Wall clock time and date at job start Tue Mar 31 2020 21:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29940 * 126.28748 * 2 1 4 4 O 1.21304 * 110.25045 * 180.02562 * 3 2 1 5 5 C 1.33641 * 109.81437 * 0.02562 * 4 3 2 6 6 C 1.50693 * 126.55620 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47105 * 270.02214 * 6 5 4 8 8 C 1.50703 * 109.47485 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99753 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00440 * 179.97438 * 8 7 6 11 11 C 1.47151 * 120.98286 * 359.72406 * 10 8 7 12 12 C 1.53293 * 108.38543 * 129.73405 * 11 10 8 13 13 O 1.42962 * 109.22230 * 52.30787 * 12 11 10 14 14 C 1.42957 * 114.16142 * 297.41398 * 13 12 11 15 15 H 1.09004 * 109.51938 * 302.65992 * 14 13 12 16 16 C 1.53002 * 109.55235 * 182.53192 * 14 13 12 17 17 H 1.09008 * 109.47208 * 180.23196 * 16 14 13 18 18 C 1.52996 * 109.47051 * 60.23201 * 16 14 13 19 19 N 1.46502 * 109.47258 * 300.22685 * 16 14 13 20 20 C 1.36933 * 120.00282 * 204.99446 * 19 16 14 21 21 H 1.08000 * 120.00305 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00011 * 180.02562 * 20 19 16 23 23 N 1.31620 * 120.00325 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99908 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46978 * 89.99856 * 24 22 20 26 26 H 1.48502 * 109.47181 * 209.99590 * 24 22 20 27 27 H 1.48496 * 109.47248 * 329.99772 * 24 22 20 28 28 C 1.47156 * 120.98466 * 180.02562 * 10 8 7 29 29 N 1.31138 * 106.89192 * 0.22047 * 5 4 3 30 30 H 1.09004 * 109.47073 * 89.96799 * 1 2 3 31 31 H 1.08998 * 109.47154 * 209.97035 * 1 2 3 32 32 H 1.08998 * 109.46587 * 329.97143 * 1 2 3 33 33 H 1.09006 * 109.47356 * 150.02203 * 6 5 4 34 34 H 1.08999 * 109.47387 * 30.02497 * 6 5 4 35 35 H 1.09002 * 109.47271 * 60.00241 * 7 6 5 36 36 H 1.08996 * 109.47479 * 299.99927 * 7 6 5 37 37 H 1.08998 * 109.68184 * 249.46000 * 11 10 8 38 38 H 1.09003 * 109.67897 * 10.00956 * 11 10 8 39 39 H 1.09001 * 109.51429 * 292.37701 * 12 11 10 40 40 H 1.09002 * 109.55320 * 172.25789 * 12 11 10 41 41 H 1.09003 * 109.47321 * 59.99989 * 18 16 14 42 42 H 1.09000 * 109.47205 * 180.02562 * 18 16 14 43 43 H 1.08995 * 109.47190 * 299.99818 * 18 16 14 44 44 H 0.97004 * 119.99475 * 25.00648 * 19 16 14 45 45 H 0.96999 * 120.00307 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.67563 * 349.98862 * 28 10 8 47 47 H 1.08998 * 109.67968 * 110.50341 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5300 -0.6212 -0.0015 6 6 4.7969 -1.4371 -0.0029 7 6 5.2250 -1.7117 -1.4458 8 6 6.4924 -2.5271 -1.4473 9 8 7.0028 -2.8565 -0.3975 10 7 7.0582 -2.8911 -2.6151 11 6 6.4536 -2.5094 -3.9012 12 6 7.5410 -1.8785 -4.7783 13 8 8.6648 -2.7600 -4.8419 14 6 9.2932 -2.9989 -3.5802 15 1 9.6079 -2.0504 -3.1447 16 6 10.5136 -3.9001 -3.7786 17 1 10.9893 -4.0847 -2.8153 18 6 11.5087 -3.2122 -4.7153 19 7 10.0900 -5.1736 -4.3659 20 6 10.8456 -6.2998 -4.1769 21 1 11.7536 -6.2494 -3.5944 22 6 10.4445 -7.5063 -4.7339 23 7 11.1704 -8.5890 -4.5518 24 14 8.8742 -7.5934 -5.7421 25 1 9.1863 -7.3232 -7.1686 26 1 8.2779 -8.9474 -5.6136 27 1 7.9102 -6.5789 -5.2455 28 6 8.2953 -3.6877 -2.6417 29 7 2.3030 -1.0841 -0.0063 30 1 -0.3633 0.0006 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3632 0.8897 0.5143 33 1 4.6209 -2.3826 0.5101 34 1 5.5845 -0.8861 0.5112 35 1 5.4012 -0.7663 -1.9588 36 1 4.4375 -2.2628 -1.9598 37 1 6.0514 -3.3942 -4.3947 38 1 5.6544 -1.7879 -3.7313 39 1 7.8493 -0.9260 -4.3473 40 1 7.1500 -1.7141 -5.7824 41 1 11.8239 -2.2647 -4.2782 42 1 12.3779 -3.8544 -4.8569 43 1 11.0330 -3.0276 -5.6784 44 1 9.2743 -5.2189 -4.8890 45 1 10.8903 -9.4320 -4.9413 46 1 8.7157 -3.7464 -1.6377 47 1 8.0780 -4.6910 -3.0080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282915727.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:21 Heat of formation + Delta-G solvation = -19.288424 kcal Electronic energy + Delta-G solvation = -29628.974164 eV Core-core repulsion = 25428.946632 eV Total energy + Delta-G solvation = -4200.027532 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.67136 -41.50553 -39.74711 -37.23525 -37.19102 -35.80427 -35.74620 -34.21471 -32.78532 -31.89275 -30.50712 -30.11136 -29.08270 -26.86347 -25.54104 -24.83289 -24.49468 -23.41014 -22.23291 -21.33753 -20.22111 -19.76092 -19.19854 -18.68563 -18.15772 -17.66755 -17.08310 -16.93029 -16.39508 -16.26913 -15.94439 -15.78824 -15.32261 -15.13584 -14.87440 -14.70248 -14.49655 -14.45418 -14.31433 -13.97103 -13.83327 -13.63964 -13.59808 -13.27995 -13.23753 -12.92706 -12.82366 -12.53459 -12.47637 -12.34489 -12.27164 -12.09557 -12.09005 -11.79614 -11.70611 -11.55455 -11.13824 -10.99834 -10.98280 -10.80531 -9.62860 -9.24267 -7.98567 -5.29974 0.03990 1.12445 1.38104 1.41361 1.48423 1.52249 1.60803 1.92877 2.50886 2.63369 2.78141 3.03346 3.33814 3.39008 3.58912 3.70689 3.79365 3.93525 3.94576 3.98253 4.08676 4.17225 4.24933 4.35199 4.41131 4.49223 4.56231 4.56857 4.58552 4.64508 4.75856 4.78839 4.82596 4.86555 4.89669 4.90778 5.02692 5.05249 5.09074 5.21648 5.30289 5.59239 5.81543 6.21993 6.29840 6.31087 7.03850 7.09614 7.12752 7.89305 8.09714 9.23132 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018307 B = 0.002362 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.070529 B =11853.324260 C =12305.304453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.163 3.837 3 N -0.409 5.409 4 O 0.072 5.928 5 C 0.198 3.802 6 C -0.008 4.008 7 C -0.125 4.125 8 C 0.517 3.483 9 O -0.577 6.577 10 N -0.613 5.613 11 C 0.066 3.934 12 C 0.040 3.960 13 O -0.387 6.387 14 C 0.092 3.908 15 H 0.085 0.915 16 C 0.176 3.824 17 H 0.060 0.940 18 C -0.150 4.150 19 N -0.742 5.742 20 C -0.220 4.220 21 H 0.059 0.941 22 C -0.066 4.066 23 N -0.985 5.985 24 Si 0.952 3.048 25 H -0.282 1.282 26 H -0.300 1.300 27 H -0.254 1.254 28 C 0.090 3.910 29 N -0.502 5.502 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.072 0.928 40 H 0.128 0.872 41 H 0.070 0.930 42 H 0.033 0.967 43 H 0.053 0.947 44 H 0.368 0.632 45 H 0.255 0.745 46 H 0.085 0.915 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.913 23.730 4.693 31.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 N -0.120 5.120 4 O 0.016 5.984 5 C -0.022 4.022 6 C -0.047 4.047 7 C -0.166 4.166 8 C 0.307 3.693 9 O -0.457 6.457 10 N -0.347 5.347 11 C -0.056 4.056 12 C -0.037 4.037 13 O -0.306 6.306 14 C 0.033 3.967 15 H 0.102 0.898 16 C 0.068 3.932 17 H 0.078 0.922 18 C -0.210 4.210 19 N -0.386 5.386 20 C -0.351 4.351 21 H 0.077 0.923 22 C -0.257 4.257 23 N -0.636 5.636 24 Si 0.781 3.219 25 H -0.208 1.208 26 H -0.227 1.227 27 H -0.178 1.178 28 C -0.034 4.034 29 N -0.237 5.237 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.151 0.849 36 H 0.137 0.863 37 H 0.092 0.908 38 H 0.151 0.849 39 H 0.090 0.910 40 H 0.146 0.854 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.202 0.798 45 H 0.064 0.936 46 H 0.103 0.897 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.068 23.881 5.159 32.261 hybrid contribution -0.289 -0.949 -0.362 1.056 sum -21.356 22.932 4.797 31.701 Atomic orbital electron populations 1.20350 0.80612 1.05666 1.05598 1.26615 1.02106 0.82997 0.99268 1.74654 0.89765 1.24622 1.22944 1.85282 1.22213 1.25052 1.65820 1.28967 0.97001 0.81945 0.94283 1.19975 0.87514 0.98820 0.98440 1.21630 0.94789 1.02664 0.97494 1.20960 0.86166 0.79663 0.82502 1.90731 1.65451 1.57447 1.32086 1.48273 1.25857 1.53485 1.07050 1.22773 0.97603 1.02169 0.83070 1.23254 0.85668 0.92448 1.02334 1.88028 1.45648 1.67680 1.29257 1.22625 0.91845 0.97932 0.84333 0.89759 1.20492 0.92313 0.84273 0.96163 0.92178 1.22155 0.98791 0.99547 1.00465 1.42678 1.27613 1.05003 1.63343 1.19042 1.03628 0.87020 1.25410 0.92299 1.25428 1.02119 0.95318 1.02875 1.69879 1.41789 1.00162 1.51818 0.85441 0.80821 0.76589 0.79089 1.20804 1.22724 1.17825 1.22107 0.85333 0.94693 1.01246 1.71980 1.00393 1.29966 1.21341 0.87781 0.88127 0.88422 0.86869 0.86056 0.84931 0.86340 0.90782 0.84907 0.91007 0.85383 0.91086 0.94792 0.92808 0.79823 0.93577 0.89666 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.51 71.24 0.75 0.18 16 2 C 0.16 2.77 8.22 138.47 1.14 3.91 16 3 N -0.41 -7.91 12.16 -60.32 -0.73 -8.64 16 4 O 0.07 1.26 11.31 74.85 0.85 2.11 16 5 C 0.20 3.07 7.77 88.38 0.69 3.76 16 6 C -0.01 -0.10 5.13 29.84 0.15 0.05 16 7 C -0.13 -1.38 4.05 29.85 0.12 -1.26 16 8 C 0.52 10.81 7.71 87.66 0.68 11.49 16 9 O -0.58 -16.96 15.45 -3.05 -0.05 -17.00 16 10 N -0.61 -13.44 3.02 -817.27 -2.47 -15.91 16 11 C 0.07 0.96 6.54 86.35 0.56 1.52 16 12 C 0.04 0.62 6.98 72.08 0.50 1.12 16 13 O -0.39 -10.29 9.23 -148.98 -1.37 -11.67 16 14 C 0.09 2.60 2.53 30.71 0.08 2.68 16 15 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 16 C 0.18 6.39 2.73 44.99 0.12 6.51 16 17 H 0.06 2.28 8.08 -2.38 -0.02 2.26 16 18 C -0.15 -4.98 9.35 71.98 0.67 -4.31 16 19 N -0.74 -33.87 4.09 -322.93 -1.32 -35.19 16 20 C -0.22 -12.39 10.41 84.03 0.87 -11.52 16 21 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 22 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 23 N -0.99 -63.67 13.97 21.65 0.30 -63.37 16 24 Si 0.95 46.24 27.74 68.60 1.90 48.14 16 25 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 27 H -0.25 -11.14 6.52 99.48 0.65 -10.49 16 28 C 0.09 2.70 5.86 86.37 0.51 3.20 16 29 N -0.50 -9.27 11.55 -303.21 -3.50 -12.77 16 30 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.11 1.66 8.10 -2.38 -0.02 1.64 16 34 H 0.12 1.35 8.10 -2.39 -0.02 1.33 16 35 H 0.13 0.70 7.67 -2.39 -0.02 0.68 16 36 H 0.12 1.05 8.01 -2.39 -0.02 1.03 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.13 0.78 6.06 -2.39 -0.01 0.77 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 42 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.80 7.69 -2.39 -0.02 1.78 16 44 H 0.37 16.59 5.07 -92.71 -0.47 16.12 16 45 H 0.26 15.81 8.31 -92.71 -0.77 15.03 16 46 H 0.08 2.81 7.08 -2.39 -0.02 2.80 16 47 H 0.06 2.15 7.28 -2.39 -0.02 2.13 16 Total: -1.00 -79.50 385.32 1.38 -78.12 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.46 Total: 22.33 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 7.31 Total: 13.86 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -7.72 Total: -135.89 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.58 Total: -26.56 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.90 Total: 48.14 kcal Total: -79.50 1.38 -78.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282915727.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.831 kcal (2) G-P(sol) polarization free energy of solvation -79.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds