Wall clock time and date at job start Tue Mar 31 2020 21:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29940 * 126.28748 * 2 1 4 4 O 1.21304 * 110.25045 * 180.02562 * 3 2 1 5 5 C 1.33641 * 109.81437 * 0.02562 * 4 3 2 6 6 C 1.50693 * 126.55620 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47105 * 270.02214 * 6 5 4 8 8 C 1.50703 * 109.47485 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99753 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00440 * 179.97438 * 8 7 6 11 11 C 1.47151 * 120.98286 * 359.72406 * 10 8 7 12 12 C 1.53293 * 108.38543 * 129.73405 * 11 10 8 13 13 O 1.42962 * 109.22230 * 52.30787 * 12 11 10 14 14 C 1.42957 * 114.16142 * 297.41398 * 13 12 11 15 15 H 1.09004 * 109.51938 * 302.65992 * 14 13 12 16 16 C 1.53002 * 109.55235 * 182.53192 * 14 13 12 17 17 H 1.09008 * 109.47208 * 180.23196 * 16 14 13 18 18 C 1.52996 * 109.47051 * 60.23201 * 16 14 13 19 19 N 1.46502 * 109.47258 * 300.22685 * 16 14 13 20 20 C 1.36933 * 120.00282 * 204.99446 * 19 16 14 21 21 H 1.08000 * 120.00305 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00011 * 180.02562 * 20 19 16 23 23 N 1.31620 * 120.00325 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99908 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46978 * 89.99856 * 24 22 20 26 26 H 1.48502 * 109.47181 * 209.99590 * 24 22 20 27 27 H 1.48496 * 109.47248 * 329.99772 * 24 22 20 28 28 C 1.47156 * 120.98466 * 180.02562 * 10 8 7 29 29 N 1.31138 * 106.89192 * 0.22047 * 5 4 3 30 30 H 1.09004 * 109.47073 * 89.96799 * 1 2 3 31 31 H 1.08998 * 109.47154 * 209.97035 * 1 2 3 32 32 H 1.08998 * 109.46587 * 329.97143 * 1 2 3 33 33 H 1.09006 * 109.47356 * 150.02203 * 6 5 4 34 34 H 1.08999 * 109.47387 * 30.02497 * 6 5 4 35 35 H 1.09002 * 109.47271 * 60.00241 * 7 6 5 36 36 H 1.08996 * 109.47479 * 299.99927 * 7 6 5 37 37 H 1.08998 * 109.68184 * 249.46000 * 11 10 8 38 38 H 1.09003 * 109.67897 * 10.00956 * 11 10 8 39 39 H 1.09001 * 109.51429 * 292.37701 * 12 11 10 40 40 H 1.09002 * 109.55320 * 172.25789 * 12 11 10 41 41 H 1.09003 * 109.47321 * 59.99989 * 18 16 14 42 42 H 1.09000 * 109.47205 * 180.02562 * 18 16 14 43 43 H 1.08995 * 109.47190 * 299.99818 * 18 16 14 44 44 H 0.97004 * 119.99475 * 25.00648 * 19 16 14 45 45 H 0.96999 * 120.00307 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.67563 * 349.98862 * 28 10 8 47 47 H 1.08998 * 109.67968 * 110.50341 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5300 -0.6212 -0.0015 6 6 4.7969 -1.4371 -0.0029 7 6 5.2250 -1.7117 -1.4458 8 6 6.4924 -2.5271 -1.4473 9 8 7.0028 -2.8565 -0.3975 10 7 7.0582 -2.8911 -2.6151 11 6 6.4536 -2.5094 -3.9012 12 6 7.5410 -1.8785 -4.7783 13 8 8.6648 -2.7600 -4.8419 14 6 9.2932 -2.9989 -3.5802 15 1 9.6079 -2.0504 -3.1447 16 6 10.5136 -3.9001 -3.7786 17 1 10.9893 -4.0847 -2.8153 18 6 11.5087 -3.2122 -4.7153 19 7 10.0900 -5.1736 -4.3659 20 6 10.8456 -6.2998 -4.1769 21 1 11.7536 -6.2494 -3.5944 22 6 10.4445 -7.5063 -4.7339 23 7 11.1704 -8.5890 -4.5518 24 14 8.8742 -7.5934 -5.7421 25 1 9.1863 -7.3232 -7.1686 26 1 8.2779 -8.9474 -5.6136 27 1 7.9102 -6.5789 -5.2455 28 6 8.2953 -3.6877 -2.6417 29 7 2.3030 -1.0841 -0.0063 30 1 -0.3633 0.0006 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3632 0.8897 0.5143 33 1 4.6209 -2.3826 0.5101 34 1 5.5845 -0.8861 0.5112 35 1 5.4012 -0.7663 -1.9588 36 1 4.4375 -2.2628 -1.9598 37 1 6.0514 -3.3942 -4.3947 38 1 5.6544 -1.7879 -3.7313 39 1 7.8493 -0.9260 -4.3473 40 1 7.1500 -1.7141 -5.7824 41 1 11.8239 -2.2647 -4.2782 42 1 12.3779 -3.8544 -4.8569 43 1 11.0330 -3.0276 -5.6784 44 1 9.2743 -5.2189 -4.8890 45 1 10.8903 -9.4320 -4.9413 46 1 8.7157 -3.7464 -1.6377 47 1 8.0780 -4.6910 -3.0080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282915727.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:22 Heat of formation + Delta-G solvation = 6.976679 kcal Electronic energy + Delta-G solvation = -29627.835224 eV Core-core repulsion = 25428.946632 eV Total energy + Delta-G solvation = -4198.888592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.98482 -40.53929 -38.69002 -36.52814 -35.72773 -35.09584 -34.70691 -32.40992 -31.97127 -30.50937 -29.58870 -28.95848 -28.13872 -25.99293 -24.20475 -23.78301 -23.35090 -22.34459 -21.53823 -19.87607 -19.30821 -18.49903 -18.00114 -17.75100 -17.32670 -16.52189 -16.22806 -15.90800 -15.35540 -14.98057 -14.89115 -14.57197 -14.36019 -14.10646 -14.04642 -13.83464 -13.57943 -13.20909 -13.16354 -12.95997 -12.91119 -12.62274 -12.46990 -12.22503 -11.99843 -11.75504 -11.74500 -11.61585 -11.42106 -11.33835 -10.96640 -10.87608 -10.66185 -10.41091 -10.29592 -10.09017 -10.00601 -9.85894 -9.56091 -8.96231 -8.57493 -7.25033 -5.75506 -3.10587 0.71047 1.79205 2.31644 2.39984 2.77139 3.23016 3.38622 3.43155 3.46798 3.62659 3.78546 4.11479 4.31427 4.48570 4.59813 4.60911 4.62769 4.77049 4.91082 4.92598 4.95019 4.95363 5.10816 5.12719 5.18927 5.28495 5.30092 5.41403 5.49300 5.51948 5.54195 5.58264 5.60891 5.63226 5.82730 6.09796 6.15760 6.27809 6.35455 6.46176 6.69622 7.03180 7.18650 7.27676 7.76137 7.93355 8.01130 8.43684 9.23055 9.95069 10.16066 11.42753 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018307 B = 0.002362 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.070529 B =11853.324260 C =12305.304453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.387 5.387 4 O 0.077 5.923 5 C 0.188 3.812 6 C -0.013 4.013 7 C -0.138 4.138 8 C 0.519 3.481 9 O -0.536 6.536 10 N -0.612 5.612 11 C 0.068 3.932 12 C 0.047 3.953 13 O -0.363 6.363 14 C 0.075 3.925 15 H 0.061 0.939 16 C 0.188 3.812 17 H 0.070 0.930 18 C -0.161 4.161 19 N -0.742 5.742 20 C -0.242 4.242 21 H 0.091 0.909 22 C 0.005 3.995 23 N -0.934 5.934 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.277 1.277 28 C 0.084 3.916 29 N -0.480 5.480 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.103 0.897 41 H 0.036 0.964 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.367 0.633 45 H 0.259 0.741 46 H 0.102 0.898 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.184 20.719 5.630 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.096 5.096 4 O 0.019 5.981 5 C -0.032 4.032 6 C -0.052 4.052 7 C -0.179 4.179 8 C 0.307 3.693 9 O -0.413 6.413 10 N -0.346 5.346 11 C -0.055 4.055 12 C -0.031 4.031 13 O -0.281 6.281 14 C 0.015 3.985 15 H 0.079 0.921 16 C 0.078 3.922 17 H 0.087 0.913 18 C -0.221 4.221 19 N -0.386 5.386 20 C -0.372 4.372 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.581 5.581 24 Si 0.715 3.285 25 H -0.212 1.212 26 H -0.220 1.220 27 H -0.203 1.203 28 C -0.038 4.038 29 N -0.214 5.214 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.200 0.800 45 H 0.069 0.931 46 H 0.120 0.880 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.318 20.787 6.106 28.371 hybrid contribution -1.175 -0.100 -0.733 1.389 sum -19.493 20.687 5.373 28.927 Atomic orbital electron populations 1.20154 0.82866 1.04743 1.04391 1.25955 1.00687 0.83494 1.00403 1.74656 0.89401 1.23927 1.21631 1.85306 1.22357 1.24822 1.65581 1.28827 0.96970 0.82132 0.95297 1.19985 0.87874 0.99270 0.98085 1.21652 0.97073 1.01946 0.97228 1.20246 0.85477 0.80152 0.83461 1.90743 1.64098 1.55860 1.30603 1.48209 1.26826 1.54030 1.05503 1.22527 0.96858 1.01359 0.84757 1.22901 0.87069 0.92647 1.00478 1.88079 1.43855 1.66260 1.29922 1.23000 0.93430 0.98149 0.83871 0.92107 1.20243 0.90032 0.85231 0.96709 0.91270 1.22319 1.00397 0.98686 1.00694 1.42728 1.28136 1.04657 1.63084 1.19070 1.04842 0.85497 1.27767 0.89151 1.24650 0.98300 0.95568 1.00551 1.69699 1.39389 0.99527 1.49521 0.86555 0.84533 0.76569 0.80870 1.21152 1.21971 1.20337 1.22480 0.83425 0.95520 1.02339 1.71951 0.99737 1.29364 1.20373 0.89243 0.88931 0.89483 0.86072 0.86863 0.88063 0.87827 0.90062 0.89186 0.92905 0.87851 0.94493 0.92237 0.92676 0.79968 0.93109 0.87973 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.17 1.58 8.22 -156.38 -1.28 0.30 16 3 N -0.39 -4.08 12.16 30.90 0.38 -3.70 16 4 O 0.08 0.75 11.31 18.11 0.20 0.95 16 5 C 0.19 1.66 7.77 -13.05 -0.10 1.56 16 6 C -0.01 -0.10 5.13 -27.89 -0.14 -0.24 16 7 C -0.14 -1.01 4.05 -27.88 -0.11 -1.12 16 8 C 0.52 6.01 7.71 -10.99 -0.08 5.92 16 9 O -0.54 -8.06 15.45 5.55 0.09 -7.98 16 10 N -0.61 -7.45 3.02 -172.25 -0.52 -7.97 16 11 C 0.07 0.64 6.54 -3.54 -0.02 0.61 16 12 C 0.05 0.47 6.98 37.31 0.26 0.73 16 13 O -0.36 -5.36 9.23 -35.23 -0.33 -5.68 16 14 C 0.07 1.13 2.53 -26.56 -0.07 1.06 16 15 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 16 C 0.19 3.45 2.73 -67.93 -0.19 3.26 16 17 H 0.07 1.29 8.08 -51.92 -0.42 0.87 16 18 C -0.16 -2.77 9.35 37.16 0.35 -2.42 16 19 N -0.74 -16.87 4.09 -53.42 -0.22 -17.09 16 20 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 21 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 22 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 23 N -0.93 -29.08 13.97 55.49 0.78 -28.30 16 24 Si 0.88 22.06 27.74 -169.99 -4.71 17.35 16 25 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.28 -6.48 6.52 56.52 0.37 -6.12 16 28 C 0.08 1.29 5.86 -3.51 -0.02 1.27 16 29 N -0.48 -4.89 11.55 -9.87 -0.11 -5.01 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.12 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.11 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.10 0.54 7.67 -51.93 -0.40 0.14 16 36 H 0.10 0.68 8.01 -51.93 -0.42 0.26 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.52 6.06 -51.93 -0.31 0.21 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.97 7.69 -51.93 -0.40 0.57 16 44 H 0.37 8.42 5.07 -40.82 -0.21 8.21 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.10 1.66 7.08 -51.93 -0.37 1.29 16 47 H 0.09 1.68 7.28 -51.93 -0.38 1.30 16 LS Contribution 385.32 15.07 5.81 5.81 Total: -1.00 -34.92 385.32 -7.07 -41.99 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.14 Total: 5.39 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.29 Total: 4.23 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: 0.30 Total: -62.07 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.03 Total: -12.71 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.92 -7.07 -41.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282915727.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.971 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds