Wall clock time and date at job start Tue Mar 31 2020 21:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29941 * 126.28785 * 2 1 4 4 O 1.21304 * 110.25145 * 179.97438 * 3 2 1 5 5 C 1.33634 * 109.81122 * 0.02562 * 4 3 2 6 6 C 1.50705 * 126.55240 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.46865 * 270.02340 * 6 5 4 8 8 C 1.50705 * 109.46865 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00017 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99883 * 180.02562 * 8 7 6 11 11 C 1.47146 * 120.98234 * 359.97438 * 10 8 7 12 12 C 1.53300 * 108.38560 * 230.56183 * 11 10 8 13 13 O 1.42967 * 109.22250 * 307.69958 * 12 11 10 14 14 C 1.42958 * 114.16653 * 62.57881 * 13 12 11 15 15 H 1.09002 * 109.51609 * 57.39307 * 14 13 12 16 16 C 1.53003 * 109.51333 * 177.49958 * 14 13 12 17 17 H 1.09000 * 109.46953 * 175.00365 * 16 14 13 18 18 C 1.52996 * 109.47332 * 54.99852 * 16 14 13 19 19 N 1.46505 * 109.46807 * 294.99907 * 16 14 13 20 20 C 1.36931 * 119.99788 * 205.00000 * 19 16 14 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 16 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 16 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 C 1.47150 * 120.98140 * 180.02562 * 10 8 7 29 29 N 1.31133 * 106.89843 * 0.22111 * 5 4 3 30 30 H 1.09001 * 109.46398 * 90.02904 * 1 2 3 31 31 H 1.08999 * 109.47138 * 210.02451 * 1 2 3 32 32 H 1.08994 * 109.47006 * 330.02834 * 1 2 3 33 33 H 1.08994 * 109.47001 * 150.02159 * 6 5 4 34 34 H 1.09002 * 109.46993 * 30.02483 * 6 5 4 35 35 H 1.08994 * 109.47459 * 60.00099 * 7 6 5 36 36 H 1.08993 * 109.47386 * 299.99623 * 7 6 5 37 37 H 1.08995 * 109.68538 * 110.83917 * 11 10 8 38 38 H 1.09000 * 109.71377 * 350.30170 * 11 10 8 39 39 H 1.08997 * 109.51507 * 187.77686 * 12 11 10 40 40 H 1.09003 * 109.55437 * 67.64767 * 12 11 10 41 41 H 1.09002 * 109.46807 * 300.00318 * 18 16 14 42 42 H 1.08998 * 109.47019 * 59.99816 * 18 16 14 43 43 H 1.08998 * 109.47099 * 180.02562 * 18 16 14 44 44 H 0.97000 * 119.99792 * 24.99795 * 19 16 14 45 45 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.68431 * 9.71448 * 28 10 8 47 47 H 1.08996 * 109.67824 * 249.16319 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5299 -0.6211 0.0003 6 6 4.7970 -1.4370 0.0003 7 6 5.2261 -1.7124 -1.4422 8 6 6.4935 -2.5278 -1.4423 9 8 7.0036 -2.8558 -0.3920 10 7 7.0608 -2.8915 -2.6095 11 6 6.4607 -2.5048 -3.8962 12 6 6.3359 -3.7596 -4.7681 13 8 7.6039 -4.4171 -4.8309 14 6 8.0839 -4.8847 -3.5681 15 1 7.3524 -5.5631 -3.1290 16 6 9.4100 -5.6217 -3.7664 17 1 9.8195 -5.9004 -2.7955 18 6 10.3979 -4.7072 -4.4933 19 7 9.1831 -6.8286 -4.5653 20 6 10.0410 -7.8906 -4.4601 21 1 10.8847 -7.8387 -3.7879 22 6 9.8228 -9.0364 -5.2128 23 7 8.7943 -9.0998 -6.0316 24 14 10.9888 -10.4881 -5.0635 25 1 12.0569 -10.1663 -4.0831 26 1 10.2361 -11.6821 -4.6022 27 1 11.6007 -10.7696 -6.3869 28 6 8.2978 -3.6879 -2.6348 29 7 2.3030 -1.0841 -0.0052 30 1 -0.3632 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 4.6205 -2.3822 0.5136 34 1 5.5842 -0.8857 0.5146 35 1 5.4026 -0.7673 -1.9556 36 1 4.4390 -2.2637 -1.9565 37 1 7.0982 -1.7741 -4.3938 38 1 5.4731 -2.0757 -3.7272 39 1 6.0231 -3.4753 -5.7727 40 1 5.5975 -4.4336 -4.3339 41 1 9.9883 -4.4286 -5.4642 42 1 10.5667 -3.8092 -3.8990 43 1 11.3425 -5.2324 -4.6350 44 1 8.4251 -6.8753 -5.1688 45 1 8.6420 -9.9003 -6.5579 46 1 8.5268 -4.0426 -1.6299 47 1 9.1206 -3.0764 -3.0051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282915726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:18 Heat of formation + Delta-G solvation = 3.677423 kcal Electronic energy + Delta-G solvation = -29245.330770 eV Core-core repulsion = 25046.299112 eV Total energy + Delta-G solvation = -4199.031659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.98411 -40.55738 -38.62869 -36.52669 -35.58154 -35.10414 -34.61866 -32.60530 -31.95607 -30.34036 -29.57704 -28.56097 -27.65142 -25.92144 -24.59466 -23.82441 -23.50224 -22.33146 -21.54554 -19.71922 -19.33496 -18.49159 -17.98120 -17.46509 -17.14117 -16.46417 -16.19919 -15.88567 -15.34038 -15.07895 -14.83044 -14.52102 -14.31068 -14.16294 -14.04479 -13.87171 -13.34851 -13.23061 -13.14188 -13.07686 -12.80009 -12.65046 -12.53298 -12.20298 -12.01072 -11.73743 -11.69773 -11.41999 -11.35008 -11.15671 -10.86898 -10.74573 -10.58558 -10.36161 -10.27587 -10.09333 -9.87771 -9.84962 -9.66160 -8.90598 -8.57829 -6.93859 -5.74103 -3.02794 0.71178 1.79521 2.30410 2.35808 2.73340 3.23060 3.44606 3.50353 3.52500 3.62979 3.92284 4.09646 4.30451 4.48157 4.56488 4.59398 4.69569 4.79440 4.92331 4.93224 4.96038 5.02796 5.10631 5.14618 5.26431 5.30149 5.39286 5.41443 5.49080 5.58789 5.61180 5.63221 5.67304 5.77026 5.95056 5.96756 6.16106 6.29301 6.44717 6.63625 6.80906 7.11884 7.16074 7.43712 7.72095 7.76403 7.88233 8.44063 9.56125 10.13521 10.50002 11.48369 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022793 B = 0.001972 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.165290 B =14198.927793 C =14425.910022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.168 3.832 3 N -0.387 5.387 4 O 0.077 5.923 5 C 0.187 3.813 6 C -0.013 4.013 7 C -0.138 4.138 8 C 0.520 3.480 9 O -0.538 6.538 10 N -0.611 5.611 11 C 0.070 3.930 12 C 0.045 3.955 13 O -0.357 6.357 14 C 0.075 3.925 15 H 0.064 0.936 16 C 0.185 3.815 17 H 0.060 0.940 18 C -0.162 4.162 19 N -0.719 5.719 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.930 5.930 24 Si 0.906 3.094 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.082 3.918 29 N -0.479 5.479 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.034 0.966 43 H 0.052 0.948 44 H 0.389 0.611 45 H 0.254 0.746 46 H 0.101 0.899 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.498 21.482 9.235 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.096 5.096 4 O 0.019 5.981 5 C -0.033 4.033 6 C -0.052 4.052 7 C -0.179 4.179 8 C 0.308 3.692 9 O -0.415 6.415 10 N -0.345 5.345 11 C -0.053 4.053 12 C -0.033 4.033 13 O -0.275 6.275 14 C 0.016 3.984 15 H 0.082 0.918 16 C 0.074 3.926 17 H 0.077 0.923 18 C -0.222 4.222 19 N -0.361 5.361 20 C -0.370 4.370 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.040 4.040 29 N -0.214 5.214 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.223 0.777 45 H 0.064 0.936 46 H 0.119 0.881 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.635 21.656 9.673 27.358 hybrid contribution 0.254 -0.777 -0.143 0.830 sum -13.382 20.879 9.529 26.567 Atomic orbital electron populations 1.20157 0.82849 1.04745 1.04426 1.25958 1.00696 0.83476 1.00369 1.74657 0.89397 1.23929 1.21635 1.85304 1.22366 1.24815 1.65585 1.28818 0.96971 0.82145 0.95374 1.19981 0.87883 0.99260 0.98066 1.21652 0.96998 1.01999 0.97275 1.20268 0.85416 0.80113 0.83411 1.90735 1.64295 1.55846 1.30598 1.48161 1.26830 1.53773 1.05689 1.22549 0.99368 0.98849 0.84521 1.22905 0.87567 0.92384 1.00454 1.88116 1.34385 1.75327 1.29686 1.22984 0.98600 0.93079 0.83727 0.91806 1.20201 0.89634 0.87367 0.95419 0.92260 1.22417 1.00607 0.98129 1.01093 1.42358 1.32756 1.11727 1.49219 1.19296 1.05233 0.92662 1.19768 0.91085 1.24745 0.98383 0.98325 0.99538 1.69688 1.29862 1.28555 1.29780 0.86133 0.80084 0.82896 0.77175 1.20544 1.21937 1.21926 1.22523 0.85578 0.93369 1.02562 1.71953 0.99727 1.29363 1.20317 0.89209 0.88913 0.89490 0.86090 0.86894 0.87960 0.87753 0.90135 0.89221 0.87809 0.92771 0.92452 0.94662 0.92878 0.77687 0.93624 0.88053 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.17 1.57 8.22 -156.37 -1.28 0.28 16 3 N -0.39 -4.02 12.16 30.90 0.38 -3.65 16 4 O 0.08 0.73 11.31 18.12 0.20 0.94 16 5 C 0.19 1.61 7.77 -13.06 -0.10 1.51 16 6 C -0.01 -0.09 5.13 -27.88 -0.14 -0.23 16 7 C -0.14 -0.95 4.06 -27.88 -0.11 -1.06 16 8 C 0.52 5.61 7.71 -10.98 -0.08 5.52 16 9 O -0.54 -7.59 15.45 5.56 0.09 -7.51 16 10 N -0.61 -6.79 3.02 -172.30 -0.52 -7.31 16 11 C 0.07 0.60 6.54 -3.53 -0.02 0.58 16 12 C 0.05 0.50 6.99 37.31 0.26 0.76 16 13 O -0.36 -5.72 9.24 -35.23 -0.33 -6.04 16 14 C 0.08 1.23 2.61 -26.59 -0.07 1.16 16 15 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 16 C 0.18 3.59 2.77 -67.93 -0.19 3.41 16 17 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 18 C -0.16 -2.90 9.06 37.16 0.34 -2.57 16 19 N -0.72 -17.97 5.10 -53.42 -0.27 -18.24 16 20 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 24 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 C 0.08 1.10 5.82 -3.55 -0.02 1.08 16 29 N -0.48 -4.81 11.55 -9.87 -0.11 -4.92 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.12 0.92 8.10 -51.93 -0.42 0.50 16 34 H 0.11 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.10 0.50 8.01 -51.93 -0.42 0.09 16 36 H 0.10 0.64 7.66 -51.93 -0.40 0.24 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.50 6.06 -51.93 -0.31 0.19 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.08 7.56 -51.93 -0.39 0.69 16 42 H 0.03 0.52 6.41 -51.93 -0.33 0.18 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.39 10.51 7.58 -40.82 -0.31 10.20 16 45 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.10 1.44 7.08 -51.93 -0.37 1.08 16 47 H 0.08 1.05 6.26 -51.93 -0.33 0.73 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -34.74 386.54 -7.38 -42.13 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.04 Total: 5.61 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.30 Total: 3.25 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.19 Total: -61.57 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.03 Total: -12.61 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.74 -7.38 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282915726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.805 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds