Wall clock time and date at job start Tue Mar 31 2020 20:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32093 * 119.84887 * 2 1 4 4 C 1.32611 * 120.00752 * 179.97438 * 3 2 1 5 5 O 1.35432 * 120.14628 * 180.02562 * 4 3 2 6 6 C 1.40223 * 119.70629 * 0.02562 * 4 3 2 7 7 C 1.47833 * 120.14624 * 180.02562 * 6 4 3 8 8 O 1.21553 * 119.99938 * 359.97438 * 7 6 4 9 9 N 1.34778 * 120.00121 * 179.97438 * 7 6 4 10 10 C 1.46494 * 120.00397 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47435 * 180.02562 * 10 9 7 12 12 O 1.42906 * 109.46882 * 64.99853 * 11 10 9 13 13 C 1.42895 * 113.99551 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46891 * 180.02562 * 13 12 11 15 15 C 1.53009 * 109.47000 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.46781 * 180.02562 * 15 14 13 17 17 C 1.36938 * 119.99956 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99710 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99982 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00155 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99757 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47281 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46873 * 119.99796 * 21 19 17 24 24 H 1.48492 * 109.47292 * 239.99712 * 21 19 17 25 25 N 1.32995 * 119.70563 * 359.72394 * 6 4 3 26 26 C 1.31764 * 119.98378 * 0.55048 * 25 6 4 27 27 C 1.50706 * 119.85059 * 179.72868 * 26 25 6 28 28 H 1.08997 * 109.47163 * 270.01867 * 1 2 3 29 29 H 1.09000 * 109.47084 * 30.02781 * 1 2 3 30 30 H 1.09009 * 109.46894 * 150.02379 * 1 2 3 31 31 H 0.96694 * 114.00022 * 90.00297 * 5 4 3 32 32 H 0.97000 * 119.99395 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47407 * 300.00452 * 10 9 7 34 34 H 1.09004 * 109.46840 * 59.99798 * 10 9 7 35 35 H 1.08999 * 109.47417 * 184.99831 * 11 10 9 36 36 H 1.09001 * 109.46766 * 305.00187 * 11 10 9 37 37 H 1.09003 * 109.47997 * 300.00346 * 13 12 11 38 38 H 1.09001 * 109.47358 * 60.00528 * 13 12 11 39 39 H 1.08999 * 109.47154 * 300.00083 * 14 13 12 40 40 H 1.08995 * 109.47327 * 60.00042 * 14 13 12 41 41 H 1.08999 * 109.47048 * 299.99919 * 15 14 13 42 42 H 1.08996 * 109.46808 * 60.00080 * 15 14 13 43 43 H 0.97008 * 120.00282 * 359.97438 * 16 15 14 44 44 H 0.97000 * 119.99932 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.46953 * 269.72177 * 27 26 25 46 46 H 1.09000 * 109.47318 * 29.71775 * 27 26 25 47 47 H 1.09000 * 109.47161 * 149.72405 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1644 1.1457 0.0000 4 6 3.4905 1.1494 0.0005 5 8 4.1674 2.3224 0.0010 6 6 4.1888 -0.0667 0.0005 7 6 5.6671 -0.0739 0.0017 8 8 6.2800 0.9758 0.0021 9 7 6.3353 -1.2444 0.0022 10 6 7.8002 -1.2517 0.0027 11 6 8.3031 -2.6966 0.0026 12 8 7.9223 -3.3334 -1.2188 13 6 8.3461 -4.6942 -1.3214 14 6 7.8867 -5.2717 -2.6617 15 6 8.3399 -6.7290 -2.7714 16 7 7.9006 -7.2817 -4.0550 17 6 8.1931 -8.5800 -4.3775 18 1 8.7480 -9.1963 -3.6857 19 6 7.7772 -9.1035 -5.5940 20 7 7.1014 -8.3522 -6.4373 21 14 8.1769 -10.8744 -6.0341 22 1 8.9394 -11.5004 -4.9243 23 1 6.9154 -11.6267 -6.2533 24 1 8.9928 -10.9041 -7.2745 25 7 3.5152 -1.2134 0.0056 26 6 2.1976 -1.2032 -0.0004 27 6 1.4374 -2.5045 -0.0009 28 1 -0.3633 0.0003 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8903 -0.5135 31 1 4.3637 2.6628 0.8845 32 1 5.8461 -2.0820 0.0022 33 1 8.1665 -0.7398 -0.8872 34 1 8.1657 -0.7394 0.8928 35 1 9.3894 -2.7033 0.0926 36 1 7.8655 -3.2337 0.8441 37 1 9.4333 -4.7420 -1.2591 38 1 7.9097 -5.2730 -0.5073 39 1 6.7996 -5.2239 -2.7245 40 1 8.3234 -4.6928 -3.4756 41 1 9.4270 -6.7771 -2.7084 42 1 7.9029 -7.3075 -1.9575 43 1 7.4018 -6.7282 -4.6762 44 1 6.8105 -8.7182 -7.2872 45 1 1.2545 -2.8180 -1.0287 46 1 2.0224 -3.2672 0.5130 47 1 0.4855 -2.3693 0.5126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277603590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:57 Heat of formation + Delta-G solvation = -70.273262 kcal Electronic energy + Delta-G solvation = -28104.228879 eV Core-core repulsion = 23901.990478 eV Total energy + Delta-G solvation = -4202.238401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.96479 -39.70824 -38.27448 -37.93771 -35.45581 -35.18071 -34.66430 -33.72447 -32.33361 -30.45057 -29.57823 -28.87603 -27.81713 -25.10127 -24.30247 -23.71870 -22.56646 -22.49862 -21.07664 -20.83618 -19.23777 -18.74114 -18.00639 -17.03114 -16.88320 -16.57689 -16.55152 -15.66352 -15.33014 -15.13033 -14.94537 -14.60950 -14.32206 -14.19814 -13.80442 -13.61009 -13.53039 -13.48459 -13.30011 -13.03031 -13.01479 -12.69753 -12.47146 -12.21830 -12.15184 -12.10977 -11.69793 -11.38315 -11.31456 -10.92537 -10.75792 -10.69675 -10.65327 -10.55887 -10.02711 -9.71846 -9.64871 -9.54348 -9.43608 -9.21085 -8.88069 -6.92657 -5.76250 -3.05502 -0.15577 0.46369 2.30901 2.60956 2.93770 3.23810 3.40737 3.43380 3.47723 3.51060 3.54404 3.71243 4.07689 4.34399 4.54258 4.59769 4.62212 4.69245 4.89216 4.96895 5.04941 5.11399 5.12488 5.14152 5.25855 5.26838 5.38156 5.38850 5.45546 5.56866 5.58944 5.61482 5.78971 5.95974 6.07950 6.11722 6.26289 6.36249 6.55975 6.81976 6.86336 6.99204 7.10421 7.16563 7.28298 7.70020 7.86108 8.42470 9.53422 10.11476 10.46141 11.46768 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.001933 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.027232 B =14479.201060 C =16230.114804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.132 3.868 3 N -0.463 5.463 4 C 0.322 3.678 5 O -0.451 6.451 6 C 0.011 3.989 7 C 0.575 3.425 8 O -0.519 6.519 9 N -0.702 5.702 10 C 0.122 3.878 11 C 0.048 3.952 12 O -0.386 6.386 13 C 0.068 3.932 14 C -0.125 4.125 15 C 0.157 3.843 16 N -0.733 5.733 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.016 4.016 20 N -0.933 5.933 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 N -0.392 5.392 26 C 0.070 3.930 27 C -0.104 4.104 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.407 0.593 32 H 0.415 0.585 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.042 19.181 21.131 30.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.011 4.011 3 N -0.188 5.188 4 C 0.140 3.860 5 O -0.257 6.257 6 C -0.132 4.132 7 C 0.358 3.642 8 O -0.394 6.394 9 N -0.355 5.355 10 C -0.001 4.001 11 C -0.029 4.029 12 O -0.306 6.306 13 C -0.008 4.008 14 C -0.163 4.163 15 C 0.029 3.971 16 N -0.378 5.378 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 N -0.111 5.111 26 C -0.074 4.074 27 C -0.162 4.162 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.267 0.733 32 H 0.251 0.749 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.104 0.896 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.481 19.896 20.412 30.370 hybrid contribution 0.090 -1.147 0.065 1.153 sum -10.391 18.748 20.478 29.645 Atomic orbital electron populations 1.20902 0.86901 1.04835 1.04079 1.22316 0.98579 0.87545 0.92679 1.67972 1.08213 1.30278 1.12316 1.19949 0.86853 0.86449 0.92743 1.84766 1.72691 1.34424 1.33823 1.22366 0.96022 0.89707 1.05094 1.17427 0.84802 0.84386 0.77567 1.90834 1.67839 1.31243 1.49456 1.45746 1.07397 1.08932 1.73393 1.21484 0.79367 0.95894 1.03382 1.22708 0.99663 0.92459 0.88068 1.87943 1.78985 1.26234 1.37393 1.22507 0.98376 0.81188 0.98759 1.21671 1.02168 0.97040 0.95383 1.20510 0.96552 0.90084 0.89941 1.42353 1.67103 1.11980 1.16330 1.19282 1.29093 0.88295 1.00446 0.91077 1.24774 1.01013 0.98350 0.97012 1.69680 1.43005 1.35557 1.09909 0.86092 0.77457 0.84519 0.77975 1.20545 1.21834 1.21834 1.68193 1.08633 1.27785 1.06524 1.22207 0.89885 0.97192 0.98111 1.20804 0.99227 0.91841 1.04282 0.89170 0.89557 0.89152 0.73305 0.74859 0.90084 0.89723 0.91395 0.92597 0.93224 0.93258 0.91179 0.91171 0.96331 0.96325 0.78179 0.93520 0.89229 0.89554 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 9.36 36.00 0.34 -0.12 16 2 C 0.13 1.08 6.79 -82.30 -0.56 0.52 16 3 N -0.46 -4.89 10.44 -9.01 -0.09 -4.99 16 4 C 0.32 3.67 7.78 -16.47 -0.13 3.54 16 5 O -0.45 -4.89 11.64 -39.84 -0.46 -5.35 16 6 C 0.01 0.13 6.77 -82.69 -0.56 -0.43 16 7 C 0.57 7.13 7.80 -12.33 -0.10 7.04 16 8 O -0.52 -7.45 15.17 -16.54 -0.25 -7.70 16 9 N -0.70 -7.61 5.49 -61.26 -0.34 -7.94 16 10 C 0.12 1.17 6.06 -4.05 -0.02 1.14 16 11 C 0.05 0.44 6.07 37.16 0.23 0.67 16 12 O -0.39 -5.00 10.29 -35.23 -0.36 -5.37 16 13 C 0.07 0.90 5.94 37.16 0.22 1.12 16 14 C -0.12 -2.10 5.70 -26.72 -0.15 -2.25 16 15 C 0.16 3.19 6.26 -4.04 -0.03 3.17 16 16 N -0.73 -19.14 5.60 -59.91 -0.34 -19.48 16 17 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 21 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 N -0.39 -4.16 9.62 -5.79 -0.06 -4.21 16 26 C 0.07 0.59 6.78 -82.44 -0.56 0.03 16 27 C -0.10 -0.53 9.36 36.01 0.34 -0.19 16 28 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.21 6.68 -51.92 -0.35 -0.14 16 31 H 0.41 2.50 9.06 45.56 0.41 2.91 16 32 H 0.41 4.34 7.82 -40.82 -0.32 4.02 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.38 10.57 7.67 -40.82 -0.31 10.26 16 44 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.21 6.68 -51.93 -0.35 -0.14 16 LS Contribution 400.40 15.07 6.03 6.03 Total: -1.00 -36.78 400.40 -7.77 -44.55 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.38 Total: 8.21 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -1.23 Total: 6.67 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -0.10 Total: -64.60 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -1.08 Total: -18.41 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.78 -7.77 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277603590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.719 kcal (2) G-P(sol) polarization free energy of solvation -36.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds