Wall clock time and date at job start Tue Mar 31 2020 21:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30250 * 125.62048 * 2 1 4 4 C 1.34484 * 108.70027 * 179.97438 * 3 2 1 5 5 C 1.34330 * 107.66836 * 0.27078 * 4 3 2 6 6 C 1.50694 * 126.44286 * 179.73187 * 5 4 3 7 7 C 1.50703 * 109.47219 * 89.99855 * 6 5 4 8 8 O 1.21282 * 119.99970 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00193 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99927 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46883 * 324.99249 * 10 9 7 12 12 C 1.52995 * 109.47095 * 84.99719 * 10 9 7 13 13 C 1.52999 * 109.46611 * 205.00047 * 10 9 7 14 14 H 1.08993 * 109.47527 * 64.99747 * 13 10 9 15 15 C 1.52999 * 109.47023 * 304.99618 * 13 10 9 16 16 N 1.46908 * 109.46538 * 185.00088 * 13 10 9 17 17 C 1.46901 * 110.99514 * 204.99575 * 16 13 10 18 18 C 1.50697 * 109.47160 * 179.97438 * 17 16 13 19 19 O 1.21297 * 120.00110 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00588 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00205 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00305 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99755 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00412 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99753 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47080 * 89.99896 * 25 23 21 27 27 H 1.48506 * 109.46975 * 209.99409 * 25 23 21 28 28 H 1.48500 * 109.47390 * 329.99826 * 25 23 21 29 29 O 1.33972 * 125.61724 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47097 * 90.02027 * 1 2 3 31 31 H 1.09007 * 109.47129 * 210.02172 * 1 2 3 32 32 H 1.08997 * 109.46764 * 330.01876 * 1 2 3 33 33 H 1.08002 * 126.16218 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47520 * 209.99424 * 6 5 4 35 35 H 1.09003 * 109.47512 * 329.99686 * 6 5 4 36 36 H 0.96999 * 119.99679 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.47210 * 60.00257 * 12 10 9 38 38 H 1.09006 * 109.47093 * 179.97438 * 12 10 9 39 39 H 1.09003 * 109.47147 * 299.99350 * 12 10 9 40 40 H 1.09005 * 109.47405 * 300.00269 * 15 13 10 41 41 H 1.08992 * 109.47602 * 60.00203 * 15 13 10 42 42 H 1.09004 * 109.47170 * 180.02562 * 15 13 10 43 43 H 1.00893 * 110.99791 * 328.94879 * 16 13 10 44 44 H 1.09004 * 109.47420 * 299.99922 * 17 16 13 45 45 H 1.09003 * 109.47267 * 59.99789 * 17 16 13 46 46 H 0.97002 * 119.99337 * 359.97438 * 20 18 17 47 47 H 0.96994 * 120.00815 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5698 -0.6758 -0.0051 6 6 4.7936 -1.5550 -0.0124 7 6 5.2058 -1.8540 1.4060 8 8 4.5688 -1.3977 2.3316 9 7 6.2830 -2.6278 1.6459 10 6 6.6840 -2.9180 3.0247 11 1 6.4834 -2.0493 3.6519 12 6 5.8894 -4.1173 3.5452 13 6 8.1790 -3.2409 3.0638 14 1 8.7492 -2.3572 2.7775 15 6 8.4803 -4.3803 2.0881 16 7 8.5566 -3.6480 4.4238 17 6 9.9829 -3.3983 4.6711 18 6 10.3323 -3.8268 6.0730 19 8 9.4772 -4.2947 6.7950 20 7 11.5947 -3.6903 6.5247 21 6 11.9125 -4.0806 7.7999 22 1 11.1512 -4.4972 8.4427 23 6 13.2140 -3.9392 8.2657 24 7 14.1403 -3.4319 7.4838 25 14 13.6469 -4.4704 10.0035 26 1 14.0687 -5.8942 9.9952 27 1 14.7573 -3.6283 10.5164 28 1 12.4590 -4.3111 10.8802 29 8 2.2872 -1.0891 0.0005 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3634 -0.8898 0.5142 32 1 -0.3633 0.8901 0.5135 33 1 4.4157 1.3161 0.0003 34 1 4.5680 -2.4877 -0.5294 35 1 5.6065 -1.0421 -0.5265 36 1 6.7927 -2.9924 0.9055 37 1 6.0900 -4.9859 2.9181 38 1 6.1880 -4.3335 4.5710 39 1 4.8243 -3.8872 3.5175 40 1 7.9101 -5.2641 2.3744 41 1 8.2001 -4.0783 1.0791 42 1 9.5454 -4.6106 2.1163 43 1 7.9835 -3.1839 5.1124 44 1 10.5803 -3.9662 3.9578 45 1 10.1913 -2.3348 4.5541 46 1 12.2786 -3.3164 5.9472 47 1 15.0489 -3.3336 7.8087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282142641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:50 Heat of formation + Delta-G solvation = -50.034990 kcal Electronic energy + Delta-G solvation = -28326.236095 eV Core-core repulsion = 24124.875291 eV Total energy + Delta-G solvation = -4201.360804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.63040 -40.25056 -38.50551 -37.40140 -35.03879 -34.53574 -33.82689 -33.55922 -31.57105 -31.18966 -30.34271 -29.15513 -26.63875 -26.41416 -24.63496 -23.63990 -22.69431 -21.62203 -20.76321 -19.87049 -19.34044 -18.03675 -17.82852 -17.33357 -16.76594 -16.51719 -15.90696 -15.76105 -15.46478 -15.10480 -14.81721 -14.46012 -14.34311 -14.12162 -13.95385 -13.71220 -13.54812 -13.40192 -13.19413 -13.02165 -12.86512 -12.68364 -12.36070 -12.24916 -12.08352 -11.84213 -11.62181 -11.54385 -11.46111 -11.11592 -10.95659 -10.84542 -10.75019 -10.40229 -10.26939 -10.22745 -9.52226 -9.36581 -8.99280 -8.49235 -8.14963 -7.97701 -6.43086 -3.83896 1.07831 2.20386 2.28886 2.38670 2.90141 3.17230 3.26031 3.32015 3.71523 3.88870 4.07200 4.18214 4.29871 4.39549 4.52465 4.59226 4.65241 4.80878 4.81895 4.94480 5.06775 5.09611 5.11731 5.17868 5.23656 5.36765 5.50846 5.52196 5.53984 5.65467 5.69459 5.74494 5.88787 5.89969 5.92882 6.02356 6.10979 6.24754 6.30394 6.38915 7.09067 7.18442 7.42244 7.54069 7.56076 7.88183 8.04773 8.59585 9.16564 9.52592 10.03917 10.74600 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028742 B = 0.001617 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.940743 B =17316.232349 C =17461.197477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.191 3.809 3 N -0.485 5.485 4 C -0.022 4.022 5 C -0.031 4.031 6 C -0.056 4.056 7 C 0.512 3.488 8 O -0.527 6.527 9 N -0.721 5.721 10 C 0.142 3.858 11 H 0.087 0.913 12 C -0.157 4.157 13 C 0.076 3.924 14 H 0.048 0.952 15 C -0.144 4.144 16 N -0.657 5.657 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 O -0.197 6.197 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.183 0.817 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.401 0.599 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.352 0.648 44 H 0.087 0.913 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.644 4.404 -22.079 29.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.015 4.015 3 N -0.214 5.214 4 C -0.161 4.161 5 C -0.084 4.084 6 C -0.096 4.096 7 C 0.297 3.703 8 O -0.402 6.402 9 N -0.375 5.375 10 C 0.037 3.963 11 H 0.105 0.895 12 C -0.216 4.216 13 C -0.034 4.034 14 H 0.066 0.934 15 C -0.202 4.202 16 N -0.291 5.291 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 O -0.084 6.084 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.200 0.800 34 H 0.133 0.867 35 H 0.146 0.854 36 H 0.237 0.763 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.172 0.828 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.637 4.370 -21.015 29.092 hybrid contribution 1.545 0.121 0.201 1.562 sum -18.093 4.491 -20.814 27.942 Atomic orbital electron populations 1.20269 0.81277 1.05300 1.04597 1.26277 0.96450 0.78582 1.00199 1.70440 1.02044 1.30299 1.18651 1.22992 0.95189 0.92732 1.05162 1.22401 0.83185 0.94751 1.08072 1.20051 0.92427 1.00858 0.96234 1.20335 0.80677 0.78507 0.90757 1.90778 1.52767 1.51043 1.45612 1.46113 1.30080 1.51963 1.09303 1.21107 0.93670 0.99205 0.82299 0.89483 1.22123 0.99342 0.97080 1.03018 1.21720 0.93319 0.96935 0.91458 0.93428 1.21887 1.02766 0.99042 0.96510 1.60196 1.03776 1.63222 1.01860 1.21734 0.89852 0.99081 0.97513 1.19778 0.83792 0.85409 0.88448 1.90531 1.48304 1.49518 1.58293 1.41855 1.08181 1.55589 1.14359 1.19710 0.95137 1.38432 0.89663 0.87895 1.25258 0.95389 0.97237 1.00010 1.69604 1.02866 1.44972 1.36867 0.85855 0.78213 0.78400 0.81807 1.20385 1.20941 1.19420 1.84348 1.16448 1.37814 1.69799 0.88927 0.89276 0.88032 0.80037 0.86726 0.85408 0.76300 0.92088 0.89908 0.92921 0.91141 0.93237 0.91986 0.82793 0.89519 0.93812 0.77485 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.30 10.51 36.01 0.38 0.08 16 2 C 0.19 1.93 8.34 -12.95 -0.11 1.82 16 3 N -0.48 -5.74 11.29 -11.10 -0.13 -5.86 16 4 C -0.02 -0.23 11.80 -17.77 -0.21 -0.44 16 5 C -0.03 -0.30 5.88 -35.69 -0.21 -0.51 16 6 C -0.06 -0.35 6.25 -29.04 -0.18 -0.53 16 7 C 0.51 5.02 7.79 -10.98 -0.09 4.93 16 8 O -0.53 -7.81 15.70 5.56 0.09 -7.72 16 9 N -0.72 -5.82 4.99 -53.80 -0.27 -6.08 16 10 C 0.14 1.52 2.30 -67.93 -0.16 1.36 16 11 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 12 C -0.16 -1.81 9.02 37.16 0.33 -1.48 16 13 C 0.08 0.84 2.66 -67.71 -0.18 0.66 16 14 H 0.05 0.51 7.80 -51.93 -0.40 0.10 16 15 C -0.14 -1.34 8.93 37.16 0.33 -1.01 16 16 N -0.66 -9.86 5.14 -107.99 -0.55 -10.41 16 17 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 18 C 0.44 10.21 7.82 -10.99 -0.09 10.12 16 19 O -0.58 -15.61 15.78 5.54 0.09 -15.52 16 20 N -0.56 -14.12 5.29 -10.96 -0.06 -14.17 16 21 C -0.30 -8.33 9.68 -14.94 -0.14 -8.48 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 25 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 O -0.20 -2.16 10.78 5.35 0.06 -2.10 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.18 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.40 2.03 6.58 -40.82 -0.27 1.76 16 37 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 38 H 0.08 1.09 7.17 -51.93 -0.37 0.71 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.72 6.57 -51.93 -0.34 0.38 16 41 H 0.05 0.30 6.29 -51.93 -0.33 -0.02 16 42 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 43 H 0.35 5.65 7.61 -39.30 -0.30 5.35 16 44 H 0.09 1.33 7.44 -51.93 -0.39 0.95 16 45 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 46 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 394.71 15.07 5.95 5.95 Total: -1.00 -36.72 394.71 -6.30 -43.02 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -6.73 Total: 12.71 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -0.44 Total: 7.87 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.28 Total: -60.17 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: 0.23 Total: -25.35 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.72 -6.30 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282142641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.016 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds