Wall clock time and date at job start Tue Mar 31 2020 22:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50690 * 109.47500 * 2 1 4 4 N 1.31883 * 119.93706 * 89.99611 * 3 2 1 5 5 N 1.28273 * 122.62955 * 180.02562 * 4 3 2 6 6 C 1.32485 * 122.21604 * 359.97438 * 5 4 3 7 7 O 1.35443 * 120.25038 * 180.02562 * 6 5 4 8 8 C 1.40456 * 119.49523 * 0.02562 * 6 5 4 9 9 C 1.47828 * 121.17601 * 180.02562 * 8 6 5 10 10 O 1.21553 * 120.00225 * 89.99877 * 9 8 6 11 11 N 1.34777 * 119.99791 * 269.71839 * 9 8 6 12 12 C 1.46499 * 120.00199 * 180.27503 * 11 9 8 13 13 C 1.52997 * 109.47551 * 180.02562 * 12 11 9 14 14 H 1.09006 * 109.46907 * 305.00459 * 13 12 11 15 15 O 1.42899 * 109.47165 * 64.99775 * 13 12 11 16 16 C 1.52989 * 109.47435 * 185.00577 * 13 12 11 17 17 N 1.46500 * 109.47503 * 179.97438 * 16 13 12 18 18 C 1.36937 * 120.00241 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00088 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00000 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00067 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00213 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46704 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46853 * 120.00138 * 22 20 18 25 25 H 1.48502 * 109.47033 * 240.00433 * 22 20 18 26 26 C 1.38484 * 119.93376 * 270.28079 * 3 2 1 27 27 C 1.50700 * 121.05728 * 359.97438 * 26 3 2 28 28 C 1.52998 * 109.47453 * 270.27231 * 27 26 3 29 29 H 1.09005 * 109.46643 * 60.00000 * 1 2 3 30 30 H 1.08999 * 109.47459 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47133 * 300.00057 * 1 2 3 32 32 H 1.09005 * 109.47048 * 239.99217 * 2 1 3 33 33 H 1.09005 * 109.46643 * 120.00000 * 2 1 3 34 34 H 0.96704 * 114.00514 * 269.97786 * 7 6 5 35 35 H 0.97001 * 119.99727 * 0.28399 * 11 9 8 36 36 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 37 37 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 38 38 H 0.96700 * 113.99610 * 60.00555 * 15 13 12 39 39 H 1.09006 * 109.46977 * 299.99839 * 16 13 12 40 40 H 1.09002 * 109.47666 * 59.99555 * 16 13 12 41 41 H 0.97005 * 119.99460 * 359.97438 * 17 16 13 42 42 H 0.96998 * 120.00208 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.46878 * 30.26786 * 27 26 3 44 44 H 1.09002 * 109.47302 * 150.27061 * 27 26 3 45 45 H 1.08998 * 109.47840 * 179.97438 * 28 27 26 46 46 H 1.09003 * 109.46715 * 299.99654 * 28 27 26 47 47 H 1.09002 * 109.47508 * 59.99485 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2518 2.0412 1.1429 5 7 2.6785 3.2494 1.2031 6 6 2.9313 3.9642 0.1167 7 8 3.3814 5.2369 0.2267 8 6 2.7290 3.3921 -1.1501 9 6 2.9997 4.1556 -2.3866 10 8 4.1033 4.1181 -2.8948 11 7 2.0212 4.8886 -2.9537 12 6 2.2876 5.6405 -4.1825 13 6 1.0198 6.3813 -4.6122 14 1 0.1983 5.6711 -4.7067 15 8 0.6877 7.3658 -3.6312 16 6 1.2604 7.0648 -5.9596 17 7 0.0463 7.7737 -6.3714 18 6 0.0244 8.4645 -7.5536 19 1 0.9020 8.4864 -8.1826 20 6 -1.1263 9.1357 -7.9440 21 7 -2.1961 9.1086 -7.1776 22 14 -1.1565 10.0775 -9.5570 23 1 0.1624 9.9523 -10.2279 24 1 -2.2141 9.5184 -10.4368 25 1 -1.4418 11.5099 -9.2885 26 6 2.2573 2.0741 -1.2001 27 6 2.0081 1.3871 -2.5180 28 6 3.2818 0.6685 -2.9675 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5140 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.6793 5.9011 0.2582 35 1 1.1405 4.9185 -2.5481 36 1 3.0854 6.3609 -4.0019 37 1 2.5915 4.9520 -4.9710 38 1 1.3750 8.0322 -3.4944 39 1 2.0819 7.7751 -5.8652 40 1 1.5137 6.3139 -6.7080 41 1 -0.7421 7.7537 -5.8066 42 1 -3.0000 9.5779 -7.4502 43 1 1.2029 0.6614 -2.4029 44 1 1.7255 2.1277 -3.2662 45 1 3.1015 0.1712 -3.9205 46 1 4.0870 1.3943 -3.0827 47 1 3.5645 -0.0721 -2.2194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268306508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:51 Heat of formation + Delta-G solvation = -103.681255 kcal Electronic energy + Delta-G solvation = -29492.412193 eV Core-core repulsion = 25288.725113 eV Total energy + Delta-G solvation = -4203.687080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.78298 -40.80522 -39.11157 -38.94690 -36.94289 -36.11016 -35.45919 -34.74225 -33.20664 -32.34962 -31.07791 -30.62567 -27.69613 -26.45790 -26.15426 -24.58851 -23.52635 -22.94215 -22.80991 -21.64592 -20.15065 -19.56623 -19.24299 -18.82272 -17.86851 -17.29056 -17.17471 -16.67938 -16.43967 -16.08744 -15.99177 -15.63437 -15.52736 -15.27074 -15.06819 -14.87748 -14.65840 -14.53090 -14.18862 -13.88432 -13.73899 -13.60623 -13.32536 -13.28956 -13.03982 -12.96030 -12.79418 -12.63810 -12.34104 -12.13299 -12.02379 -11.98291 -11.86590 -11.81452 -11.72081 -11.15949 -11.02902 -10.95570 -10.62531 -10.58644 -10.35509 -9.01151 -7.95607 -5.24714 -0.75827 -0.47834 1.14053 1.48080 1.48321 1.58341 1.72120 2.00380 2.20372 2.55152 2.87176 3.15868 3.17783 3.36240 3.44277 3.48490 3.56384 3.71485 3.95075 4.00701 4.13427 4.18284 4.19624 4.31171 4.37773 4.38469 4.42261 4.54402 4.58847 4.67537 4.69824 4.91307 4.92486 4.93716 5.00210 5.06539 5.08765 5.18267 5.21347 5.26310 5.42600 5.48702 6.17250 6.25843 6.26414 6.76556 6.85641 7.33498 7.39651 8.08929 8.31445 9.27673 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.002236 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.463004 B =12521.633412 C =12865.594387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 C 0.070 3.930 4 N -0.225 5.225 5 N -0.282 5.282 6 C 0.284 3.716 7 O -0.478 6.478 8 C -0.157 4.157 9 C 0.581 3.419 10 O -0.554 6.554 11 N -0.695 5.695 12 C 0.101 3.899 13 C 0.109 3.891 14 H 0.105 0.895 15 O -0.563 6.563 16 C 0.121 3.879 17 N -0.740 5.740 18 C -0.245 4.245 19 H 0.076 0.924 20 C -0.075 4.075 21 N -0.967 5.967 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.293 1.293 25 H -0.294 1.294 26 C -0.015 4.015 27 C -0.095 4.095 28 C -0.149 4.149 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.427 0.573 35 H 0.415 0.585 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.386 0.614 39 H 0.030 0.970 40 H 0.036 0.964 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.124 0.876 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.036 0.964 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.461 -20.754 14.271 26.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.076 4.076 4 N -0.068 5.068 5 N -0.133 5.133 6 C 0.097 3.903 7 O -0.287 6.287 8 C -0.172 4.172 9 C 0.365 3.635 10 O -0.431 6.431 11 N -0.346 5.346 12 C -0.023 4.023 13 C 0.049 3.951 14 H 0.123 0.877 15 O -0.370 6.370 16 C -0.006 4.006 17 N -0.383 5.383 18 C -0.377 4.377 19 H 0.094 0.906 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.801 3.199 23 H -0.190 1.190 24 H -0.220 1.220 25 H -0.222 1.222 26 C -0.027 4.027 27 C -0.132 4.132 28 C -0.206 4.206 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.290 0.710 35 H 0.252 0.748 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.235 0.765 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.210 0.790 42 H 0.060 0.940 43 H 0.143 0.857 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.055 0.945 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.358 -21.212 15.398 27.512 hybrid contribution -0.488 1.861 -1.846 2.666 sum 7.870 -19.351 13.552 24.901 Atomic orbital electron populations 1.21774 0.92529 1.03969 1.02236 1.20716 0.97599 0.86718 1.06005 1.23292 0.95855 1.00162 0.88301 1.72770 1.07358 1.00900 1.25775 1.73007 1.11142 1.02089 1.27016 1.20901 0.92333 0.88780 0.88244 1.84718 1.36802 1.11974 1.95181 1.21312 1.03907 0.97412 0.94561 1.17685 0.84326 0.78755 0.82750 1.90836 1.24135 1.64383 1.63786 1.45754 1.14442 1.47401 1.27031 1.22008 0.97874 0.95983 0.86452 1.22100 0.96267 0.89773 0.86981 0.87744 1.86560 1.48508 1.42370 1.59542 1.21404 0.89625 0.94928 0.94647 1.42412 1.12265 1.60635 1.22982 1.19658 0.97555 1.23035 0.97460 0.90569 1.25568 0.96056 1.02899 1.02227 1.69832 1.03308 1.48871 1.39778 0.85096 0.77637 0.77704 0.79445 1.19018 1.22024 1.22154 1.21449 0.91383 0.90884 0.98962 1.20907 1.01241 1.00864 0.90197 1.21774 0.95464 1.00263 1.03095 0.91910 0.89261 0.93309 0.86923 0.88602 0.71026 0.74817 0.90369 0.89613 0.76531 0.95161 0.94625 0.79025 0.94017 0.85746 0.90232 0.89427 0.94487 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.78 71.98 0.70 -0.36 16 2 C -0.07 -0.63 5.56 29.85 0.17 -0.46 16 3 C 0.07 1.16 6.11 42.61 0.26 1.42 16 4 N -0.22 -5.09 11.40 -47.73 -0.54 -5.63 16 5 N -0.28 -7.17 11.52 -169.57 -1.95 -9.13 16 6 C 0.28 6.60 7.88 85.14 0.67 7.27 16 7 O -0.48 -10.07 13.09 -87.40 -1.14 -11.22 16 8 C -0.16 -3.32 5.69 -19.75 -0.11 -3.43 16 9 C 0.58 13.41 5.62 86.78 0.49 13.90 16 10 O -0.55 -17.09 17.11 -3.88 -0.07 -17.16 16 11 N -0.70 -13.11 5.50 -466.00 -2.56 -15.68 16 12 C 0.10 2.13 5.31 86.38 0.46 2.59 16 13 C 0.11 2.81 3.08 30.59 0.09 2.91 16 14 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 15 O -0.56 -15.33 13.03 -148.98 -1.94 -17.28 16 16 C 0.12 4.22 5.92 86.38 0.51 4.73 16 17 N -0.74 -35.55 5.49 -343.46 -1.89 -37.44 16 18 C -0.25 -13.25 9.99 84.03 0.84 -12.41 16 19 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.08 -4.22 5.50 84.86 0.47 -3.76 16 21 N -0.97 -58.29 13.06 21.65 0.28 -58.00 16 22 Si 0.97 45.17 29.55 68.60 2.03 47.19 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 C -0.02 -0.25 5.22 -19.36 -0.10 -0.35 16 27 C -0.09 -1.10 5.06 29.85 0.15 -0.95 16 28 C -0.15 -1.80 9.78 71.98 0.70 -1.10 16 29 H 0.06 0.41 7.43 -2.38 -0.02 0.39 16 30 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.11 0.49 6.00 -2.38 -0.01 0.47 16 33 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.43 4.74 9.06 -74.05 -0.67 4.07 16 35 H 0.42 6.58 8.46 -92.71 -0.78 5.79 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.39 8.58 9.05 -74.06 -0.67 7.91 16 39 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.38 19.71 7.54 -92.70 -0.70 19.01 16 42 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.12 0.71 6.03 -2.39 -0.01 0.70 16 44 H 0.08 1.04 7.25 -2.39 -0.02 1.02 16 45 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.07 0.69 7.43 -2.39 -0.02 0.67 16 Total: -1.00 -77.57 397.39 -4.26 -81.83 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: -1.77 Total: 32.49 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 5.30 Total: 10.01 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -6.67 Total: -125.87 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -3.15 Total: -45.65 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -77.57 -4.26 -81.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268306508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.851 kcal (2) G-P(sol) polarization free energy of solvation -77.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds