Wall clock time and date at job start Tue Mar 31 2020 21:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30618 * 125.42292 * 2 1 4 4 C 1.33693 * 108.99591 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.27144 * 180.02562 * 4 3 2 6 6 C 1.36334 * 107.45488 * 359.97438 * 4 3 2 7 7 C 1.46720 * 126.64608 * 180.02562 * 6 4 3 8 8 O 1.21681 * 120.00190 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00132 * 180.02562 * 7 6 4 10 10 C 1.46500 * 120.00437 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.46496 * 34.99759 * 10 9 7 12 12 C 1.52996 * 109.47165 * 275.00279 * 10 9 7 13 13 C 1.52994 * 109.47421 * 154.99543 * 10 9 7 14 14 N 1.46902 * 109.47352 * 305.00088 * 13 10 9 15 15 C 1.46895 * 111.00301 * 293.95570 * 14 13 10 16 16 C 1.46898 * 111.00209 * 169.99876 * 14 13 10 17 17 C 1.50697 * 109.47233 * 190.00602 * 16 14 13 18 18 O 1.21293 * 120.00368 * 359.97438 * 17 16 14 19 19 N 1.34780 * 120.00099 * 180.02562 * 17 16 14 20 20 C 1.37099 * 120.00301 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99460 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00141 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99990 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99949 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47328 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46765 * 119.99962 * 24 22 20 27 27 H 1.48498 * 109.47361 * 240.00106 * 24 22 20 28 28 O 1.33667 * 125.42593 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.47235 * 269.97989 * 1 2 3 30 30 H 1.09003 * 109.46991 * 29.97925 * 1 2 3 31 31 H 1.09000 * 109.47093 * 149.98090 * 1 2 3 32 32 H 1.08997 * 109.47382 * 269.97687 * 5 4 3 33 33 H 1.09002 * 109.47206 * 29.97725 * 5 4 3 34 34 H 1.08999 * 109.46872 * 149.97267 * 5 4 3 35 35 H 0.97005 * 120.00027 * 359.97438 * 9 7 6 36 36 H 1.09006 * 109.47116 * 179.97438 * 12 10 9 37 37 H 1.09004 * 109.46989 * 299.99178 * 12 10 9 38 38 H 1.08996 * 109.47468 * 59.99698 * 12 10 9 39 39 H 1.09000 * 109.47188 * 65.00313 * 13 10 9 40 40 H 1.09004 * 109.47270 * 185.00439 * 13 10 9 41 41 H 1.09006 * 109.47401 * 59.99734 * 15 14 13 42 42 H 1.09004 * 109.47597 * 179.97438 * 15 14 13 43 43 H 1.09002 * 109.47370 * 299.99717 * 15 14 13 44 44 H 1.09002 * 109.46979 * 310.00371 * 16 14 13 45 45 H 1.09001 * 109.47189 * 69.99874 * 16 14 13 46 46 H 0.97005 * 119.99879 * 359.97438 * 19 17 16 47 47 H 0.96999 * 120.00346 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5464 0.6863 -0.0006 5 6 4.7451 1.5996 -0.0002 6 6 3.5708 -0.6768 -0.0003 7 6 4.7635 -1.5313 -0.0003 8 8 5.8718 -1.0290 0.0001 9 7 4.6316 -2.8725 -0.0006 10 6 5.8225 -3.7258 -0.0010 11 1 6.6083 -3.2531 0.5883 12 6 6.3100 -3.9202 -1.4382 13 6 5.4759 -5.0856 0.6084 14 7 4.8959 -4.8903 1.9439 15 6 5.8886 -4.3338 2.8727 16 6 4.3346 -6.1447 2.4627 17 6 3.5384 -5.8607 3.7103 18 8 3.4479 -4.7251 4.1266 19 7 2.9277 -6.8687 4.3641 20 6 2.2039 -6.6105 5.4994 21 1 2.1234 -5.5993 5.8700 22 6 1.5739 -7.6496 6.1731 23 7 1.6723 -8.8801 5.7224 24 14 0.5882 -7.2978 7.7204 25 1 0.6329 -5.8432 8.0157 26 1 -0.8214 -7.7177 7.5154 27 1 1.1689 -8.0527 8.8597 28 8 2.2817 -1.0892 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 5.0342 1.8202 -1.0278 33 1 4.4948 2.5275 0.5140 34 1 5.5734 1.1116 0.5135 35 1 3.7481 -3.2730 -0.0005 36 1 7.1964 -4.5547 -1.4385 37 1 5.5243 -4.3929 -2.0276 38 1 6.5570 -2.9515 -1.8723 39 1 4.7549 -5.5966 -0.0297 40 1 6.3804 -5.6885 0.6898 41 1 6.2367 -3.3710 2.4986 42 1 5.4328 -4.1988 3.8537 43 1 6.7328 -5.0184 2.9552 44 1 3.6840 -6.5903 1.7101 45 1 5.1444 -6.8354 2.6977 46 1 3.0004 -7.7770 4.0314 47 1 1.2323 -9.6055 6.1924 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275526707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:57 Heat of formation + Delta-G solvation = -46.363960 kcal Electronic energy + Delta-G solvation = -29696.699916 eV Core-core repulsion = 25495.498301 eV Total energy + Delta-G solvation = -4201.201616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.52832 -39.85001 -38.61970 -37.06371 -35.52532 -34.69853 -33.79550 -32.95356 -31.31312 -31.18776 -29.49717 -28.03550 -27.40898 -26.95687 -24.84987 -23.21052 -22.24595 -21.88802 -20.77599 -20.41336 -19.18006 -18.27650 -17.85739 -17.14576 -16.44269 -16.21405 -15.81699 -15.35974 -15.00799 -14.71500 -14.60063 -14.38937 -14.27432 -14.00743 -13.60583 -13.50340 -13.40512 -13.24921 -13.17451 -12.89340 -12.86954 -12.59627 -12.28857 -12.15734 -12.06735 -11.86354 -11.53851 -11.39751 -11.27885 -11.09371 -10.97576 -10.96117 -10.78229 -10.36293 -10.24818 -10.16485 -9.50991 -9.25583 -8.80241 -8.49036 -8.00874 -7.90406 -6.44252 -3.84957 0.73165 2.26732 2.29884 3.02147 3.12685 3.14166 3.24997 3.32127 3.73819 3.87369 3.91267 4.21361 4.58412 4.59940 4.70182 4.98215 5.03072 5.06801 5.10586 5.14116 5.21604 5.23559 5.37921 5.44141 5.47125 5.49280 5.52088 5.55262 5.67175 5.70054 5.76239 5.83200 5.87012 5.91521 5.95447 6.02297 6.18901 6.24979 6.38358 6.55088 7.19738 7.30708 7.31194 7.53131 7.55081 8.02893 8.04299 8.59471 9.16134 9.52116 10.04044 10.73586 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.002930 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.270144 B = 9554.833289 C =11331.974366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.221 3.779 3 N -0.493 5.493 4 C 0.078 3.922 5 C -0.079 4.079 6 C -0.115 4.115 7 C 0.613 3.387 8 O -0.525 6.525 9 N -0.691 5.691 10 C 0.147 3.853 11 H 0.092 0.908 12 C -0.162 4.162 13 C 0.042 3.958 14 N -0.516 5.516 15 C 0.021 3.979 16 C 0.045 3.955 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 O -0.184 6.184 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.410 0.590 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.015 0.985 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.886 10.501 -16.203 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.016 3.984 3 N -0.224 5.224 4 C -0.046 4.046 5 C -0.136 4.136 6 C -0.170 4.170 7 C 0.399 3.601 8 O -0.404 6.404 9 N -0.341 5.341 10 C 0.042 3.958 11 H 0.110 0.890 12 C -0.221 4.221 13 C -0.087 4.087 14 N -0.240 5.240 15 C -0.127 4.127 16 C -0.086 4.086 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.755 3.245 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 O -0.070 6.070 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.245 0.755 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.034 0.966 44 H 0.106 0.894 45 H 0.066 0.934 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.890 12.287 -15.867 20.442 hybrid contribution -0.125 -2.127 0.706 2.245 sum 3.765 10.159 -15.162 18.635 Atomic orbital electron populations 1.20394 0.80785 1.05386 1.05408 1.26539 0.96694 0.78619 0.96555 1.70335 1.01616 1.29988 1.20431 1.22032 0.93448 0.91297 0.97873 1.20365 0.92323 0.97446 1.03448 1.22872 0.82500 0.95095 1.16510 1.16236 0.85315 0.81768 0.76798 1.90823 1.23718 1.74024 1.51828 1.45699 1.10816 1.04749 1.72825 1.21042 0.87879 0.90335 0.96523 0.89031 1.22162 1.01460 1.02610 0.95868 1.22506 0.99260 0.95343 0.91607 1.61565 1.34472 1.26574 1.01396 1.22565 0.92699 0.98229 0.99189 1.21877 0.98457 0.90631 0.97634 1.19725 0.84924 0.86082 0.86367 1.90499 1.65015 1.21491 1.68989 1.41875 1.45198 1.08706 1.24379 1.19738 1.25850 0.95894 1.01239 0.87906 1.25250 0.98295 0.94713 0.99681 1.69616 1.44564 0.99361 1.40825 0.85816 0.78999 0.78780 0.80858 1.19228 1.20737 1.20765 1.84471 1.16141 1.37191 1.69244 0.88165 0.87844 0.88845 0.90220 0.90580 0.88617 0.75463 0.91354 0.92221 0.91757 0.90162 0.93226 0.92149 0.88581 0.96620 0.89443 0.93397 0.77537 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.00 0.38 -0.07 16 2 C 0.22 2.69 8.32 -12.80 -0.11 2.58 16 3 N -0.49 -6.78 11.26 -7.07 -0.08 -6.86 16 4 C 0.08 1.09 7.16 -82.47 -0.59 0.50 16 5 C -0.08 -0.91 9.87 36.01 0.36 -0.55 16 6 C -0.11 -1.66 7.18 -36.84 -0.26 -1.93 16 7 C 0.61 8.88 7.75 -12.84 -0.10 8.78 16 8 O -0.52 -8.28 14.45 5.21 0.08 -8.21 16 9 N -0.69 -8.84 4.80 -55.11 -0.26 -9.11 16 10 C 0.15 1.67 2.35 -67.94 -0.16 1.51 16 11 H 0.09 1.18 6.23 -51.93 -0.32 0.86 16 12 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 13 C 0.04 0.48 4.52 -3.83 -0.02 0.46 16 14 N -0.52 -8.07 4.22 -244.37 -1.03 -9.10 16 15 C 0.02 0.34 8.96 60.06 0.54 0.88 16 16 C 0.05 0.77 5.45 -4.98 -0.03 0.74 16 17 C 0.44 10.18 7.48 -10.99 -0.08 10.10 16 18 O -0.58 -15.23 13.91 5.55 0.08 -15.15 16 19 N -0.56 -14.02 5.29 -10.97 -0.06 -14.08 16 20 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 24 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 O -0.18 -2.53 10.57 4.41 0.05 -2.48 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.10 1.18 6.47 -51.93 -0.34 0.84 16 35 H 0.41 5.16 8.40 -40.82 -0.34 4.82 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 40 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 41 H 0.06 0.94 6.58 -51.93 -0.34 0.60 16 42 H 0.10 1.94 5.82 -51.93 -0.30 1.63 16 43 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 45 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 46 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 47 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 394.88 15.07 5.95 5.95 Total: -1.00 -33.52 394.88 -6.50 -40.02 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -6.95 Total: 12.67 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 0.04 Total: 14.04 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -0.71 Total: -62.69 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: 0.20 Total: -25.85 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.52 -6.50 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275526707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.342 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds