Wall clock time and date at job start Tue Mar 31 2020 20:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29937 * 125.37660 * 2 1 4 4 C 1.36071 * 108.47675 * 180.02562 * 3 2 1 5 5 C 1.47421 * 126.44773 * 180.02562 * 4 3 2 6 6 O 1.21616 * 119.99747 * 179.97438 * 5 4 3 7 7 N 1.34768 * 120.00030 * 359.97438 * 5 4 3 8 8 C 1.46501 * 119.99838 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47146 * 179.97438 * 8 7 5 10 10 H 1.09005 * 109.47128 * 304.99167 * 9 8 7 11 11 C 1.52993 * 109.47520 * 64.99447 * 9 8 7 12 12 C 1.53000 * 109.47450 * 185.00007 * 9 8 7 13 13 N 1.46901 * 109.47645 * 174.99887 * 12 9 8 14 14 C 1.46897 * 111.00129 * 179.97438 * 13 12 9 15 15 C 1.50699 * 109.47142 * 179.97438 * 14 13 12 16 16 O 1.21295 * 119.99604 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00170 * 180.02562 * 15 14 13 18 18 C 1.37102 * 120.00152 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99730 * 359.97438 * 18 17 15 20 20 C 1.38946 * 119.99806 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00548 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99790 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46795 * 90.00112 * 22 20 18 24 24 H 1.48495 * 109.47263 * 210.00029 * 22 20 18 25 25 H 1.48500 * 109.47096 * 330.00020 * 22 20 18 26 26 C 1.36090 * 107.09864 * 0.02562 * 4 3 2 27 27 C 1.50705 * 126.52154 * 180.26533 * 26 4 3 28 28 O 1.34045 * 125.37915 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46720 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46835 * 299.99674 * 1 2 3 31 31 H 1.08996 * 109.47039 * 59.99686 * 1 2 3 32 32 H 0.96998 * 120.00262 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.46978 * 299.99490 * 8 7 5 34 34 H 1.09004 * 109.47619 * 59.99557 * 8 7 5 35 35 H 1.09004 * 109.47759 * 180.02562 * 11 9 8 36 36 H 1.09002 * 109.47588 * 300.00240 * 11 9 8 37 37 H 1.09002 * 109.47397 * 60.00184 * 11 9 8 38 38 H 1.09004 * 109.46925 * 294.99808 * 12 9 8 39 39 H 1.09001 * 109.47028 * 54.99421 * 12 9 8 40 40 H 1.00902 * 110.99639 * 56.03914 * 13 12 9 41 41 H 1.09000 * 109.47055 * 299.99809 * 14 13 12 42 42 H 1.09001 * 109.47032 * 59.99813 * 14 13 12 43 43 H 0.96997 * 120.00025 * 359.97438 * 17 15 14 44 44 H 0.96998 * 120.00484 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.46974 * 179.70817 * 27 26 4 46 46 H 1.09008 * 109.46703 * 299.70862 * 27 26 4 47 47 H 1.08993 * 109.47274 * 59.70438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0006 5 6 4.7440 1.5439 -0.0003 6 8 5.8605 1.0619 -0.0004 7 7 4.5878 2.8825 0.0002 8 6 5.7632 3.7571 -0.0001 9 6 5.3113 5.2188 -0.0001 10 1 4.6408 5.3918 -0.8420 11 6 4.5783 5.5261 1.3072 12 6 6.5335 6.1305 -0.1261 13 7 6.0927 7.5267 -0.2466 14 6 7.2423 8.4330 -0.3691 15 6 6.7519 9.8527 -0.4910 16 8 5.5618 10.0865 -0.4776 17 7 7.6357 10.8625 -0.6159 18 6 7.1895 12.1541 -0.7273 19 1 6.1298 12.3623 -0.7154 20 6 8.1007 13.1952 -0.8556 21 7 9.3901 12.9419 -0.8706 22 14 7.4928 14.9552 -1.0066 23 1 7.3744 15.5557 0.3463 24 1 8.4563 15.7439 -1.8157 25 1 6.1645 14.9648 -1.6705 26 6 3.5660 -0.6970 -0.0015 27 6 4.7802 -1.5897 0.0032 28 8 2.2831 -1.0929 -0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 3.6973 3.2670 -0.0001 33 1 6.3617 3.5615 0.8897 34 1 6.3612 3.5620 -0.8903 35 1 4.2560 6.5674 1.3070 36 1 3.7075 4.8767 1.3969 37 1 5.2488 5.3532 2.1490 38 1 7.1601 6.0225 0.7592 39 1 7.1047 5.8521 -1.0117 40 1 5.5069 7.7893 0.5318 41 1 7.8735 8.3408 0.5147 42 1 7.8188 8.1706 -1.2562 43 1 8.5874 10.6755 -0.6270 44 1 10.0262 13.6688 -0.9598 45 1 4.4642 -2.6328 0.0063 46 1 5.3785 -1.3939 -0.8867 47 1 5.3760 -1.3879 0.8932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268010057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:46 Heat of formation + Delta-G solvation = -93.574480 kcal Electronic energy + Delta-G solvation = -27784.732104 eV Core-core repulsion = 23581.483286 eV Total energy + Delta-G solvation = -4203.248817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.52615 -40.74190 -40.16288 -38.36545 -36.23941 -36.02128 -35.64371 -34.07946 -33.43690 -33.11048 -30.97644 -28.89186 -28.30574 -27.11937 -26.34155 -24.80113 -23.83036 -22.40389 -21.68146 -21.25626 -20.88776 -19.91207 -18.99552 -18.15600 -17.92990 -17.24171 -16.97882 -16.85727 -16.54589 -16.37050 -15.99473 -15.57115 -15.43594 -15.21184 -15.11094 -14.79110 -14.44171 -14.34815 -14.29228 -13.95791 -13.63480 -13.57026 -13.49814 -13.46157 -13.35002 -13.21232 -13.08113 -12.79571 -12.41938 -12.36329 -12.13815 -12.09410 -11.91115 -11.86987 -11.77453 -11.50491 -11.31328 -10.34762 -10.25351 -10.01541 -9.77617 -9.32029 -8.46488 -5.95465 -0.02418 0.90292 1.38373 1.42125 1.42807 1.55078 2.00693 2.05290 2.15435 2.29784 2.84841 2.96696 3.20761 3.52930 3.54470 3.66362 3.88324 3.92525 3.97329 4.11061 4.30556 4.33452 4.47055 4.51116 4.55487 4.56433 4.58312 4.64838 4.65818 4.68740 4.77861 4.79364 4.89065 4.92593 4.98472 5.05403 5.20407 5.21760 5.30891 5.38878 5.41070 5.88901 6.10469 6.23910 6.41727 6.53472 6.60208 7.02190 7.12565 7.56259 8.11494 8.70845 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029212 B = 0.001489 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.284145 B =18805.569443 C =19577.684654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.198 3.802 3 N -0.486 5.486 4 C -0.105 4.105 5 C 0.598 3.402 6 O -0.560 6.560 7 N -0.703 5.703 8 C 0.132 3.868 9 C -0.090 4.090 10 H 0.082 0.918 11 C -0.149 4.149 12 C 0.068 3.932 13 N -0.683 5.683 14 C 0.064 3.936 15 C 0.437 3.563 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.336 4.336 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.273 1.273 26 C 0.039 3.961 27 C -0.066 4.066 28 O -0.198 6.198 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.413 0.587 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.345 0.655 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.035 -31.417 3.593 33.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.011 4.011 3 N -0.217 5.217 4 C -0.224 4.224 5 C 0.385 3.615 6 O -0.440 6.440 7 N -0.354 5.354 8 C 0.008 3.992 9 C -0.109 4.109 10 H 0.100 0.900 11 C -0.207 4.207 12 C -0.061 4.061 13 N -0.316 5.316 14 C -0.069 4.069 15 C 0.224 3.776 16 O -0.510 6.510 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.017 4.017 27 C -0.122 4.122 28 O -0.086 6.086 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.250 0.750 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.165 0.835 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.122 0.878 46 H 0.116 0.884 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.180 -30.865 2.908 33.308 hybrid contribution 0.571 0.650 0.739 1.138 sum -11.609 -30.215 3.647 32.573 Atomic orbital electron populations 1.20618 0.77520 1.06781 1.06495 1.27226 0.97977 0.77494 0.98415 1.70703 1.00622 1.31130 1.19219 1.21488 0.92320 0.92948 1.15660 1.16857 0.86244 0.82236 0.76198 1.90786 1.25095 1.75829 1.52265 1.45753 1.11329 1.04959 1.73334 1.21362 0.87094 0.88016 1.02689 1.21208 0.97665 0.92171 0.99833 0.89985 1.21867 1.00602 1.01834 0.96391 1.21947 0.96063 0.86545 1.01570 1.60088 1.18790 1.01755 1.50981 1.21540 0.93357 0.88822 1.03136 1.20895 0.86404 0.87979 0.82283 1.90487 1.17943 1.85561 1.57020 1.41932 1.08902 1.05768 1.64411 1.19685 0.94005 0.83457 1.49386 0.90302 1.26045 0.95011 1.03912 0.96267 1.69670 1.01429 1.34953 1.50024 0.84916 0.77967 0.76788 0.78584 1.19573 1.19537 1.19830 1.24173 0.84773 0.94482 0.98318 1.20553 0.88376 0.97901 1.05362 1.84374 1.16169 1.38249 1.69786 0.87003 0.86975 0.87058 0.74975 0.90945 0.91090 0.92657 0.91775 0.92096 0.93719 0.89979 0.83528 0.91491 0.87753 0.76950 0.91290 0.87777 0.88364 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 71.24 0.75 0.50 16 2 C 0.20 2.93 8.30 88.39 0.73 3.66 16 3 N -0.49 -9.76 11.06 -293.03 -3.24 -13.00 16 4 C -0.11 -2.29 6.99 40.41 0.28 -2.01 16 5 C 0.60 14.19 7.81 86.66 0.68 14.86 16 6 O -0.56 -15.30 15.61 -4.08 -0.06 -15.36 16 7 N -0.70 -14.34 5.28 -466.37 -2.46 -16.80 16 8 C 0.13 2.54 5.06 86.38 0.44 2.98 16 9 C -0.09 -1.77 2.63 -10.80 -0.03 -1.80 16 10 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 11 C -0.15 -2.86 8.84 71.98 0.64 -2.22 16 12 C 0.07 1.53 5.14 86.30 0.44 1.97 16 13 N -0.68 -21.32 6.12 -517.93 -3.17 -24.49 16 14 C 0.06 2.19 6.17 85.56 0.53 2.72 16 15 C 0.44 21.00 7.82 87.66 0.69 21.69 16 16 O -0.62 -34.90 15.78 -3.08 -0.05 -34.95 16 17 N -0.57 -29.69 5.29 -306.99 -1.62 -31.32 16 18 C -0.34 -19.26 9.68 84.04 0.81 -18.45 16 19 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 21 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 22 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 26 C 0.04 0.71 7.44 25.19 0.19 0.90 16 27 C -0.07 -0.80 9.13 71.24 0.65 -0.15 16 28 O -0.20 -3.18 10.73 0.45 0.00 -3.18 16 29 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.41 7.82 7.38 -92.71 -0.68 7.13 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.05 1.22 6.68 -2.38 -0.02 1.20 16 36 H 0.06 1.10 7.18 -2.39 -0.02 1.09 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 38 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.34 11.27 6.69 -89.69 -0.60 10.67 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.40 19.48 7.90 -92.71 -0.73 18.74 16 44 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 45 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.10 1.26 8.08 -2.38 -0.02 1.24 16 47 H 0.10 1.25 8.07 -2.39 -0.02 1.23 16 Total: -1.00 -75.28 399.96 -2.02 -77.31 By element: Atomic # 1 Polarization: 42.74 SS G_CDS: -0.99 Total: 41.75 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 7.26 Total: 24.44 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -10.21 Total: -135.21 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -0.11 Total: -53.49 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -75.28 -2.02 -77.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268010057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.267 kcal (2) G-P(sol) polarization free energy of solvation -75.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds