Wall clock time and date at job start Tue Mar 31 2020 20:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29941 * 125.37589 * 2 1 4 4 C 1.36072 * 108.47307 * 180.19077 * 3 2 1 5 5 C 1.47420 * 126.44495 * 179.86422 * 4 3 2 6 6 O 1.21614 * 119.99752 * 179.68697 * 5 4 3 7 7 N 1.34773 * 119.99984 * 359.68185 * 5 4 3 8 8 C 1.46496 * 119.99934 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47355 * 180.02562 * 8 7 5 10 10 H 1.08993 * 109.47392 * 54.99840 * 9 8 7 11 11 C 1.53003 * 109.46945 * 294.99481 * 9 8 7 12 12 C 1.53006 * 109.47452 * 174.99751 * 9 8 7 13 13 N 1.46898 * 109.47138 * 184.99841 * 12 9 8 14 14 C 1.46906 * 110.99888 * 180.02562 * 13 12 9 15 15 C 1.50699 * 109.47140 * 179.97438 * 14 13 12 16 16 O 1.21289 * 119.99678 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99614 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99518 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00466 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00085 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99807 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00303 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46922 * 90.00327 * 22 20 18 24 24 H 1.48500 * 109.47032 * 210.00074 * 22 20 18 25 25 H 1.48489 * 109.47076 * 330.00276 * 22 20 18 26 26 C 1.36088 * 107.10117 * 359.59949 * 4 3 2 27 27 C 1.50706 * 126.52202 * 180.20759 * 26 4 3 28 28 O 1.34050 * 125.37990 * 179.74847 * 2 1 3 29 29 H 1.09001 * 109.47012 * 180.27674 * 1 2 3 30 30 H 1.08996 * 109.47186 * 300.27486 * 1 2 3 31 31 H 1.09007 * 109.47032 * 60.27555 * 1 2 3 32 32 H 0.97001 * 120.00253 * 0.02562 * 7 5 4 33 33 H 1.08997 * 109.47613 * 59.99832 * 8 7 5 34 34 H 1.09003 * 109.47151 * 300.00236 * 8 7 5 35 35 H 1.08999 * 109.47096 * 180.02562 * 11 9 8 36 36 H 1.08996 * 109.47132 * 299.99905 * 11 9 8 37 37 H 1.09000 * 109.46878 * 60.00403 * 11 9 8 38 38 H 1.08997 * 109.46770 * 64.99788 * 12 9 8 39 39 H 1.08995 * 109.47019 * 305.00001 * 12 9 8 40 40 H 1.00901 * 111.00121 * 56.04666 * 13 12 9 41 41 H 1.09004 * 109.47040 * 299.99934 * 14 13 12 42 42 H 1.09000 * 109.47033 * 59.99886 * 14 13 12 43 43 H 0.96996 * 120.00269 * 359.97438 * 17 15 14 44 44 H 0.97002 * 120.00022 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.47040 * 89.99904 * 27 26 4 46 46 H 1.09000 * 109.46739 * 209.99525 * 27 26 4 47 47 H 1.08994 * 109.47071 * 330.00158 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0043 5 6 4.7439 1.5439 -0.0086 6 8 5.8605 1.0619 -0.0065 7 7 4.5878 2.8826 -0.0150 8 6 5.7631 3.7571 -0.0199 9 6 5.3112 5.2187 -0.0261 10 1 4.6414 5.3956 0.8154 11 6 4.5772 5.5201 -1.3343 12 6 6.5336 6.1311 0.0946 13 7 6.0928 7.5277 0.2091 14 6 7.2425 8.4346 0.3265 15 6 6.7522 9.8550 0.4410 16 8 5.5621 10.0887 0.4267 17 7 7.6362 10.8655 0.5592 18 6 7.1901 12.1576 0.6639 19 1 6.1305 12.3659 0.6512 20 6 8.1013 13.1994 0.7863 21 7 9.3907 12.9461 0.8023 22 14 7.4936 14.9601 0.9283 23 1 7.2905 15.2998 2.3596 24 1 8.4996 15.8800 0.3392 25 1 6.2078 15.1002 0.1990 26 6 3.5660 -0.6970 0.0022 27 6 4.7802 -1.5897 0.0050 28 8 2.2832 -1.0929 0.0048 29 1 -0.3633 -1.0277 0.0050 30 1 -0.3633 0.5181 0.8875 31 1 -0.3633 0.5096 -0.8925 32 1 3.6972 3.2670 -0.0164 33 1 6.3609 3.5575 -0.9092 34 1 6.3618 3.5660 0.8707 35 1 4.2557 6.5615 -1.3389 36 1 5.2471 5.3433 -2.1758 37 1 3.7064 4.8702 -1.4203 38 1 7.1594 6.0189 -0.7907 39 1 7.1055 5.8568 0.9810 40 1 5.4590 7.6444 0.9855 41 1 7.8198 8.1764 1.2143 42 1 7.8729 8.3384 -0.5575 43 1 8.5879 10.6785 0.5710 44 1 10.0269 13.6734 0.8874 45 1 5.0741 -1.8000 1.0334 46 1 4.5451 -2.5244 -0.5040 47 1 5.5995 -1.0903 -0.5120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268010056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:43 Heat of formation + Delta-G solvation = -64.826565 kcal Electronic energy + Delta-G solvation = -27780.320697 eV Core-core repulsion = 23578.318483 eV Total energy + Delta-G solvation = -4202.002214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.87402 -39.86258 -38.35642 -37.20516 -35.37246 -34.88113 -33.84379 -33.49617 -32.28493 -31.17709 -30.55231 -27.62910 -27.31714 -26.10069 -24.83572 -23.68196 -22.87418 -21.71213 -20.88211 -20.36275 -19.19269 -18.24412 -17.83098 -17.50075 -16.45342 -16.21205 -15.90027 -15.77848 -15.32890 -14.82291 -14.72525 -14.59016 -14.31339 -14.25176 -13.95077 -13.78812 -13.62383 -13.38052 -13.25105 -13.20398 -13.11214 -12.78164 -12.58628 -12.36421 -11.92885 -11.68013 -11.63037 -11.50357 -11.21604 -11.12661 -11.03991 -10.96757 -10.84286 -10.39051 -10.37969 -10.20380 -9.49591 -9.41705 -9.09378 -8.44403 -8.03324 -7.94211 -6.40351 -3.81172 0.67748 1.58141 2.01974 2.80693 2.98006 3.18868 3.27428 3.33561 3.44075 3.92748 4.10432 4.15362 4.31797 4.37885 4.59189 4.74088 4.83902 4.84884 4.87452 4.94956 4.97323 5.03664 5.17572 5.19505 5.27449 5.36713 5.43271 5.48373 5.56650 5.59152 5.70471 5.71654 5.78293 5.89615 5.95517 6.00698 6.08916 6.24084 6.28924 6.44250 6.97066 7.22348 7.29332 7.56494 7.67407 7.87352 8.07845 8.62846 9.19293 9.55992 10.07470 10.77389 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029232 B = 0.001489 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.608813 B =18804.840607 C =19577.636539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.194 3.806 3 N -0.460 5.460 4 C -0.077 4.077 5 C 0.602 3.398 6 O -0.537 6.537 7 N -0.708 5.708 8 C 0.124 3.876 9 C -0.100 4.100 10 H 0.077 0.923 11 C -0.141 4.141 12 C 0.067 3.933 13 N -0.666 5.666 14 C 0.051 3.949 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.040 3.960 27 C -0.077 4.077 28 O -0.198 6.198 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.410 0.590 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.029 0.971 40 H 0.349 0.651 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.704 -30.360 -1.546 32.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.015 4.015 3 N -0.190 5.190 4 C -0.197 4.197 5 C 0.388 3.612 6 O -0.414 6.414 7 N -0.359 5.359 8 C 0.000 4.000 9 C -0.119 4.119 10 H 0.096 0.904 11 C -0.198 4.198 12 C -0.064 4.064 13 N -0.298 5.298 14 C -0.082 4.082 15 C 0.227 3.773 16 O -0.468 6.468 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.016 4.016 27 C -0.133 4.133 28 O -0.085 6.085 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.246 0.754 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.168 0.832 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.099 0.901 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.823 -29.670 -2.219 32.016 hybrid contribution 0.476 0.188 1.026 1.147 sum -11.347 -29.483 -1.193 31.613 Atomic orbital electron populations 1.20322 0.80711 1.04968 1.05471 1.26241 0.96520 0.78171 1.00571 1.70726 1.00659 1.30000 1.17624 1.21471 0.92174 0.92288 1.13717 1.16668 0.86141 0.81881 0.76514 1.90789 1.24268 1.75269 1.51121 1.45787 1.11102 1.05207 1.73774 1.21469 0.87228 0.88594 1.02683 1.21343 0.98116 0.92211 1.00247 0.90430 1.21763 0.99271 1.03092 0.95683 1.21890 0.95445 0.88262 1.00764 1.60028 1.16243 1.02589 1.50975 1.21668 0.92856 0.92637 1.01025 1.19816 0.87118 0.86055 0.84357 1.90518 1.16135 1.84469 1.55644 1.41864 1.08479 1.05893 1.63845 1.19707 0.94669 0.81569 1.46977 0.87924 1.25263 0.94927 1.00405 0.97362 1.69616 1.00749 1.33570 1.50388 0.85852 0.78471 0.81475 0.78454 1.20450 1.20932 1.19416 1.23749 0.83893 0.94533 0.99441 1.20614 0.90174 0.97723 1.04780 1.84339 1.16392 1.38008 1.69770 0.89189 0.88176 0.88165 0.75367 0.90885 0.91177 0.90365 0.92797 0.93583 0.90692 0.95250 0.83215 0.93877 0.89581 0.77454 0.91892 0.88933 0.90097 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.01 0.38 0.19 16 2 C 0.19 1.55 8.30 -13.08 -0.11 1.45 16 3 N -0.46 -4.73 11.06 -7.65 -0.08 -4.81 16 4 C -0.08 -0.84 6.99 -83.02 -0.58 -1.42 16 5 C 0.60 7.14 7.81 -12.52 -0.10 7.04 16 6 O -0.54 -7.28 14.80 5.27 0.08 -7.21 16 7 N -0.71 -7.34 5.28 -61.39 -0.32 -7.67 16 8 C 0.12 1.25 5.06 -4.05 -0.02 1.23 16 9 C -0.10 -1.03 2.57 -90.62 -0.23 -1.26 16 10 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.14 -1.53 8.95 37.16 0.33 -1.20 16 12 C 0.07 0.79 5.07 -3.82 -0.02 0.77 16 13 N -0.67 -10.49 5.58 -115.05 -0.64 -11.13 16 14 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 15 C 0.44 10.45 7.82 -10.99 -0.09 10.37 16 16 O -0.58 -15.87 15.78 5.55 0.09 -15.78 16 17 N -0.56 -14.40 5.29 -10.97 -0.06 -14.45 16 18 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 22 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C 0.04 0.38 7.44 -35.08 -0.26 0.12 16 27 C -0.08 -0.51 9.88 36.01 0.36 -0.15 16 28 O -0.20 -1.71 10.73 6.52 0.07 -1.64 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.41 3.95 7.38 -40.82 -0.30 3.65 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.02 7.75 -51.93 -0.40 0.62 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.45 7.18 -51.93 -0.37 0.07 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.35 5.68 8.43 -39.29 -0.33 5.35 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 43 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.11 0.88 6.48 -51.93 -0.34 0.55 16 LS Contribution 400.64 15.07 6.04 6.04 Total: -1.00 -34.26 400.64 -6.82 -41.08 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -7.07 Total: 13.47 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -0.61 Total: 9.92 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.38 Total: -62.00 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: 0.24 Total: -24.64 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.26 -6.82 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268010056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.745 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds