Wall clock time and date at job start Tue Mar 31 2020 22:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50690 * 109.47500 * 2 1 4 4 N 1.31883 * 119.93706 * 89.99611 * 3 2 1 5 5 N 1.28273 * 122.62955 * 180.02562 * 4 3 2 6 6 C 1.32485 * 122.21604 * 359.97438 * 5 4 3 7 7 O 1.35443 * 120.25038 * 180.02562 * 6 5 4 8 8 C 1.40456 * 119.49523 * 0.02562 * 6 5 4 9 9 C 1.47828 * 121.17601 * 180.02562 * 8 6 5 10 10 O 1.21553 * 120.00225 * 89.99877 * 9 8 6 11 11 N 1.34777 * 119.99791 * 269.71839 * 9 8 6 12 12 C 1.46499 * 120.00199 * 180.27503 * 11 9 8 13 13 C 1.52997 * 109.47551 * 180.02562 * 12 11 9 14 14 H 1.09006 * 109.46907 * 305.00459 * 13 12 11 15 15 O 1.42899 * 109.47165 * 64.99775 * 13 12 11 16 16 C 1.52989 * 109.47435 * 185.00577 * 13 12 11 17 17 N 1.46500 * 109.47503 * 179.97438 * 16 13 12 18 18 C 1.36937 * 120.00241 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00088 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00000 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00067 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00213 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46704 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46853 * 120.00138 * 22 20 18 25 25 H 1.48502 * 109.47033 * 240.00433 * 22 20 18 26 26 C 1.38484 * 119.93376 * 270.28079 * 3 2 1 27 27 C 1.50700 * 121.05728 * 359.97438 * 26 3 2 28 28 C 1.52998 * 109.47453 * 270.27231 * 27 26 3 29 29 H 1.09005 * 109.46643 * 60.00000 * 1 2 3 30 30 H 1.08999 * 109.47459 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47133 * 300.00057 * 1 2 3 32 32 H 1.09005 * 109.47048 * 239.99217 * 2 1 3 33 33 H 1.09005 * 109.46643 * 120.00000 * 2 1 3 34 34 H 0.96704 * 114.00514 * 269.97786 * 7 6 5 35 35 H 0.97001 * 119.99727 * 0.28399 * 11 9 8 36 36 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 37 37 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 38 38 H 0.96700 * 113.99610 * 60.00555 * 15 13 12 39 39 H 1.09006 * 109.46977 * 299.99839 * 16 13 12 40 40 H 1.09002 * 109.47666 * 59.99555 * 16 13 12 41 41 H 0.97005 * 119.99460 * 359.97438 * 17 16 13 42 42 H 0.96998 * 120.00208 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.46878 * 30.26786 * 27 26 3 44 44 H 1.09002 * 109.47302 * 150.27061 * 27 26 3 45 45 H 1.08998 * 109.47840 * 179.97438 * 28 27 26 46 46 H 1.09003 * 109.46715 * 299.99654 * 28 27 26 47 47 H 1.09002 * 109.47508 * 59.99485 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2518 2.0412 1.1429 5 7 2.6785 3.2494 1.2031 6 6 2.9313 3.9642 0.1167 7 8 3.3814 5.2369 0.2267 8 6 2.7290 3.3921 -1.1501 9 6 2.9997 4.1556 -2.3866 10 8 4.1033 4.1181 -2.8948 11 7 2.0212 4.8886 -2.9537 12 6 2.2876 5.6405 -4.1825 13 6 1.0198 6.3813 -4.6122 14 1 0.1983 5.6711 -4.7067 15 8 0.6877 7.3658 -3.6312 16 6 1.2604 7.0648 -5.9596 17 7 0.0463 7.7737 -6.3714 18 6 0.0244 8.4645 -7.5536 19 1 0.9020 8.4864 -8.1826 20 6 -1.1263 9.1357 -7.9440 21 7 -2.1961 9.1086 -7.1776 22 14 -1.1565 10.0775 -9.5570 23 1 0.1624 9.9523 -10.2279 24 1 -2.2141 9.5184 -10.4368 25 1 -1.4418 11.5099 -9.2885 26 6 2.2573 2.0741 -1.2001 27 6 2.0081 1.3871 -2.5180 28 6 3.2818 0.6685 -2.9675 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5140 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.6793 5.9011 0.2582 35 1 1.1405 4.9185 -2.5481 36 1 3.0854 6.3609 -4.0019 37 1 2.5915 4.9520 -4.9710 38 1 1.3750 8.0322 -3.4944 39 1 2.0819 7.7751 -5.8652 40 1 1.5137 6.3139 -6.7080 41 1 -0.7421 7.7537 -5.8066 42 1 -3.0000 9.5779 -7.4502 43 1 1.2029 0.6614 -2.4029 44 1 1.7255 2.1277 -3.2662 45 1 3.1015 0.1712 -3.9205 46 1 4.0870 1.3943 -3.0827 47 1 3.5645 -0.0721 -2.2194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268306508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:51 Heat of formation + Delta-G solvation = -70.589936 kcal Electronic energy + Delta-G solvation = -29490.977246 eV Core-core repulsion = 25288.725113 eV Total energy + Delta-G solvation = -4202.252133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.98902 -39.83472 -38.31660 -37.77389 -36.24139 -34.63356 -34.17108 -34.06231 -31.73113 -31.31152 -30.42199 -29.27270 -26.54606 -25.55258 -25.16777 -23.33311 -22.48643 -22.27337 -21.59216 -20.70077 -19.36920 -18.71146 -18.06039 -17.23987 -16.76690 -16.34490 -16.10020 -15.76723 -15.32816 -15.31270 -14.72111 -14.64937 -14.53207 -14.27549 -14.01187 -13.94909 -13.75515 -13.16525 -13.08370 -13.00633 -12.78719 -12.65891 -12.48737 -12.44123 -12.07433 -11.98764 -11.77272 -11.59013 -11.24256 -11.03389 -10.89204 -10.86565 -10.73017 -10.34444 -10.20273 -9.93138 -9.88563 -9.80279 -9.60153 -9.41115 -8.98107 -7.01742 -5.83130 -3.13301 0.03688 0.26666 2.07882 2.61423 2.76968 2.98872 3.38676 3.44405 3.46666 3.57830 3.84965 3.95183 4.19064 4.35795 4.44224 4.58073 4.59217 4.62649 4.72529 4.73212 4.80072 4.94775 4.98843 5.08613 5.14875 5.18389 5.38032 5.41939 5.45193 5.48812 5.51098 5.54816 5.58931 5.65417 5.73701 5.80251 5.85585 6.02054 6.14673 6.40053 6.55481 6.86161 7.07216 7.62344 7.73789 7.82125 8.19066 8.34829 9.46851 10.02276 10.37946 11.39125 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.002236 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.463004 B =12521.633412 C =12865.594387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.072 4.072 3 C 0.065 3.935 4 N -0.203 5.203 5 N -0.253 5.253 6 C 0.289 3.711 7 O -0.465 6.465 8 C -0.143 4.143 9 C 0.571 3.429 10 O -0.515 6.515 11 N -0.710 5.710 12 C 0.088 3.912 13 C 0.089 3.911 14 H 0.105 0.895 15 O -0.552 6.552 16 C 0.127 3.873 17 N -0.726 5.726 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.929 5.929 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.024 4.024 27 C -0.095 4.095 28 C -0.151 4.151 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.410 0.590 35 H 0.406 0.594 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.375 0.625 39 H 0.024 0.976 40 H 0.029 0.971 41 H 0.389 0.611 42 H 0.255 0.745 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.316 -19.172 14.841 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.080 4.080 4 N -0.047 5.047 5 N -0.105 5.105 6 C 0.103 3.897 7 O -0.271 6.271 8 C -0.158 4.158 9 C 0.354 3.646 10 O -0.390 6.390 11 N -0.362 5.362 12 C -0.036 4.036 13 C 0.029 3.971 14 H 0.123 0.877 15 O -0.357 6.357 16 C -0.002 4.002 17 N -0.371 5.371 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.036 4.036 27 C -0.133 4.133 28 C -0.208 4.208 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.270 0.730 35 H 0.241 0.759 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.222 0.778 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.224 0.776 42 H 0.065 0.935 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.194 -19.635 15.943 26.587 hybrid contribution -0.490 1.427 -2.053 2.548 sum 7.704 -18.208 13.890 24.162 Atomic orbital electron populations 1.21770 0.93344 1.02848 1.02744 1.20530 0.97071 0.88858 1.04646 1.22775 0.97095 0.98973 0.89151 1.72844 1.06572 1.00989 1.24314 1.73075 1.09808 1.01291 1.26280 1.20843 0.92268 0.88487 0.88121 1.84764 1.35482 1.11732 1.95168 1.21352 1.02537 0.96515 0.95440 1.17645 0.84922 0.79154 0.82838 1.90853 1.22578 1.62959 1.62566 1.45934 1.14276 1.48298 1.27650 1.22243 0.99328 0.96034 0.85951 1.22391 0.95297 0.90192 0.89174 0.87741 1.86577 1.47537 1.41807 1.59796 1.21183 0.91849 0.94950 0.92198 1.42231 1.10733 1.60285 1.23824 1.19252 0.97687 1.23969 0.96658 0.91136 1.24770 0.96075 1.01117 0.98850 1.69686 1.02793 1.47338 1.37916 0.86110 0.77317 0.79539 0.83156 1.20524 1.21786 1.21770 1.21138 0.92929 0.91649 0.97836 1.20776 1.00331 1.00447 0.91711 1.21781 0.96554 1.00720 1.01738 0.92294 0.91199 0.91863 0.89229 0.88995 0.73040 0.75910 0.90507 0.89977 0.77788 0.95852 0.95334 0.77642 0.93473 0.88737 0.89733 0.91046 0.91495 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.78 37.16 0.36 -0.37 16 2 C -0.07 -0.41 5.56 -27.89 -0.16 -0.56 16 3 C 0.07 0.59 6.11 -82.48 -0.50 0.08 16 4 N -0.20 -2.33 11.40 33.56 0.38 -1.95 16 5 N -0.25 -3.19 11.52 30.73 0.35 -2.84 16 6 C 0.29 3.35 7.88 -16.44 -0.13 3.22 16 7 O -0.47 -4.89 13.09 -18.02 -0.24 -5.12 16 8 C -0.14 -1.55 5.69 -104.45 -0.59 -2.15 16 9 C 0.57 6.80 5.62 -12.34 -0.07 6.73 16 10 O -0.51 -8.01 17.11 5.32 0.09 -7.92 16 11 N -0.71 -7.16 5.50 -61.26 -0.34 -7.50 16 12 C 0.09 1.00 5.31 -4.04 -0.02 0.98 16 13 C 0.09 1.22 3.08 -26.74 -0.08 1.14 16 14 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 15 O -0.55 -7.86 13.03 -35.23 -0.46 -8.32 16 16 C 0.13 2.29 5.92 -4.05 -0.02 2.27 16 17 N -0.73 -17.61 5.49 -59.91 -0.33 -17.94 16 18 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 22 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C -0.02 -0.22 5.22 -103.84 -0.54 -0.76 16 27 C -0.09 -0.66 5.06 -27.88 -0.14 -0.81 16 28 C -0.15 -1.07 9.78 37.16 0.36 -0.70 16 29 H 0.06 0.28 7.43 -51.93 -0.39 -0.11 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.36 6.00 -51.93 -0.31 0.05 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.41 2.29 9.06 45.56 0.41 2.71 16 35 H 0.41 3.53 8.46 -40.82 -0.35 3.19 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.37 4.41 9.05 45.56 0.41 4.83 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.39 10.13 7.54 -40.82 -0.31 9.82 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.09 0.45 6.03 -51.93 -0.31 0.14 16 44 H 0.08 0.64 7.25 -51.93 -0.38 0.27 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.36 7.43 -51.93 -0.39 -0.02 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -35.81 397.39 -6.00 -41.81 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.37 Total: 11.99 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.78 Total: 1.81 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.80 Total: -57.22 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.60 Total: -21.36 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.81 -6.00 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268306508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.781 kcal (2) G-P(sol) polarization free energy of solvation -35.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds