 1.17138 1.21074 1.10257 1.21482 1.10993 0.91673 0.95588 1.16681 0.77559 0.84473 0.82585 1.90794 1.47043 1.20142 1.83267 1.45790 1.66548 1.17662 1.05929 1.21461 1.01813 0.97705 0.78964 1.21344 0.98697 0.97671 0.94237 0.90368 1.21768 0.94001 1.03021 1.01053 1.21893 0.98810 0.94348 0.91301 1.60032 1.62769 1.06137 1.00881 1.21703 0.99581 0.98062 0.89126 1.19716 0.84507 0.89610 0.82593 1.90563 1.49700 1.31949 1.72431 1.42206 1.60984 1.13848 1.06010 1.19435 1.42318 0.93048 0.88598 0.86288 1.25040 0.97721 0.97416 0.95986 1.69625 1.47900 1.28732 1.05895 0.86667 0.79385 0.83331 0.79964 1.19595 1.20203 1.19534 0.90909 0.91744 0.92588 0.89651 0.86414 0.72837 0.75356 0.90898 0.91203 0.90336 0.92792 0.93525 0.95211 0.90661 0.83033 0.93756 0.89445 0.79687 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.90 37.16 0.37 -0.50 16 2 C -0.05 -0.31 5.93 -27.89 -0.17 -0.48 16 3 C 0.05 0.40 6.69 -35.08 -0.23 0.17 16 4 O -0.20 -1.42 10.73 6.51 0.07 -1.35 16 5 C 0.18 1.03 13.19 51.96 0.69 1.71 16 6 N -0.46 -4.13 11.06 -11.48 -0.13 -4.26 16 7 C -0.08 -0.77 6.99 -83.02 -0.58 -1.35 16 8 C 0.60 6.65 7.81 -12.52 -0.10 6.55 16 9 O -0.53 -6.82 14.81 5.26 0.08 -6.74 16 10 N -0.71 -6.85 5.28 -61.38 -0.32 -7.17 16 11 C 0.12 1.16 5.06 -4.04 -0.02 1.14 16 12 C -0.10 -0.96 2.57 -90.62 -0.23 -1.20 16 13 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 14 C -0.14 -1.45 8.95 37.16 0.33 -1.12 16 15 C 0.07 0.73 5.07 -3.83 -0.02 0.71 16 16 N -0.67 -9.86 5.58 -115.05 -0.64 -10.50 16 17 C 0.05 0.78 6.17 -4.97 -0.03 0.75 16 18 C 0.45 10.17 7.82 -10.98 -0.09 10.09 16 19 O -0.56 -15.10 15.78 5.55 0.09 -15.01 16 20 N -0.59 -14.09 5.09 -10.96 -0.06 -14.15 16 21 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.82 13.96 55.50 0.77 -25.04 16 25 Si 0.88 19.41 27.74 -169.99 -4.71 14.69 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.12 0.91 6.49 -51.93 -0.34 0.58 16 34 H 0.26 0.16 8.06 -52.48 -0.42 -0.26 16 35 H 0.41 3.68 7.38 -40.82 -0.30 3.37 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.98 7.75 -51.93 -0.40 0.58 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.43 7.18 -51.93 -0.37 0.06 16 41 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.35 5.40 8.43 -39.29 -0.33 5.07 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.37 7.74 5.76 -40.82 -0.24 7.51 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 397.02 15.07 5.98 5.98 Total: -1.00 -35.28 397.02 -6.23 -41.51 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -7.03 Total: 13.36 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -0.33 Total: 8.68 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -0.37 Total: -61.12 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.24 Total: -23.10 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.28 -6.23 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267983924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.963 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds