Wall clock time and date at job start Tue Mar 31 2020 22:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.46836 * 2 1 4 4 N 1.31884 * 119.93312 * 90.00291 * 3 2 1 5 5 N 1.28273 * 122.62213 * 180.02562 * 4 3 2 6 6 C 1.32490 * 122.22359 * 359.97438 * 5 4 3 7 7 O 1.35448 * 120.25284 * 180.02562 * 6 5 4 8 8 C 1.40450 * 119.49211 * 0.02562 * 6 5 4 9 9 C 1.47826 * 121.18087 * 179.97438 * 8 6 5 10 10 O 1.21550 * 119.99852 * 90.00109 * 9 8 6 11 11 N 1.34773 * 120.00050 * 270.00844 * 9 8 6 12 12 C 1.46506 * 119.99969 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47237 * 179.72043 * 12 11 9 14 14 H 1.09002 * 109.46857 * 60.00093 * 13 12 11 15 15 O 1.42892 * 109.47180 * 299.99901 * 13 12 11 16 16 C 1.52996 * 109.46929 * 179.97438 * 13 12 11 17 17 N 1.46506 * 109.46880 * 185.00290 * 16 13 12 18 18 C 1.36938 * 119.99901 * 180.02562 * 17 16 13 19 19 H 1.07999 * 120.00143 * 359.97438 * 18 17 16 20 20 C 1.38808 * 119.99925 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00057 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99993 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47185 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47219 * 119.99769 * 22 20 18 25 25 H 1.48502 * 109.46866 * 239.99882 * 22 20 18 26 26 C 1.38485 * 119.93212 * 270.25378 * 3 2 1 27 27 C 1.50696 * 121.05995 * 0.03200 * 26 3 2 28 28 C 1.53005 * 109.47030 * 270.22035 * 27 26 3 29 29 H 1.08997 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47260 * 299.99954 * 1 2 3 31 31 H 1.09004 * 109.46918 * 60.00607 * 1 2 3 32 32 H 1.08997 * 109.46967 * 239.99821 * 2 1 3 33 33 H 1.09002 * 109.46793 * 119.99926 * 2 1 3 34 34 H 0.96695 * 113.99880 * 269.97778 * 7 6 5 35 35 H 0.97005 * 120.00161 * 359.71826 * 11 9 8 36 36 H 1.09001 * 109.46512 * 299.72412 * 12 11 9 37 37 H 1.08998 * 109.47174 * 59.71534 * 12 11 9 38 38 H 0.96701 * 114.00337 * 299.99964 * 15 13 12 39 39 H 1.09006 * 109.47486 * 304.99942 * 16 13 12 40 40 H 1.08999 * 109.47149 * 65.00259 * 16 13 12 41 41 H 0.96996 * 120.00001 * 359.97438 * 17 16 13 42 42 H 0.97003 * 120.00220 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.47425 * 30.21580 * 27 26 3 44 44 H 1.08996 * 109.47532 * 150.21956 * 27 26 3 45 45 H 1.08994 * 109.46935 * 299.99747 * 28 27 26 46 46 H 1.08996 * 109.47028 * 59.99612 * 28 27 26 47 47 H 1.09001 * 109.46969 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2517 2.0412 1.1429 5 7 2.6783 3.2494 1.2031 6 6 2.9309 3.9644 0.1166 7 8 3.3809 5.2372 0.2267 8 6 2.7286 3.3924 -1.1500 9 6 2.9979 4.1562 -2.3866 10 8 4.1013 4.1198 -2.8953 11 7 2.0202 4.8931 -2.9499 12 6 2.2872 5.6506 -4.1752 13 6 1.0181 6.3889 -4.6053 14 1 0.7104 7.0734 -3.8147 15 8 -0.0244 5.4423 -4.8483 16 6 1.2972 7.1804 -5.8845 17 7 0.1198 7.9808 -6.2302 18 6 0.1359 8.7762 -7.3448 19 1 1.0166 8.8138 -7.9688 20 6 -0.9795 9.5349 -7.6721 21 7 -2.0526 9.4895 -6.9114 22 14 -0.9574 10.6204 -9.1922 23 1 0.3573 10.4946 -9.8712 24 1 -2.0367 10.1957 -10.1195 25 1 -1.1749 12.0344 -8.7938 26 6 2.2576 2.0740 -1.2001 27 6 2.0079 1.3872 -2.5180 28 6 3.2816 0.6688 -2.9681 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.6787 5.9012 0.2584 35 1 1.1385 4.9190 -2.5462 36 1 3.0825 6.3726 -3.9898 37 1 2.5950 4.9662 -4.9657 38 1 0.1810 4.8003 -5.5416 39 1 2.1506 7.8397 -5.7250 40 1 1.5187 6.4897 -6.6981 41 1 -0.6713 7.9468 -5.6700 42 1 -2.8322 10.0194 -7.1403 43 1 1.2028 0.6614 -2.4028 44 1 1.7249 2.1279 -3.2659 45 1 4.0866 1.3945 -3.0835 46 1 3.5645 -0.0719 -2.2202 47 1 3.1008 0.1717 -3.9212 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268306503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:47 Heat of formation + Delta-G solvation = -70.582726 kcal Electronic energy + Delta-G solvation = -29518.534088 eV Core-core repulsion = 25316.282268 eV Total energy + Delta-G solvation = -4202.251820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.98821 -39.83677 -38.32307 -37.78346 -36.24074 -34.62041 -34.17790 -34.07585 -31.73113 -31.32444 -30.42129 -29.27281 -26.54683 -25.55171 -25.16669 -23.33068 -22.47861 -22.27240 -21.60014 -20.70930 -19.37404 -18.71977 -18.05472 -17.24831 -16.76842 -16.35442 -16.08264 -15.74121 -15.40916 -15.29409 -14.71971 -14.64897 -14.52313 -14.28339 -14.01397 -13.92518 -13.76234 -13.16621 -13.06657 -13.00662 -12.80897 -12.66249 -12.50188 -12.42895 -12.07486 -11.99362 -11.77141 -11.58798 -11.24008 -11.04229 -10.89100 -10.86183 -10.74033 -10.34270 -10.21149 -9.93131 -9.88650 -9.80454 -9.60684 -9.41180 -8.98301 -7.02048 -5.83358 -3.13505 0.03839 0.26628 2.08022 2.61285 2.76910 2.98622 3.38692 3.44424 3.46668 3.57966 3.85184 3.95068 4.19662 4.36101 4.44780 4.55827 4.60168 4.62929 4.72520 4.73469 4.80355 4.94922 4.99043 5.06680 5.15075 5.18817 5.38287 5.41868 5.46418 5.48845 5.51334 5.55167 5.59683 5.65733 5.73854 5.79862 5.85617 6.01714 6.14259 6.40435 6.54889 6.85503 7.07843 7.62254 7.73156 7.80496 8.19019 8.34507 9.46528 10.01755 10.37191 11.38953 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.002227 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.866020 B =12570.949858 C =12878.742551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.072 4.072 3 C 0.065 3.935 4 N -0.203 5.203 5 N -0.253 5.253 6 C 0.288 3.712 7 O -0.465 6.465 8 C -0.143 4.143 9 C 0.571 3.429 10 O -0.515 6.515 11 N -0.710 5.710 12 C 0.088 3.912 13 C 0.089 3.911 14 H 0.106 0.894 15 O -0.552 6.552 16 C 0.128 3.872 17 N -0.726 5.726 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.929 5.929 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.023 4.023 27 C -0.094 4.094 28 C -0.151 4.151 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.409 0.591 35 H 0.406 0.594 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.373 0.627 39 H 0.029 0.971 40 H 0.024 0.976 41 H 0.388 0.612 42 H 0.255 0.745 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.718 -20.781 13.755 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.080 4.080 4 N -0.047 5.047 5 N -0.105 5.105 6 C 0.102 3.898 7 O -0.271 6.271 8 C -0.158 4.158 9 C 0.354 3.646 10 O -0.390 6.390 11 N -0.361 5.361 12 C -0.036 4.036 13 C 0.029 3.971 14 H 0.124 0.876 15 O -0.357 6.357 16 C -0.001 4.001 17 N -0.371 5.371 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.035 4.035 27 C -0.132 4.132 28 C -0.208 4.208 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.269 0.731 35 H 0.242 0.758 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.221 0.779 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.223 0.777 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.856 -20.533 15.307 26.789 hybrid contribution -0.667 0.952 -2.353 2.624 sum 7.189 -19.581 12.954 24.554 Atomic orbital electron populations 1.21769 0.93332 1.02844 1.02764 1.20530 0.97083 0.88851 1.04634 1.22780 0.97073 0.98981 0.89159 1.72847 1.06582 1.00980 1.24315 1.73074 1.09807 1.01295 1.26276 1.20848 0.92344 0.88489 0.88139 1.84772 1.35442 1.11725 1.95175 1.21352 1.02545 0.96522 0.95419 1.17642 0.84910 0.79161 0.82858 1.90853 1.22605 1.62967 1.62545 1.45917 1.14179 1.48122 1.27926 1.22231 0.99489 0.95911 0.85954 1.22412 0.85563 0.89993 0.99115 0.87615 1.86585 1.42805 1.45982 1.60351 1.21192 0.92351 0.93774 0.92798 1.42239 1.13135 1.51088 1.30622 1.19251 0.98995 1.17825 1.01493 0.91122 1.24767 0.96200 1.00668 0.99178 1.69682 1.04238 1.44530 1.39310 0.86110 0.77282 0.80245 0.82473 1.20520 1.21774 1.21778 1.21138 0.92850 0.91636 0.97838 1.20771 1.00264 1.00453 0.91729 1.21782 0.96578 1.00714 1.01718 0.91207 0.91865 0.92268 0.89235 0.89004 0.73110 0.75837 0.89877 0.90609 0.77949 0.95282 0.95853 0.77730 0.93467 0.88753 0.89665 0.91520 0.92154 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.78 37.16 0.36 -0.37 16 2 C -0.07 -0.41 5.56 -27.88 -0.16 -0.56 16 3 C 0.07 0.59 6.11 -82.48 -0.50 0.08 16 4 N -0.20 -2.33 11.40 33.56 0.38 -1.95 16 5 N -0.25 -3.19 11.52 30.73 0.35 -2.84 16 6 C 0.29 3.34 7.88 -16.44 -0.13 3.21 16 7 O -0.47 -4.89 13.09 -18.04 -0.24 -5.13 16 8 C -0.14 -1.55 5.69 -104.45 -0.59 -2.15 16 9 C 0.57 6.80 5.62 -12.34 -0.07 6.73 16 10 O -0.51 -8.01 17.11 5.32 0.09 -7.92 16 11 N -0.71 -7.16 5.44 -61.26 -0.33 -7.49 16 12 C 0.09 1.00 5.34 -4.04 -0.02 0.98 16 13 C 0.09 1.21 3.08 -26.73 -0.08 1.13 16 14 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 15 O -0.55 -7.66 13.03 -35.23 -0.46 -8.12 16 16 C 0.13 2.30 5.90 -4.04 -0.02 2.28 16 17 N -0.73 -17.62 5.55 -59.91 -0.33 -17.96 16 18 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 22 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C -0.02 -0.21 5.22 -103.84 -0.54 -0.75 16 27 C -0.09 -0.65 5.07 -27.88 -0.14 -0.80 16 28 C -0.15 -1.05 9.78 37.16 0.36 -0.69 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.38 8.14 -51.94 -0.42 -0.05 16 31 H 0.06 0.28 7.43 -51.93 -0.39 -0.10 16 32 H 0.09 0.36 6.00 -51.93 -0.31 0.05 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.41 2.25 9.06 45.56 0.41 2.66 16 35 H 0.41 3.56 8.33 -40.82 -0.34 3.22 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.37 4.17 9.05 45.56 0.41 4.58 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.39 10.11 7.67 -40.82 -0.31 9.79 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.09 0.45 6.03 -51.93 -0.31 0.14 16 44 H 0.08 0.64 7.24 -51.93 -0.38 0.27 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.36 7.43 -51.93 -0.39 -0.03 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -35.87 397.39 -6.00 -41.87 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -5.37 Total: 11.73 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -1.78 Total: 1.82 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.80 Total: -57.24 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.60 Total: -21.17 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.87 -6.00 -41.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268306503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.713 kcal (2) G-P(sol) polarization free energy of solvation -35.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds