Wall clock time and date at job start Tue Mar 31 2020 21:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00073 * 2 1 4 4 C 1.52996 * 109.46865 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47556 * 65.00034 * 4 3 2 6 6 C 1.36938 * 119.99702 * 269.99973 * 5 4 3 7 7 H 1.07997 * 119.99721 * 138.12443 * 6 5 4 8 8 C 1.38810 * 120.00316 * 318.11750 * 6 5 4 9 9 N 1.31621 * 119.99810 * 342.10010 * 8 6 5 10 10 Si 1.86794 * 120.00138 * 162.09524 * 8 6 5 11 11 H 1.48497 * 109.46992 * 60.00564 * 10 8 6 12 12 H 1.48509 * 109.47248 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47280 * 300.00328 * 10 8 6 14 14 C 1.46502 * 120.00156 * 89.99846 * 5 4 3 15 15 C 1.53042 * 109.45755 * 243.29382 * 14 5 4 16 16 C 1.53194 * 109.30860 * 178.62892 * 15 14 5 17 17 N 1.46920 * 108.77783 * 54.63722 * 16 15 14 18 18 C 1.34777 * 120.63295 * 126.37215 * 17 16 15 19 19 O 1.21502 * 119.99909 * 175.01560 * 18 17 16 20 20 C 1.48279 * 119.99714 * 355.28000 * 18 17 16 21 21 N 1.31601 * 128.71333 * 4.47814 * 20 18 17 22 22 O 1.20897 * 109.17571 * 179.88399 * 21 20 18 23 23 N 1.20838 * 115.91321 * 0.42384 * 22 21 20 24 24 C 1.30645 * 109.61413 * 359.74034 * 23 22 21 25 25 C 1.50707 * 128.63863 * 180.02562 * 24 23 22 26 26 C 1.46932 * 118.73575 * 306.63964 * 17 16 15 27 27 C 1.52760 * 109.00664 * 53.31371 * 26 17 16 28 28 H 1.08998 * 109.46702 * 299.99902 * 1 2 3 29 29 H 1.09002 * 109.46764 * 59.99701 * 1 2 3 30 30 H 1.08993 * 109.47189 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47083 * 60.00400 * 3 2 1 32 32 H 1.09003 * 109.47240 * 299.99673 * 3 2 1 33 33 H 1.08999 * 109.47566 * 304.99474 * 4 3 2 34 34 H 1.09007 * 109.47360 * 185.00081 * 4 3 2 35 35 H 0.97003 * 120.00391 * 179.97438 * 9 8 6 36 36 H 1.08996 * 109.45588 * 3.26860 * 14 5 4 37 37 H 1.09000 * 109.49953 * 58.67537 * 15 14 5 38 38 H 1.08997 * 109.49604 * 298.57830 * 15 14 5 39 39 H 1.09006 * 109.58630 * 294.84634 * 16 15 14 40 40 H 1.09002 * 109.70444 * 174.49233 * 16 15 14 41 41 H 1.08993 * 109.47403 * 269.97901 * 25 24 23 42 42 H 1.08998 * 109.46926 * 29.97728 * 25 24 23 43 43 H 1.09000 * 109.47099 * 149.97364 * 25 24 23 44 44 H 1.09001 * 109.58749 * 173.14509 * 26 17 16 45 45 H 1.09001 * 109.58684 * 293.56792 * 26 17 16 46 46 H 1.08999 * 109.56165 * 185.55516 * 27 26 17 47 47 H 1.08991 * 109.36054 * 65.49723 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0968 -0.7971 -1.3368 7 1 3.7568 -1.3158 -2.2209 8 6 4.6565 -1.5104 -0.2857 9 7 5.3810 -0.8881 0.6199 10 14 4.3814 -3.3535 -0.1565 11 1 4.9193 -4.0204 -1.3693 12 1 5.0789 -3.8750 1.0463 13 1 2.9268 -3.6301 -0.0435 14 6 4.2865 1.4005 -2.4148 15 6 3.3142 1.0758 -3.5512 16 6 3.6202 1.9759 -4.7525 17 7 5.0374 1.8234 -5.1088 18 6 5.3986 1.5050 -6.3676 19 8 6.5744 1.4706 -6.6719 20 6 4.3608 1.2025 -7.3826 21 7 3.0517 1.2708 -7.2668 22 8 2.5429 0.9476 -8.3148 23 7 3.3062 0.6380 -9.1990 24 6 4.5367 0.7436 -8.7731 25 6 5.8173 0.4660 -9.5176 26 6 6.0532 2.0188 -4.0652 27 6 5.7202 1.1237 -2.8730 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8515 0.5682 0.8409 34 1 3.9787 2.1764 0.0889 35 1 5.7719 -1.3864 1.3546 36 1 4.1888 2.4514 -2.1424 37 1 2.2918 1.2509 -3.2165 38 1 3.4289 0.0312 -3.8407 39 1 3.4188 3.0148 -4.4913 40 1 2.9975 1.6844 -5.5982 41 1 6.0998 -0.5774 -9.3784 42 1 5.6704 0.6640 -10.5794 43 1 6.6078 1.1109 -9.1338 44 1 7.0351 1.7532 -4.4568 45 1 6.0542 3.0613 -3.7470 46 1 6.4102 1.3329 -2.0556 47 1 5.8122 0.0787 -3.1689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277413629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:32 Heat of formation + Delta-G solvation = 73.330754 kcal Electronic energy + Delta-G solvation = -30961.618785 eV Core-core repulsion = 26765.607522 eV Total energy + Delta-G solvation = -4196.011263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -47.01178 -40.11466 -37.77184 -36.91153 -35.40651 -35.18525 -34.68740 -32.05550 -30.91641 -30.56216 -29.60242 -28.20520 -26.22493 -25.66964 -24.60078 -23.39254 -22.73006 -22.50384 -21.07499 -20.29648 -19.30777 -19.16209 -17.83585 -17.32867 -16.30497 -16.01240 -15.72565 -15.14840 -15.04168 -14.83566 -14.47149 -14.09414 -14.02396 -13.91928 -13.75897 -13.57629 -13.49176 -13.25284 -13.13455 -12.57771 -12.33718 -12.17703 -11.76902 -11.66313 -11.40846 -11.33012 -11.29262 -10.91256 -10.78457 -10.71699 -10.63836 -10.50284 -10.46290 -10.34293 -9.98279 -9.86962 -9.79149 -9.48186 -8.83905 -8.57620 -8.36414 -6.45562 -5.70270 -3.31914 0.63097 1.15244 2.52800 2.90253 3.21630 3.28340 3.44097 3.48686 3.54328 3.70690 4.38930 4.54679 4.56741 4.67353 4.90917 5.17824 5.21604 5.28289 5.35999 5.40307 5.48043 5.53662 5.72378 5.73645 5.75050 5.77974 5.80243 5.97003 6.02399 6.07498 6.13135 6.15848 6.23783 6.36278 6.41032 6.57239 6.64396 6.71129 6.76638 7.09052 7.19773 7.30963 7.62418 7.89500 7.91638 8.06737 8.32220 8.64181 9.26213 9.87702 10.45870 11.31087 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.003483 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.094443 B = 8037.104769 C = 8477.863424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.046 3.954 4 C 0.148 3.852 5 N -0.571 5.571 6 C -0.236 4.236 7 H 0.051 0.949 8 C 0.024 3.976 9 N -0.893 5.893 10 Si 0.893 3.107 11 H -0.285 1.285 12 H -0.293 1.293 13 H -0.281 1.281 14 C 0.176 3.824 15 C -0.137 4.137 16 C 0.079 3.921 17 N -0.580 5.580 18 C 0.600 3.400 19 O -0.524 6.524 20 C -0.030 4.030 21 N -0.315 5.315 22 O 0.332 5.668 23 N -0.358 5.358 24 C 0.058 3.942 25 C -0.075 4.075 26 C 0.113 3.887 27 C -0.132 4.132 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.023 0.977 32 H 0.027 0.973 33 H 0.099 0.901 34 H 0.039 0.961 35 H 0.253 0.747 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.655 7.663 -12.790 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C -0.033 4.033 4 C 0.021 3.979 5 N -0.290 5.290 6 C -0.366 4.366 7 H 0.069 0.931 8 C -0.176 4.176 9 N -0.535 5.535 10 Si 0.724 3.276 11 H -0.212 1.212 12 H -0.219 1.219 13 H -0.207 1.207 14 C 0.068 3.932 15 C -0.177 4.177 16 C -0.044 4.044 17 N -0.312 5.312 18 C 0.384 3.616 19 O -0.400 6.400 20 C -0.196 4.196 21 N -0.039 5.039 22 O 0.111 5.889 23 N -0.084 5.084 24 C -0.107 4.107 25 C -0.133 4.133 26 C -0.008 4.008 27 C -0.172 4.172 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.116 0.884 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.121 0.879 44 H 0.107 0.893 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.979 7.406 -12.863 15.367 hybrid contribution 0.143 -0.779 0.425 0.899 sum -3.836 6.627 -12.438 14.606 Atomic orbital electron populations 1.22626 0.84308 1.01445 0.98355 1.88227 1.16475 1.27638 1.94803 1.23463 0.99015 0.84117 0.96735 1.20987 0.87306 0.96482 0.93121 1.43657 1.75380 1.02640 1.07273 1.18605 1.33243 0.81594 1.03187 0.93112 1.25129 0.95899 0.97411 0.99196 1.69930 1.33124 1.35282 1.15188 0.86538 0.78106 0.86180 0.76826 1.21165 1.21892 1.20750 1.20357 0.91123 0.93488 0.88194 1.22362 1.00779 0.99771 0.94823 1.22630 0.80199 1.00645 1.00966 1.48049 1.09294 1.65997 1.07831 1.16575 0.85779 0.78218 0.81047 1.90780 1.16552 1.53441 1.79194 1.26197 0.90933 1.05890 0.96553 1.75238 1.09470 1.13411 1.05797 1.85078 1.33972 1.57824 1.12048 1.75039 1.01788 1.17290 1.14295 1.26204 0.95388 0.98195 0.90934 1.20341 0.89435 1.04418 0.99078 1.21849 0.91268 1.00151 0.87581 1.22207 0.99558 1.00084 0.95332 0.95590 0.95322 0.90786 0.95894 0.95506 0.88376 0.94256 0.93753 0.93510 0.91343 0.91427 0.91408 0.87127 0.88843 0.89560 0.87891 0.89340 0.91478 0.90332 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.35 -7.58 10.18 -35.23 -0.36 -7.93 16 3 C 0.05 0.89 6.28 37.16 0.23 1.12 16 4 C 0.15 3.24 5.69 -4.04 -0.02 3.22 16 5 N -0.57 -12.97 2.31 -165.62 -0.38 -13.36 16 6 C -0.24 -6.11 7.60 -15.06 -0.11 -6.23 16 7 H 0.05 1.37 7.05 -52.49 -0.37 1.00 16 8 C 0.02 0.63 5.00 -17.43 -0.09 0.55 16 9 N -0.89 -24.86 11.57 55.49 0.64 -24.22 16 10 Si 0.89 21.95 29.59 -169.99 -5.03 16.92 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.18 3.31 2.60 -67.89 -0.18 3.14 16 15 C -0.14 -2.35 5.35 -26.61 -0.14 -2.49 16 16 C 0.08 1.12 6.35 -3.71 -0.02 1.10 16 17 N -0.58 -8.76 2.98 -173.98 -0.52 -9.28 16 18 C 0.60 9.19 7.72 -12.13 -0.09 9.09 16 19 O -0.52 -8.75 15.36 5.36 0.08 -8.67 16 20 C -0.03 -0.42 7.27 -80.07 -0.58 -1.00 16 21 N -0.32 -4.13 8.86 33.49 0.30 -3.84 16 22 O 0.33 4.05 11.65 27.27 0.32 4.37 16 23 N -0.36 -4.32 12.22 33.75 0.41 -3.91 16 24 C 0.06 0.69 7.79 -79.33 -0.62 0.07 16 25 C -0.08 -0.66 10.25 36.01 0.37 -0.29 16 26 C 0.11 1.72 6.39 -3.93 -0.03 1.69 16 27 C -0.13 -2.44 5.24 -26.83 -0.14 -2.58 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.10 2.52 5.71 -51.93 -0.30 2.23 16 34 H 0.04 0.79 7.89 -51.93 -0.41 0.38 16 35 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.05 0.82 7.77 -51.93 -0.40 0.42 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.33 7.21 -51.93 -0.37 0.95 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.11 1.54 3.85 -67.08 -0.26 1.28 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.95 7.25 -51.93 -0.38 0.57 16 44 H 0.09 1.37 7.04 -51.93 -0.37 1.00 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 47 H 0.07 1.55 7.64 -51.93 -0.40 1.15 16 LS Contribution 379.85 15.07 5.72 5.72 Total: -1.00 -29.49 379.85 -6.16 -35.65 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -7.04 Total: -0.47 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -0.31 Total: 9.01 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.45 Total: -54.60 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.04 Total: -12.23 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.49 -6.16 -35.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277413629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.985 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds