Wall clock time and date at job start Tue Mar 31 2020 22:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47086 * 2 1 4 4 O 1.33494 * 126.82966 * 270.03091 * 3 2 1 5 5 N 1.20652 * 113.15611 * 179.73434 * 4 3 2 6 6 C 1.30018 * 112.30223 * 359.97438 * 5 4 3 7 7 C 1.37362 * 126.82750 * 89.70712 * 3 2 1 8 8 C 1.47395 * 128.56587 * 0.24726 * 7 3 2 9 9 O 1.21612 * 120.00053 * 359.97438 * 8 7 3 10 10 N 1.34776 * 120.00358 * 179.97438 * 8 7 3 11 11 C 1.46492 * 120.00356 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47357 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.47341 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.47029 * 304.99752 * 13 12 11 15 15 C 1.52998 * 109.47182 * 185.00183 * 13 12 11 16 16 N 1.46901 * 109.47026 * 65.00022 * 13 12 11 17 17 C 1.46898 * 110.99829 * 205.00157 * 16 13 12 18 18 C 1.50705 * 109.47327 * 179.97438 * 17 16 13 19 19 O 1.21286 * 119.99644 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99836 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99341 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00436 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99826 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00015 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00059 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46929 * 60.00449 * 25 23 21 27 27 H 1.48499 * 109.46947 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47427 * 300.00043 * 25 23 21 29 29 H 1.09008 * 109.46622 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47237 * 299.99392 * 1 2 3 31 31 H 1.08993 * 109.47194 * 60.00092 * 1 2 3 32 32 H 1.09000 * 109.47237 * 240.00608 * 2 1 3 33 33 H 1.08998 * 109.47630 * 120.00072 * 2 1 3 34 34 H 1.08002 * 127.33191 * 180.02562 * 6 5 4 35 35 H 0.97004 * 119.99281 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.47135 * 299.99967 * 11 10 8 37 37 H 1.09008 * 109.47208 * 59.99907 * 11 10 8 38 38 H 1.08998 * 109.47078 * 300.00132 * 12 11 10 39 39 H 1.08995 * 109.47148 * 60.00075 * 12 11 10 40 40 H 1.09003 * 109.46787 * 299.99718 * 15 13 12 41 41 H 1.08994 * 109.47378 * 59.99436 * 15 13 12 42 42 H 1.08996 * 109.47133 * 180.02562 * 15 13 12 43 43 H 1.00907 * 111.00075 * 328.95332 * 16 13 12 44 44 H 1.09006 * 109.47321 * 299.99996 * 17 16 13 45 45 H 1.09003 * 109.47598 * 59.99799 * 17 16 13 46 46 H 0.96991 * 120.00336 * 0.02562 * 20 18 17 47 47 H 0.96998 * 120.00361 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2985 2.1755 -1.0685 5 7 2.6846 3.2824 -0.7833 6 6 2.7457 3.4677 0.5021 7 6 2.3015 2.1990 1.0995 8 6 2.1754 1.8493 2.5258 9 8 1.7872 0.7430 2.8486 10 7 2.4903 2.7557 3.4723 11 6 2.3656 2.4080 4.8899 12 6 2.7829 3.6045 5.7472 13 6 2.6532 3.2411 7.2278 14 1 1.6396 2.8945 7.4294 15 6 2.9501 4.4742 8.0835 16 7 3.6095 2.1755 7.5560 17 6 3.1555 1.4003 8.7183 18 6 4.1592 0.3186 9.0240 19 8 5.1551 0.2049 8.3411 20 7 3.9507 -0.5218 10.0568 21 6 4.8642 -1.5055 10.3351 22 1 5.7506 -1.6073 9.7265 23 6 4.6491 -2.3724 11.3996 24 7 3.5703 -2.2489 12.1398 25 14 5.8933 -3.7132 11.7784 26 1 7.2101 -3.0959 12.0790 27 1 5.4346 -4.4963 12.9537 28 1 6.0247 -4.6127 10.6042 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.0566 4.3626 1.0209 35 1 2.8003 3.6380 3.2147 36 1 1.3306 2.1462 5.1100 37 1 3.0108 1.5584 5.1138 38 1 3.8179 3.8659 5.5269 39 1 2.1381 4.4543 5.5234 40 1 3.9637 4.8208 7.8819 41 1 2.2405 5.2649 7.8399 42 1 2.8581 4.2152 9.1382 43 1 3.7689 1.5751 6.7608 44 1 3.0586 2.0607 9.5801 45 1 2.1891 0.9469 8.4977 46 1 3.1545 -0.4307 10.6031 47 1 3.4203 -2.8537 12.8831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274797789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:32 Heat of formation + Delta-G solvation = -50.526433 kcal Electronic energy + Delta-G solvation = -28400.989231 eV Core-core repulsion = 24199.607117 eV Total energy + Delta-G solvation = -4201.382114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.98743 -40.77201 -40.20149 -38.40850 -36.16967 -35.86165 -35.54070 -34.69943 -33.32539 -32.59075 -31.39882 -29.91568 -28.07503 -26.37877 -25.67909 -24.99599 -24.04663 -22.43402 -21.77889 -21.18662 -20.98421 -19.92535 -19.08003 -18.77500 -17.86035 -17.52312 -17.24936 -16.91228 -16.69207 -16.41677 -16.06332 -15.89518 -15.59610 -15.44473 -15.20275 -14.77323 -14.63633 -14.43667 -14.26830 -14.05173 -13.58807 -13.50377 -13.34426 -13.15221 -12.90631 -12.86474 -12.58792 -12.51514 -12.44386 -12.26597 -12.16819 -12.11239 -11.91042 -11.75558 -11.51437 -11.50770 -11.22613 -10.62166 -10.34825 -10.15226 -10.02368 -9.31165 -8.47025 -5.95927 -0.04240 0.73772 1.39332 1.40922 1.52095 1.64880 2.04656 2.07377 2.12798 2.28893 2.93966 3.19326 3.20113 3.24834 3.50549 3.52654 3.79676 3.90174 4.01316 4.11573 4.15395 4.22304 4.30838 4.34763 4.45510 4.49779 4.55132 4.62345 4.68899 4.70007 4.79690 4.94380 4.97414 5.01096 5.05510 5.07939 5.20731 5.24954 5.32506 5.39995 5.49080 5.91638 6.14034 6.40242 6.42706 6.59600 7.06221 7.09701 7.11844 7.55497 8.10950 8.70168 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012804 B = 0.002028 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.221386 B =13802.127337 C =15231.848426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C 0.059 3.941 4 O 0.083 5.917 5 N -0.377 5.377 6 C 0.042 3.958 7 C -0.284 4.284 8 C 0.593 3.407 9 O -0.568 6.568 10 N -0.703 5.703 11 C 0.118 3.882 12 C -0.119 4.119 13 C 0.083 3.917 14 H 0.054 0.946 15 C -0.136 4.136 16 N -0.680 5.680 17 C 0.065 3.935 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.269 1.269 28 H -0.272 1.272 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.238 0.762 35 H 0.418 0.582 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.341 0.659 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 14.500 -21.301 27.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.091 4.091 3 C -0.006 4.006 4 O 0.027 5.973 5 N -0.085 5.085 6 C -0.141 4.141 7 C -0.291 4.291 8 C 0.380 3.620 9 O -0.448 6.448 10 N -0.355 5.355 11 C -0.006 4.006 12 C -0.156 4.156 13 C -0.027 4.027 14 H 0.072 0.928 15 C -0.194 4.194 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.198 1.198 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.254 0.746 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.129 0.871 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.162 0.838 44 H 0.122 0.878 45 H 0.081 0.919 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.392 14.693 -22.058 27.800 hybrid contribution -0.299 -1.186 1.092 1.640 sum -8.691 13.506 -20.966 26.411 Atomic orbital electron populations 1.21682 0.92087 1.03958 1.02062 1.20504 0.97777 0.84694 1.06108 1.25308 0.93601 0.96557 0.85109 1.84581 1.61705 1.17574 1.33393 1.73659 1.17612 0.98763 1.18469 1.26925 0.98822 0.99454 0.88945 1.22044 1.15917 0.96598 0.94579 1.17024 0.76898 0.84105 0.83925 1.90817 1.48295 1.22895 1.82818 1.45552 1.67326 1.17017 1.05611 1.21405 1.01254 0.98510 0.79424 1.21900 1.04098 0.97480 0.92166 1.21628 0.93749 0.92444 0.94849 0.92837 1.21779 1.02349 0.96267 0.99027 1.60251 1.47581 1.15722 1.07970 1.21581 0.94624 0.93884 0.96701 1.20934 0.89040 0.85117 0.82546 1.90483 1.32587 1.75215 1.52762 1.41934 1.22639 1.28495 1.27991 1.19625 1.03678 1.09370 1.13789 0.90415 1.26052 0.99286 1.00640 0.95340 1.69663 1.27257 1.39785 1.19354 0.84989 0.77886 0.77508 0.77958 1.19671 1.19363 1.19767 0.89548 0.93740 0.91231 0.86661 0.88376 0.74574 0.74482 0.91618 0.93619 0.89820 0.87118 0.92594 0.89866 0.93583 0.83833 0.87777 0.91931 0.76971 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.89 71.98 0.71 -1.13 16 2 C -0.05 -0.78 6.05 29.85 0.18 -0.60 16 3 C 0.06 1.04 6.80 25.48 0.17 1.21 16 4 O 0.08 1.51 11.06 76.98 0.85 2.36 16 5 N -0.38 -6.81 12.01 -54.19 -0.65 -7.46 16 6 C 0.04 0.56 11.95 87.29 1.04 1.61 16 7 C -0.28 -5.14 6.47 -18.75 -0.12 -5.26 16 8 C 0.59 12.96 7.81 86.65 0.68 13.64 16 9 O -0.57 -16.89 15.24 -4.07 -0.06 -16.95 16 10 N -0.70 -11.24 5.55 -466.41 -2.59 -13.83 16 11 C 0.12 2.25 5.50 86.38 0.48 2.72 16 12 C -0.12 -1.71 4.92 30.59 0.15 -1.56 16 13 C 0.08 1.67 2.65 44.92 0.12 1.79 16 14 H 0.05 1.03 7.80 -2.39 -0.02 1.01 16 15 C -0.14 -2.46 9.42 71.98 0.68 -1.78 16 16 N -0.68 -20.82 5.93 -495.55 -2.94 -23.76 16 17 C 0.06 2.23 5.96 85.56 0.51 2.74 16 18 C 0.44 21.22 7.82 87.66 0.69 21.91 16 19 O -0.62 -35.36 15.78 -3.05 -0.05 -35.41 16 20 N -0.57 -30.06 5.29 -306.98 -1.62 -31.68 16 21 C -0.34 -19.40 9.68 84.04 0.81 -18.59 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 24 N -0.92 -50.22 13.05 21.66 0.28 -49.94 16 25 Si 0.99 43.57 29.55 68.60 2.03 45.60 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 29 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 1.86 6.78 -2.39 -0.02 1.84 16 34 H 0.24 1.03 7.88 -2.91 -0.02 1.00 16 35 H 0.42 3.53 7.84 -92.70 -0.73 2.80 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.18 6.42 -2.38 -0.02 1.16 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 0.94 7.45 -2.39 -0.02 0.92 16 43 H 0.34 11.36 6.17 -89.69 -0.55 10.80 16 44 H 0.10 3.25 7.44 -2.38 -0.02 3.23 16 45 H 0.06 1.94 8.06 -2.39 -0.02 1.92 16 46 H 0.40 19.67 7.90 -92.71 -0.73 18.94 16 47 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -77.22 397.70 0.83 -76.39 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: -0.99 Total: 38.23 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 6.56 Total: 16.45 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -7.52 Total: -126.67 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: 0.74 Total: -50.00 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -77.22 0.83 -76.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274797789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.864 kcal (2) G-P(sol) polarization free energy of solvation -77.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds