Wall clock time and date at job start Tue Mar 31 2020 21:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29943 * 126.28256 * 2 1 4 4 O 1.21310 * 110.25118 * 179.68996 * 3 2 1 5 5 C 1.33646 * 109.80763 * 0.47175 * 4 3 2 6 6 C 1.50696 * 126.55040 * 179.80461 * 5 4 3 7 7 C 1.53002 * 109.46800 * 269.68444 * 6 5 4 8 8 C 1.53001 * 109.47319 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47286 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99944 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99882 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00226 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47236 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.51349 * 304.89470 * 13 12 11 15 15 C 1.53297 * 109.51382 * 184.74216 * 13 12 11 16 16 N 1.47150 * 108.38747 * 187.77168 * 15 13 12 17 17 C 1.36932 * 120.98347 * 230.55445 * 16 15 13 18 18 H 1.07996 * 120.00178 * 153.72679 * 17 16 15 19 19 C 1.38811 * 120.00286 * 333.73680 * 17 16 15 20 20 N 1.31611 * 120.00572 * 160.00137 * 19 17 16 21 21 Si 1.86802 * 119.99699 * 340.00033 * 19 17 16 22 22 H 1.48494 * 109.47336 * 91.86668 * 21 19 17 23 23 H 1.48500 * 109.46946 * 211.86744 * 21 19 17 24 24 H 1.48498 * 109.46960 * 331.86416 * 21 19 17 25 25 C 1.47155 * 118.03466 * 50.53402 * 16 15 13 26 26 C 1.53287 * 108.38629 * 309.46789 * 25 16 15 27 27 O 1.42962 * 109.51589 * 64.99368 * 13 12 11 28 28 N 1.31135 * 106.89244 * 359.53693 * 5 4 3 29 29 H 1.09004 * 109.46848 * 270.01438 * 1 2 3 30 30 H 1.08997 * 109.47689 * 30.01800 * 1 2 3 31 31 H 1.09000 * 109.47125 * 150.02218 * 1 2 3 32 32 H 1.09004 * 109.47245 * 149.68894 * 6 5 4 33 33 H 1.08996 * 109.47413 * 29.68532 * 6 5 4 34 34 H 1.09004 * 109.46853 * 60.00211 * 7 6 5 35 35 H 1.08996 * 109.47210 * 300.00213 * 7 6 5 36 36 H 1.09001 * 109.47102 * 300.00756 * 8 7 6 37 37 H 1.09006 * 109.46660 * 59.99877 * 8 7 6 38 38 H 0.97005 * 119.99831 * 359.97438 * 11 9 8 39 39 H 1.09008 * 109.46258 * 299.99985 * 12 11 9 40 40 H 1.08994 * 109.47180 * 59.99700 * 12 11 9 41 41 H 1.09004 * 109.67977 * 307.49961 * 15 13 12 42 42 H 1.08999 * 109.68025 * 68.04658 * 15 13 12 43 43 H 0.97005 * 120.00818 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.67796 * 189.73953 * 25 16 15 45 45 H 1.09004 * 109.71003 * 69.20840 * 25 16 15 46 46 H 1.09003 * 109.51309 * 292.37939 * 26 25 16 47 47 H 1.08998 * 109.51674 * 172.22709 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7125 0.0062 5 6 3.5300 -0.6211 0.0005 6 6 4.7970 -1.4368 0.0009 7 6 5.2262 -1.7130 -1.4415 8 6 6.5130 -2.5407 -1.4412 9 6 6.9353 -2.8133 -2.8619 10 8 6.2726 -2.3871 -3.7839 11 7 8.0494 -3.5307 -3.1078 12 6 8.4604 -3.7953 -4.4889 13 6 9.7463 -4.6241 -4.4885 14 1 10.5087 -4.1130 -3.9005 15 6 10.2419 -4.8011 -5.9283 16 7 11.3653 -5.7514 -5.9190 17 6 12.5485 -5.4503 -6.5391 18 1 13.4674 -5.9045 -6.1989 19 6 12.5670 -4.5612 -7.6049 20 7 13.6907 -3.9679 -7.9477 21 14 10.9968 -4.2067 -8.5528 22 1 10.3138 -3.0304 -7.9571 23 1 11.3291 -3.9202 -9.9715 24 1 10.0994 -5.3878 -8.4834 25 6 11.1799 -7.0347 -5.2232 26 6 10.6387 -6.7490 -3.8179 27 8 9.4861 -5.9092 -3.9190 28 7 2.3030 -1.0840 0.0003 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 4.6207 -2.3818 0.5148 33 1 5.5842 -0.8851 0.5148 34 1 5.4025 -0.7680 -1.9554 35 1 4.4390 -2.2647 -1.9554 36 1 7.2999 -1.9886 -0.9273 37 1 6.3370 -3.4857 -0.9271 38 1 8.5797 -3.8712 -2.3703 39 1 7.6730 -4.3470 -5.0028 40 1 8.6368 -2.8504 -5.0029 41 1 9.4354 -5.1920 -6.5487 42 1 10.5763 -3.8413 -6.3221 43 1 13.7037 -3.3468 -8.6928 44 1 12.1354 -7.5541 -5.1501 45 1 10.4682 -7.6512 -5.7724 46 1 11.4049 -6.2459 -3.2279 47 1 10.3644 -7.6872 -3.3355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270701932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:37 Heat of formation + Delta-G solvation = 3.395826 kcal Electronic energy + Delta-G solvation = -28476.655530 eV Core-core repulsion = 24277.611661 eV Total energy + Delta-G solvation = -4199.043869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.93386 -39.88997 -38.77796 -36.57540 -35.82002 -34.98839 -34.53818 -32.91582 -31.63737 -31.42523 -29.73091 -28.85043 -27.66013 -25.66654 -24.11184 -23.66709 -23.07611 -21.72345 -21.44060 -20.54085 -19.96157 -18.44742 -17.87115 -17.25287 -17.03403 -16.41474 -16.05566 -15.99677 -15.57965 -15.31138 -14.72235 -14.54309 -14.24696 -14.14714 -14.02748 -13.95973 -13.65554 -13.45546 -13.31591 -13.06668 -12.82060 -12.58067 -12.42886 -12.13909 -12.06217 -11.92746 -11.78161 -11.65460 -11.39846 -11.27180 -11.19743 -10.88362 -10.45570 -10.36038 -10.23938 -9.98648 -9.85816 -9.59042 -9.47066 -9.04822 -8.64696 -7.10357 -6.04988 -3.42912 0.77411 1.84436 2.41095 2.60308 3.10997 3.24844 3.28332 3.43633 3.45377 3.66655 3.98518 4.33335 4.41510 4.43272 4.48616 4.69705 4.70159 4.89431 4.93203 4.96117 5.03645 5.06847 5.18271 5.20323 5.26465 5.31321 5.35147 5.49899 5.54170 5.58531 5.68959 5.71330 5.76570 5.78792 5.84868 5.96297 6.05305 6.12839 6.36926 6.42321 6.45820 6.64908 7.48405 7.52270 7.78128 7.80773 8.19433 8.20625 8.78008 9.58949 9.94652 11.10390 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021988 B = 0.001803 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.109309 B =15523.636732 C =16172.003735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.388 5.388 4 O 0.077 5.923 5 C 0.189 3.811 6 C -0.029 4.029 7 C -0.103 4.103 8 C -0.138 4.138 9 C 0.509 3.491 10 O -0.545 6.545 11 N -0.720 5.720 12 C 0.127 3.873 13 C 0.065 3.935 14 H 0.067 0.933 15 C 0.101 3.899 16 N -0.606 5.606 17 C -0.265 4.265 18 H 0.089 0.911 19 C 0.025 3.975 20 N -0.905 5.905 21 Si 0.880 3.120 22 H -0.286 1.286 23 H -0.300 1.300 24 H -0.270 1.270 25 C 0.112 3.888 26 C 0.048 3.952 27 O -0.386 6.386 28 N -0.483 5.483 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.404 0.596 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.083 0.917 43 H 0.264 0.736 44 H 0.072 0.928 45 H 0.032 0.968 46 H 0.049 0.951 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.929 3.576 20.186 27.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.097 5.097 4 O 0.019 5.981 5 C -0.031 4.031 6 C -0.068 4.068 7 C -0.142 4.142 8 C -0.178 4.178 9 C 0.295 3.705 10 O -0.422 6.422 11 N -0.372 5.372 12 C 0.003 3.997 13 C 0.006 3.994 14 H 0.085 0.915 15 C -0.025 4.025 16 N -0.331 5.331 17 C -0.393 4.393 18 H 0.106 0.894 19 C -0.174 4.174 20 N -0.547 5.547 21 Si 0.710 3.290 22 H -0.213 1.213 23 H -0.228 1.228 24 H -0.195 1.195 25 C -0.014 4.014 26 C -0.030 4.030 27 O -0.305 6.305 28 N -0.217 5.217 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.238 0.762 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.050 0.950 46 H 0.067 0.933 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.101 4.428 19.431 28.306 hybrid contribution -0.048 0.076 -0.449 0.458 sum -20.148 4.504 18.982 28.046 Atomic orbital electron populations 1.20146 0.82925 1.04791 1.04270 1.25932 1.00672 0.83524 1.00450 1.74649 0.89413 1.23960 1.21652 1.85299 1.22345 1.24836 1.65613 1.28809 0.97050 0.82184 0.95059 1.20338 0.87980 0.98350 1.00110 1.21332 0.97338 1.01898 0.93597 1.21607 0.98858 1.02553 0.94809 1.20570 0.80494 0.77987 0.91437 1.90728 1.53551 1.51408 1.46529 1.45957 1.26999 1.54860 1.09343 1.21435 0.96170 0.99214 0.82897 1.22868 0.95149 0.84245 0.97187 0.91504 1.21927 0.91329 0.95784 0.93495 1.44339 1.12661 1.12747 1.63370 1.18907 0.84594 1.25624 1.10162 0.89355 1.25255 0.96421 0.98339 0.97387 1.69811 1.26269 1.28922 1.29719 0.87029 0.84273 0.78256 0.79447 1.21332 1.22821 1.19463 1.21638 0.99656 0.88567 0.91541 1.23054 0.87985 0.93809 0.98132 1.87809 1.33792 1.26183 1.82744 1.71909 0.99773 1.29416 1.20599 0.89321 0.89475 0.88950 0.86906 0.87611 0.90171 0.90019 0.88263 0.88258 0.76198 0.90652 0.89953 0.94467 0.89918 0.92567 0.90947 0.95040 0.93278 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 36.01 0.38 0.00 16 2 C 0.17 1.67 8.22 -156.38 -1.28 0.38 16 3 N -0.39 -4.34 12.16 30.90 0.38 -3.96 16 4 O 0.08 0.78 11.31 18.09 0.20 0.99 16 5 C 0.19 1.65 7.77 -13.05 -0.10 1.55 16 6 C -0.03 -0.14 5.84 -27.88 -0.16 -0.31 16 7 C -0.10 -0.74 4.49 -26.73 -0.12 -0.86 16 8 C -0.14 -0.89 5.70 -27.88 -0.16 -1.05 16 9 C 0.51 5.99 7.83 -10.99 -0.09 5.91 16 10 O -0.54 -8.85 15.98 5.56 0.09 -8.76 16 11 N -0.72 -8.47 5.50 -60.30 -0.33 -8.80 16 12 C 0.13 1.90 5.35 -4.04 -0.02 1.88 16 13 C 0.07 1.09 2.81 -26.58 -0.07 1.02 16 14 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 15 C 0.10 2.14 3.67 -3.53 -0.01 2.12 16 16 N -0.61 -13.97 2.83 -171.83 -0.49 -14.45 16 17 C -0.27 -7.19 10.10 -15.06 -0.15 -7.34 16 18 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 19 C 0.03 0.72 5.26 -17.43 -0.09 0.63 16 20 N -0.90 -27.10 13.97 55.49 0.78 -26.32 16 21 Si 0.88 22.01 24.29 -169.99 -4.13 17.88 16 22 H -0.29 -6.84 6.58 56.52 0.37 -6.46 16 23 H -0.30 -7.67 7.11 56.52 0.40 -7.26 16 24 H -0.27 -6.69 6.55 56.52 0.37 -6.32 16 25 C 0.11 2.09 6.73 -3.54 -0.02 2.07 16 26 C 0.05 0.74 6.98 37.31 0.26 1.00 16 27 O -0.39 -6.27 10.33 -35.23 -0.36 -6.63 16 28 N -0.48 -5.00 11.55 -9.86 -0.11 -5.12 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.40 3.76 8.47 -40.82 -0.35 3.41 16 39 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.04 0.81 6.87 -51.93 -0.36 0.45 16 42 H 0.08 1.89 4.61 -51.93 -0.24 1.65 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.07 1.30 7.96 -51.93 -0.41 0.89 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -35.66 385.73 -7.13 -42.79 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.31 Total: -0.42 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -1.65 Total: 6.99 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.22 Total: -58.66 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.07 Total: -14.41 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.13 Total: 17.88 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.66 -7.13 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270701932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.188 kcal (2) G-P(sol) polarization free energy of solvation -35.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds