Wall clock time and date at job start Tue Mar 31 2020 22:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50688 * 109.47181 * 2 1 4 4 O 1.34261 * 126.53052 * 270.18989 * 3 2 1 5 5 C 1.34044 * 108.23002 * 180.26638 * 4 3 2 6 6 N 1.29940 * 109.24511 * 359.73356 * 5 4 3 7 7 C 1.36067 * 108.47329 * 359.97438 * 6 5 4 8 8 C 1.47418 * 126.44588 * 179.97438 * 7 6 5 9 9 O 1.21619 * 120.00156 * 180.02562 * 8 7 6 10 10 N 1.34778 * 119.99988 * 0.03219 * 8 7 6 11 11 C 1.46500 * 120.00010 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47515 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.47160 * 54.99596 * 12 11 10 14 14 C 1.53006 * 109.46626 * 294.99964 * 12 11 10 15 15 C 1.52997 * 109.47592 * 174.99929 * 12 11 10 16 16 N 1.46900 * 109.47171 * 184.99707 * 15 12 11 17 17 C 1.46904 * 110.99705 * 179.97438 * 16 15 12 18 18 C 1.50704 * 109.46884 * 179.97438 * 17 16 15 19 19 O 1.21290 * 119.99639 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99845 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99512 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00376 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99866 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00377 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99947 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47262 * 89.99643 * 25 23 21 27 27 H 1.48501 * 109.47131 * 209.99913 * 25 23 21 28 28 H 1.48508 * 109.46785 * 329.99735 * 25 23 21 29 29 H 1.09000 * 109.47349 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46606 * 299.99997 * 1 2 3 31 31 H 1.08993 * 109.47109 * 59.99781 * 1 2 3 32 32 H 1.09001 * 109.46606 * 240.00002 * 2 1 3 33 33 H 1.09002 * 109.47053 * 120.00335 * 2 1 3 34 34 H 1.08007 * 125.37988 * 179.69417 * 5 4 3 35 35 H 0.96996 * 119.99957 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47421 * 59.99790 * 11 10 8 37 37 H 1.09000 * 109.47046 * 299.99771 * 11 10 8 38 38 H 1.09001 * 109.46998 * 179.97438 * 14 12 11 39 39 H 1.09000 * 109.47050 * 299.99699 * 14 12 11 40 40 H 1.09001 * 109.46801 * 59.99811 * 14 12 11 41 41 H 1.09001 * 109.46992 * 305.00257 * 15 12 11 42 42 H 1.08998 * 109.47097 * 64.99445 * 15 12 11 43 43 H 1.00898 * 110.99685 * 56.04556 * 16 15 12 44 44 H 1.08998 * 109.47285 * 300.00060 * 17 16 15 45 45 H 1.09003 * 109.47029 * 60.00806 * 17 16 15 46 46 H 0.96993 * 119.99907 * 0.02562 * 20 18 17 47 47 H 0.97003 * 119.99681 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2954 2.1754 -1.0788 5 6 2.7265 3.3728 -0.6580 6 7 2.7358 3.3922 0.6413 7 6 2.3019 2.1845 1.0936 8 6 2.1585 1.7774 2.5032 9 8 1.7579 0.6620 2.7763 10 7 2.4710 2.6413 3.4893 11 6 2.3279 2.2369 4.8901 12 6 2.7451 3.3939 5.8002 13 1 2.1700 4.2836 5.5437 14 6 4.2365 3.6788 5.6115 15 6 2.4784 3.0172 7.2589 16 7 2.7662 4.1699 8.1228 17 6 2.5202 3.8445 9.5341 18 6 2.8261 5.0481 10.3878 19 8 3.2107 6.0759 9.8714 20 7 2.6723 4.9823 11.7251 21 6 2.9501 6.0774 12.5017 22 1 3.2918 6.9929 12.0418 23 6 2.7911 6.0098 13.8804 24 7 3.0569 7.0597 14.6248 25 14 2.1994 4.4266 14.6759 26 1 3.3686 3.5777 15.0185 27 1 1.4410 4.7469 15.9118 28 1 1.3180 3.6965 13.7295 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0204 4.1919 -1.2977 35 1 2.7908 3.5308 3.2716 36 1 2.9632 1.3731 5.0857 37 1 1.2884 1.9758 5.0885 38 1 4.5337 4.5033 6.2596 39 1 4.8117 2.7891 5.8680 40 1 4.4265 3.9472 4.5723 41 1 1.4338 2.7283 7.3744 42 1 3.1195 2.1822 7.5416 43 1 2.2307 4.9767 7.8394 44 1 1.4757 3.5617 9.6650 45 1 3.1614 3.0152 9.8328 46 1 2.3651 4.1602 12.1381 47 1 2.9462 7.0123 15.5873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267983924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:40 Heat of formation + Delta-G solvation = -88.247320 kcal Electronic energy + Delta-G solvation = -27946.227297 eV Core-core repulsion = 23743.209482 eV Total energy + Delta-G solvation = -4203.017815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.47391 -40.71879 -40.28815 -38.31433 -36.27264 -35.94833 -35.67508 -35.05444 -33.76613 -33.28023 -30.37974 -28.97001 -27.85406 -26.60666 -25.38403 -24.61031 -24.01826 -22.43643 -21.73804 -21.39416 -21.11878 -20.22535 -19.19136 -17.88974 -17.80908 -17.27266 -17.08729 -17.01209 -16.72824 -16.37087 -15.96271 -15.84771 -15.57514 -15.47917 -15.17866 -14.93662 -14.58658 -14.50355 -14.39799 -14.34759 -13.83704 -13.57939 -13.46757 -13.22594 -13.02488 -12.86946 -12.70090 -12.44314 -12.40875 -12.23656 -12.02779 -11.99922 -11.93938 -11.82030 -11.71282 -11.50785 -11.20120 -10.42800 -10.26651 -10.24235 -9.90126 -9.28525 -8.40966 -6.01893 0.02012 1.03067 1.30725 1.36364 1.45014 1.54723 1.96705 2.06799 2.19861 2.23481 2.75703 3.09687 3.15481 3.42301 3.54174 3.73353 3.85571 3.98721 4.04638 4.08498 4.18626 4.23108 4.29206 4.45088 4.49665 4.54866 4.56176 4.63402 4.73267 4.78179 4.82554 4.93290 4.96387 5.06767 5.08857 5.16210 5.21869 5.27120 5.39341 5.50485 5.53109 5.91092 6.05900 6.25535 6.40501 6.56029 6.60402 6.88613 7.04945 7.40495 7.97271 8.76662 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.001548 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.751264 B =18086.993370 C =18754.978132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.047 4.047 3 C 0.046 3.954 4 O -0.199 6.199 5 C 0.195 3.805 6 N -0.495 5.495 7 C -0.104 4.104 8 C 0.596 3.404 9 O -0.559 6.559 10 N -0.704 5.704 11 C 0.132 3.868 12 C -0.089 4.089 13 H 0.078 0.922 14 C -0.136 4.136 15 C 0.069 3.931 16 N -0.683 5.683 17 C 0.062 3.938 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.257 1.257 27 H -0.275 1.275 28 H -0.231 1.231 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.303 0.697 35 H 0.413 0.587 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.084 0.916 43 H 0.344 0.656 44 H 0.077 0.923 45 H 0.114 0.886 46 H 0.390 0.610 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 -18.399 -32.830 37.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 C -0.012 4.012 4 O -0.085 6.085 5 C -0.034 4.034 6 N -0.223 5.223 7 C -0.223 4.223 8 C 0.383 3.617 9 O -0.438 6.438 10 N -0.355 5.355 11 C 0.008 3.992 12 C -0.108 4.108 13 H 0.096 0.904 14 C -0.193 4.193 15 C -0.060 4.060 16 N -0.315 5.315 17 C -0.070 4.070 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.073 0.927 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.182 1.182 27 H -0.200 1.200 28 H -0.154 1.154 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.317 0.683 35 H 0.250 0.750 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.162 0.838 44 H 0.095 0.905 45 H 0.132 0.868 46 H 0.225 0.775 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.198 -18.012 -32.341 37.256 hybrid contribution -0.949 0.123 0.570 1.114 sum -5.147 -17.889 -31.770 36.822 Atomic orbital electron populations 1.21677 0.92511 1.03809 1.01730 1.20453 0.97470 0.84576 1.05902 1.24115 0.97659 0.96108 0.83290 1.84420 1.63567 1.24713 1.35807 1.29155 0.96070 0.87240 0.90898 1.70728 1.18777 1.20978 1.11861 1.21448 1.12722 0.92741 0.95366 1.16916 0.77188 0.84263 0.83345 1.90769 1.48245 1.21031 1.83787 1.45775 1.66149 1.17646 1.05923 1.21371 1.01813 0.97319 0.78706 1.21215 0.98074 0.97791 0.93766 0.90357 1.21697 0.94570 1.02070 1.01008 1.21951 1.00042 0.93041 0.90959 1.60027 1.63388 1.07382 1.00718 1.21628 1.01966 0.94872 0.88557 1.21026 0.81943 0.90892 0.82539 1.90542 1.51244 1.34684 1.73378 1.42033 1.61666 1.13291 1.06332 1.19016 1.44237 0.92855 0.89801 0.92712 1.26123 0.97011 1.02319 0.95924 1.69809 1.49062 1.32052 1.06593 0.85357 0.79654 0.77472 0.78977 1.18189 1.20047 1.15406 0.89445 0.93906 0.91819 0.87388 0.87834 0.68272 0.74997 0.90966 0.91077 0.92766 0.92632 0.92692 0.93496 0.89720 0.83757 0.90528 0.86785 0.77457 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.90 71.98 0.71 -0.86 16 2 C -0.05 -0.58 5.93 29.85 0.18 -0.40 16 3 C 0.05 0.73 6.69 25.18 0.17 0.90 16 4 O -0.20 -2.47 10.73 0.40 0.00 -2.46 16 5 C 0.19 1.83 13.19 130.52 1.72 3.55 16 6 N -0.49 -8.28 11.06 -305.15 -3.37 -11.66 16 7 C -0.10 -2.03 6.99 40.41 0.28 -1.75 16 8 C 0.60 13.13 7.81 86.66 0.68 13.80 16 9 O -0.56 -14.30 14.81 -4.09 -0.06 -14.36 16 10 N -0.70 -13.24 5.28 -466.36 -2.46 -15.70 16 11 C 0.13 2.29 5.06 86.38 0.44 2.73 16 12 C -0.09 -1.59 2.57 -10.79 -0.03 -1.62 16 13 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 14 C -0.14 -2.71 8.95 71.98 0.64 -2.06 16 15 C 0.07 1.35 5.07 86.30 0.44 1.79 16 16 N -0.68 -19.13 5.58 -517.92 -2.89 -22.02 16 17 C 0.06 1.85 6.17 85.56 0.53 2.37 16 18 C 0.45 20.15 7.82 87.66 0.69 20.83 16 19 O -0.61 -34.04 15.78 -3.06 -0.05 -34.09 16 20 N -0.59 -27.91 5.09 -306.98 -1.56 -29.47 16 21 C -0.33 -19.44 10.16 84.04 0.85 -18.59 16 22 H 0.05 3.85 7.39 -2.91 -0.02 3.82 16 23 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 24 N -0.93 -56.60 13.96 21.66 0.30 -56.30 16 25 Si 0.97 38.84 27.74 68.60 1.90 40.74 16 26 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 27 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 28 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 33 H 0.10 1.60 6.49 -2.39 -0.02 1.59 16 34 H 0.30 -0.73 8.06 -2.91 -0.02 -0.75 16 35 H 0.41 7.21 7.38 -92.71 -0.68 6.53 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.05 1.36 7.75 -2.39 -0.02 1.34 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.05 0.98 7.18 -2.39 -0.02 0.96 16 41 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.34 10.37 8.43 -89.70 -0.76 9.62 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 46 H 0.39 15.16 5.76 -92.71 -0.53 14.62 16 47 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -83.13 397.02 -1.44 -84.56 By element: Atomic # 1 Polarization: 41.46 SS G_CDS: -1.01 Total: 40.44 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 7.77 Total: 20.31 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -9.99 Total: -135.14 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.10 Total: -50.92 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.90 Total: 40.74 kcal Total: -83.13 -1.44 -84.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267983924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.684 kcal (2) G-P(sol) polarization free energy of solvation -83.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds