Wall clock time and date at job start Tue Mar 31 2020 21:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29943 * 126.28256 * 2 1 4 4 O 1.21310 * 110.25118 * 179.68996 * 3 2 1 5 5 C 1.33646 * 109.80763 * 0.47175 * 4 3 2 6 6 C 1.50696 * 126.55040 * 179.80461 * 5 4 3 7 7 C 1.53002 * 109.46800 * 269.68444 * 6 5 4 8 8 C 1.53001 * 109.47319 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47286 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99944 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99882 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00226 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47236 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.51349 * 304.89470 * 13 12 11 15 15 C 1.53297 * 109.51382 * 184.74216 * 13 12 11 16 16 N 1.47150 * 108.38747 * 187.77168 * 15 13 12 17 17 C 1.36932 * 120.98347 * 230.55445 * 16 15 13 18 18 H 1.07996 * 120.00178 * 153.72679 * 17 16 15 19 19 C 1.38811 * 120.00286 * 333.73680 * 17 16 15 20 20 N 1.31611 * 120.00572 * 160.00137 * 19 17 16 21 21 Si 1.86802 * 119.99699 * 340.00033 * 19 17 16 22 22 H 1.48494 * 109.47336 * 91.86668 * 21 19 17 23 23 H 1.48500 * 109.46946 * 211.86744 * 21 19 17 24 24 H 1.48498 * 109.46960 * 331.86416 * 21 19 17 25 25 C 1.47155 * 118.03466 * 50.53402 * 16 15 13 26 26 C 1.53287 * 108.38629 * 309.46789 * 25 16 15 27 27 O 1.42962 * 109.51589 * 64.99368 * 13 12 11 28 28 N 1.31135 * 106.89244 * 359.53693 * 5 4 3 29 29 H 1.09004 * 109.46848 * 270.01438 * 1 2 3 30 30 H 1.08997 * 109.47689 * 30.01800 * 1 2 3 31 31 H 1.09000 * 109.47125 * 150.02218 * 1 2 3 32 32 H 1.09004 * 109.47245 * 149.68894 * 6 5 4 33 33 H 1.08996 * 109.47413 * 29.68532 * 6 5 4 34 34 H 1.09004 * 109.46853 * 60.00211 * 7 6 5 35 35 H 1.08996 * 109.47210 * 300.00213 * 7 6 5 36 36 H 1.09001 * 109.47102 * 300.00756 * 8 7 6 37 37 H 1.09006 * 109.46660 * 59.99877 * 8 7 6 38 38 H 0.97005 * 119.99831 * 359.97438 * 11 9 8 39 39 H 1.09008 * 109.46258 * 299.99985 * 12 11 9 40 40 H 1.08994 * 109.47180 * 59.99700 * 12 11 9 41 41 H 1.09004 * 109.67977 * 307.49961 * 15 13 12 42 42 H 1.08999 * 109.68025 * 68.04658 * 15 13 12 43 43 H 0.97005 * 120.00818 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.67796 * 189.73953 * 25 16 15 45 45 H 1.09004 * 109.71003 * 69.20840 * 25 16 15 46 46 H 1.09003 * 109.51309 * 292.37939 * 26 25 16 47 47 H 1.08998 * 109.51674 * 172.22709 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7125 0.0062 5 6 3.5300 -0.6211 0.0005 6 6 4.7970 -1.4368 0.0009 7 6 5.2262 -1.7130 -1.4415 8 6 6.5130 -2.5407 -1.4412 9 6 6.9353 -2.8133 -2.8619 10 8 6.2726 -2.3871 -3.7839 11 7 8.0494 -3.5307 -3.1078 12 6 8.4604 -3.7953 -4.4889 13 6 9.7463 -4.6241 -4.4885 14 1 10.5087 -4.1130 -3.9005 15 6 10.2419 -4.8011 -5.9283 16 7 11.3653 -5.7514 -5.9190 17 6 12.5485 -5.4503 -6.5391 18 1 13.4674 -5.9045 -6.1989 19 6 12.5670 -4.5612 -7.6049 20 7 13.6907 -3.9679 -7.9477 21 14 10.9968 -4.2067 -8.5528 22 1 10.3138 -3.0304 -7.9571 23 1 11.3291 -3.9202 -9.9715 24 1 10.0994 -5.3878 -8.4834 25 6 11.1799 -7.0347 -5.2232 26 6 10.6387 -6.7490 -3.8179 27 8 9.4861 -5.9092 -3.9190 28 7 2.3030 -1.0840 0.0003 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 4.6207 -2.3818 0.5148 33 1 5.5842 -0.8851 0.5148 34 1 5.4025 -0.7680 -1.9554 35 1 4.4390 -2.2647 -1.9554 36 1 7.2999 -1.9886 -0.9273 37 1 6.3370 -3.4857 -0.9271 38 1 8.5797 -3.8712 -2.3703 39 1 7.6730 -4.3470 -5.0028 40 1 8.6368 -2.8504 -5.0029 41 1 9.4354 -5.1920 -6.5487 42 1 10.5763 -3.8413 -6.3221 43 1 13.7037 -3.3468 -8.6928 44 1 12.1354 -7.5541 -5.1501 45 1 10.4682 -7.6512 -5.7724 46 1 11.4049 -6.2459 -3.2279 47 1 10.3644 -7.6872 -3.3355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270701932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:36 Heat of formation + Delta-G solvation = -25.473494 kcal Electronic energy + Delta-G solvation = -28477.907398 eV Core-core repulsion = 24277.611661 eV Total energy + Delta-G solvation = -4200.295737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.63638 -40.94072 -40.11237 -37.24457 -36.65737 -36.35013 -35.79562 -33.65595 -33.61277 -32.69019 -30.31187 -29.73320 -29.01954 -27.07308 -25.33342 -24.86630 -23.89965 -23.00108 -22.06909 -21.82542 -21.14189 -19.17401 -19.02570 -18.59768 -18.06057 -17.63174 -17.42174 -16.96019 -16.79084 -16.12115 -16.07908 -15.82211 -15.48735 -15.35868 -15.20643 -14.81221 -14.54497 -14.49664 -14.31229 -14.01369 -13.84736 -13.68752 -13.51014 -13.41032 -13.33513 -12.94324 -12.73768 -12.58488 -12.39410 -12.31825 -12.26912 -12.10697 -12.10439 -11.70141 -11.62969 -11.40330 -11.13732 -10.97971 -10.85359 -10.52447 -10.10165 -8.99559 -8.22598 -5.55540 0.10294 1.15738 1.23916 1.37186 1.43836 1.71546 1.82420 2.20656 2.34429 2.67892 2.70695 2.97955 3.06432 3.20855 3.71210 3.82652 3.89953 3.96510 4.04498 4.09676 4.13258 4.32117 4.37388 4.43063 4.44511 4.49506 4.54076 4.55147 4.59141 4.66020 4.67768 4.71453 4.74929 4.87024 4.90217 4.92895 4.97356 5.06327 5.16726 5.17926 5.29136 5.43169 5.76237 6.06140 6.20005 6.61772 6.79525 7.12560 7.32080 7.51637 7.92470 8.96515 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021988 B = 0.001803 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.109309 B =15523.636732 C =16172.003735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.158 3.842 3 N -0.416 5.416 4 O 0.065 5.935 5 C 0.193 3.807 6 C -0.021 4.021 7 C -0.098 4.098 8 C -0.125 4.125 9 C 0.503 3.497 10 O -0.597 6.597 11 N -0.711 5.711 12 C 0.134 3.866 13 C 0.083 3.917 14 H 0.074 0.926 15 C 0.094 3.906 16 N -0.622 5.622 17 C -0.250 4.250 18 H 0.063 0.937 19 C -0.028 4.028 20 N -0.950 5.950 21 Si 0.935 3.065 22 H -0.272 1.272 23 H -0.309 1.309 24 H -0.267 1.267 25 C 0.102 3.898 26 C 0.056 3.944 27 O -0.381 6.381 28 N -0.509 5.509 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.419 0.581 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.032 0.968 42 H 0.062 0.938 43 H 0.263 0.737 44 H 0.074 0.926 45 H 0.034 0.966 46 H 0.055 0.945 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.260 2.664 23.155 30.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 N -0.128 5.128 4 O 0.010 5.990 5 C -0.027 4.027 6 C -0.059 4.059 7 C -0.137 4.137 8 C -0.164 4.164 9 C 0.292 3.708 10 O -0.478 6.478 11 N -0.363 5.363 12 C 0.009 3.991 13 C 0.023 3.977 14 H 0.091 0.909 15 C -0.032 4.032 16 N -0.348 5.348 17 C -0.379 4.379 18 H 0.081 0.919 19 C -0.224 4.224 20 N -0.596 5.596 21 Si 0.764 3.236 22 H -0.199 1.199 23 H -0.238 1.238 24 H -0.192 1.192 25 C -0.022 4.022 26 C -0.022 4.022 27 O -0.300 6.300 28 N -0.243 5.243 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.256 0.744 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.441 3.477 22.465 31.249 hybrid contribution 0.399 0.247 -1.339 1.419 sum -21.042 3.724 21.126 30.049 Atomic orbital electron populations 1.20333 0.80716 1.05536 1.05579 1.26633 1.02176 0.83233 0.99373 1.74633 0.89937 1.24929 1.23301 1.85255 1.22096 1.25626 1.66041 1.29589 0.97925 0.81881 0.93282 1.20557 0.87188 0.99335 0.98851 1.21213 0.97166 1.00703 0.94649 1.21656 0.99057 1.04465 0.91233 1.21568 0.79448 0.76552 0.93236 1.90716 1.55036 1.53326 1.48686 1.45830 1.27368 1.54876 1.08274 1.21122 0.94882 0.98209 0.84914 1.22548 0.95950 0.85020 0.94141 0.90850 1.21948 0.90433 0.94299 0.96503 1.44487 1.11804 1.14987 1.63473 1.18891 0.85503 1.23959 1.09534 0.91926 1.25793 0.98779 0.99169 0.98622 1.69921 1.28287 1.30668 1.30737 0.86126 0.81245 0.78602 0.77597 1.19886 1.23764 1.19224 1.21910 1.00255 0.86731 0.93328 1.23115 0.87849 0.95441 0.95751 1.87834 1.34233 1.25814 1.82143 1.71932 1.00620 1.29905 1.21837 0.87627 0.88705 0.88170 0.84587 0.84201 0.92189 0.92715 0.84606 0.84990 0.74373 0.91909 0.90976 0.95004 0.91985 0.92806 0.90728 0.94768 0.92677 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.51 71.24 0.75 0.05 16 2 C 0.16 3.09 8.22 138.47 1.14 4.23 16 3 N -0.42 -9.26 12.16 -60.29 -0.73 -10.00 16 4 O 0.06 1.29 11.31 74.80 0.85 2.13 16 5 C 0.19 3.10 7.77 88.38 0.69 3.79 16 6 C -0.02 -0.14 5.84 29.85 0.17 0.04 16 7 C -0.10 -1.21 4.49 30.60 0.14 -1.07 16 8 C -0.12 -1.11 5.70 29.85 0.17 -0.94 16 9 C 0.50 10.73 7.83 87.66 0.69 11.42 16 10 O -0.60 -19.17 15.98 -3.03 -0.05 -19.22 16 11 N -0.71 -14.78 5.50 -463.07 -2.55 -17.33 16 12 C 0.13 3.83 5.35 86.38 0.46 4.29 16 13 C 0.08 2.62 2.81 30.69 0.09 2.70 16 14 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 15 C 0.09 3.89 3.67 86.35 0.32 4.20 16 16 N -0.62 -28.18 2.83 -697.55 -1.98 -30.16 16 17 C -0.25 -13.70 10.10 84.03 0.85 -12.85 16 18 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 19 C -0.03 -1.61 5.26 84.86 0.45 -1.17 16 20 N -0.95 -58.48 13.97 21.65 0.30 -58.17 16 21 Si 0.93 46.34 24.29 68.60 1.67 48.00 16 22 H -0.27 -12.73 6.58 99.48 0.65 -12.07 16 23 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 24 H -0.27 -12.96 6.55 99.48 0.65 -12.31 16 25 C 0.10 3.63 6.73 86.35 0.58 4.21 16 26 C 0.06 1.50 6.98 72.08 0.50 2.00 16 27 O -0.38 -11.07 10.33 -148.98 -1.54 -12.61 16 28 N -0.51 -10.10 11.55 -303.17 -3.50 -13.60 16 29 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 35 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 36 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.13 0.43 8.14 -2.38 -0.02 0.41 16 38 H 0.42 6.11 8.47 -92.70 -0.79 5.32 16 39 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.03 1.35 6.87 -2.38 -0.02 1.34 16 42 H 0.06 2.81 4.61 -2.39 -0.01 2.80 16 43 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 44 H 0.07 2.58 7.96 -2.39 -0.02 2.56 16 45 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 47 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -81.56 385.73 -0.45 -82.01 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.10 Total: 8.05 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 6.99 Total: 20.89 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -8.46 Total: -129.26 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.74 Total: -29.70 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.67 Total: 48.00 kcal Total: -81.56 -0.45 -82.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270701932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.537 kcal (2) G-P(sol) polarization free energy of solvation -81.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds