Wall clock time and date at job start Tue Mar 31 2020 21:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29948 * 126.28788 * 2 1 4 4 O 1.21306 * 110.25038 * 179.97438 * 3 2 1 5 5 C 1.33642 * 109.81161 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.54949 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47265 * 270.02202 * 6 5 4 8 8 C 1.50698 * 109.47265 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99877 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99919 * 180.02562 * 8 7 6 11 11 C 1.47147 * 120.98306 * 359.97438 * 10 8 7 12 12 C 1.53297 * 108.38372 * 129.48972 * 11 10 8 13 13 O 1.42963 * 109.22268 * 52.30371 * 12 11 10 14 14 C 1.42959 * 114.16914 * 297.41811 * 13 12 11 15 15 H 1.09004 * 109.51011 * 302.61082 * 14 13 12 16 16 C 1.52992 * 109.51491 * 182.50223 * 14 13 12 17 17 H 1.09002 * 109.47103 * 184.99979 * 16 14 13 18 18 C 1.52997 * 109.47482 * 305.00226 * 16 14 13 19 19 N 1.46497 * 109.47081 * 65.00502 * 16 14 13 20 20 C 1.36940 * 120.00565 * 154.99853 * 19 16 14 21 21 H 1.08004 * 119.99402 * 359.97438 * 20 19 16 22 22 C 1.38815 * 120.00150 * 179.97438 * 20 19 16 23 23 N 1.31618 * 120.00111 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99847 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47120 * 59.99555 * 24 22 20 26 26 H 1.48500 * 109.47078 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46925 * 300.00019 * 24 22 20 28 28 C 1.47154 * 120.98120 * 180.02562 * 10 8 7 29 29 N 1.31127 * 106.89608 * 0.22327 * 5 4 3 30 30 H 1.09001 * 109.47122 * 89.97775 * 1 2 3 31 31 H 1.09000 * 109.47197 * 209.97811 * 1 2 3 32 32 H 1.09001 * 109.47305 * 329.98008 * 1 2 3 33 33 H 1.09006 * 109.47144 * 150.02276 * 6 5 4 34 34 H 1.09000 * 109.47255 * 30.02393 * 6 5 4 35 35 H 1.09006 * 109.46979 * 59.99973 * 7 6 5 36 36 H 1.09000 * 109.47140 * 300.00262 * 7 6 5 37 37 H 1.08997 * 109.68646 * 9.76468 * 11 10 8 38 38 H 1.08997 * 109.71486 * 249.23005 * 11 10 8 39 39 H 1.08997 * 109.51351 * 292.37644 * 12 11 10 40 40 H 1.09004 * 109.55695 * 172.25149 * 12 11 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 18 16 14 42 42 H 1.09001 * 109.46832 * 299.99974 * 18 16 14 43 43 H 1.09004 * 109.47261 * 179.97438 * 18 16 14 44 44 H 0.97006 * 119.99921 * 334.99446 * 19 16 14 45 45 H 0.96997 * 119.99796 * 179.97438 * 23 22 20 46 46 H 1.08995 * 109.68546 * 110.78772 * 28 10 8 47 47 H 1.08997 * 109.68226 * 350.22864 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7969 -1.4370 0.0003 7 6 5.2261 -1.7124 -1.4422 8 6 6.4935 -2.5277 -1.4423 9 8 7.0036 -2.8557 -0.3920 10 7 7.0607 -2.8914 -2.6095 11 6 6.4606 -2.5048 -3.8962 12 6 7.5511 -1.8705 -4.7671 13 8 8.6751 -2.7518 -4.8301 14 6 9.2992 -2.9956 -3.5672 15 1 9.6131 -2.0488 -3.1274 16 6 10.5196 -3.8966 -3.7657 17 1 10.9426 -4.1544 -2.7947 18 6 10.0974 -5.1743 -4.4936 19 7 11.5242 -3.1892 -4.5636 20 6 12.8464 -3.5297 -4.4580 21 1 13.1486 -4.3195 -3.7862 22 6 13.7982 -2.8597 -5.2145 23 7 13.4297 -1.8976 -6.0336 24 14 15.6017 -3.3247 -5.0711 25 1 15.7775 -4.7490 -5.4527 26 1 16.4077 -2.4661 -5.9757 27 1 16.0535 -3.1283 -3.6701 28 6 8.2979 -3.6879 -2.6348 29 7 2.3030 -1.0841 -0.0052 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3634 0.8898 0.5141 33 1 4.6205 -2.3823 0.5136 34 1 5.5841 -0.8857 0.5146 35 1 5.4025 -0.7672 -1.9556 36 1 4.4390 -2.2638 -1.9565 37 1 5.6608 -1.7840 -3.7266 38 1 6.0597 -3.3873 -4.3949 39 1 7.8579 -0.9197 -4.3314 40 1 7.1637 -1.7023 -5.7720 41 1 9.6744 -4.9164 -5.4645 42 1 9.3500 -5.7006 -3.8998 43 1 10.9670 -5.8160 -4.6354 44 1 11.2528 -2.4796 -5.1667 45 1 14.0949 -1.4293 -6.5619 46 1 8.0821 -4.6896 -3.0063 47 1 8.7148 -3.7504 -1.6297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282915728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:26 Heat of formation + Delta-G solvation = 3.812553 kcal Electronic energy + Delta-G solvation = -29235.518197 eV Core-core repulsion = 25036.492398 eV Total energy + Delta-G solvation = -4199.025799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.98213 -40.55560 -38.62681 -36.52841 -35.57868 -35.10418 -34.61735 -32.60147 -31.95688 -30.33783 -29.58425 -28.55886 -27.64871 -25.91972 -24.59235 -23.82534 -23.49928 -22.32591 -21.55200 -19.71633 -19.33480 -18.48751 -17.97750 -17.44825 -17.16091 -16.46161 -16.19633 -15.87401 -15.32149 -15.06326 -14.84299 -14.52666 -14.45321 -14.06394 -14.00587 -13.89405 -13.35792 -13.22349 -13.15102 -13.07092 -12.82490 -12.64568 -12.52499 -12.19837 -12.00340 -11.75439 -11.69429 -11.42711 -11.34833 -11.15456 -10.84691 -10.73675 -10.57932 -10.36578 -10.29526 -10.12279 -9.87725 -9.86238 -9.65106 -8.89211 -8.57727 -6.93701 -5.73500 -3.02329 0.71363 1.78733 2.31352 2.35292 2.73438 3.22252 3.45801 3.50237 3.51113 3.62705 3.92324 4.09667 4.30404 4.48043 4.56300 4.59579 4.69645 4.78748 4.90677 4.94179 4.95428 5.02861 5.10522 5.12742 5.26485 5.30195 5.39005 5.40935 5.48349 5.58974 5.60382 5.63265 5.67173 5.77117 5.95156 5.97121 6.16268 6.29432 6.44930 6.63918 6.81133 7.12030 7.16284 7.43802 7.71387 7.76308 7.88318 8.44704 9.56538 10.13918 10.50408 11.48821 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.001936 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.592586 B =14460.302006 C =14528.392431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.386 5.386 4 O 0.079 5.921 5 C 0.188 3.812 6 C -0.013 4.013 7 C -0.138 4.138 8 C 0.520 3.480 9 O -0.538 6.538 10 N -0.611 5.611 11 C 0.070 3.930 12 C 0.045 3.955 13 O -0.357 6.357 14 C 0.076 3.924 15 H 0.064 0.936 16 C 0.185 3.815 17 H 0.060 0.940 18 C -0.163 4.163 19 N -0.719 5.719 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.082 3.918 29 N -0.481 5.481 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.056 0.944 42 H 0.034 0.966 43 H 0.052 0.948 44 H 0.389 0.611 45 H 0.255 0.745 46 H 0.082 0.918 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.045 1.966 9.188 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.095 5.095 4 O 0.021 5.979 5 C -0.033 4.033 6 C -0.052 4.052 7 C -0.179 4.179 8 C 0.308 3.692 9 O -0.415 6.415 10 N -0.345 5.345 11 C -0.053 4.053 12 C -0.033 4.033 13 O -0.275 6.275 14 C 0.016 3.984 15 H 0.082 0.918 16 C 0.074 3.926 17 H 0.077 0.923 18 C -0.223 4.223 19 N -0.360 5.360 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.040 4.040 29 N -0.215 5.215 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.223 0.777 45 H 0.065 0.935 46 H 0.100 0.900 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -26.168 2.170 9.611 27.961 hybrid contribution 0.860 0.140 -0.130 0.881 sum -25.308 2.310 9.481 27.124 Atomic orbital electron populations 1.20149 0.82871 1.04725 1.04391 1.25949 1.00675 0.83502 1.00478 1.74670 0.89398 1.23926 1.21493 1.85318 1.22341 1.24791 1.65492 1.28810 0.96940 0.82181 0.95326 1.19983 0.87939 0.99220 0.98071 1.21654 0.96922 1.02077 0.97271 1.20265 0.85502 0.80029 0.83412 1.90736 1.64203 1.55945 1.30594 1.48161 1.26604 1.54001 1.05687 1.22548 0.97020 1.01190 0.84527 1.22904 0.86906 0.93028 1.00459 1.88117 1.43839 1.65880 1.29680 1.22998 0.92512 0.99143 0.83721 0.91786 1.20196 0.86555 0.90442 0.95426 0.92265 1.22420 0.99933 0.98809 1.01093 1.42343 1.02235 1.42157 1.49301 1.19206 0.83352 1.14785 1.19787 0.91206 1.24738 0.97961 0.98749 0.99440 1.69665 1.32899 1.25768 1.29583 0.86280 0.85208 0.77549 0.77204 1.21289 1.21750 1.21300 1.22539 0.84055 0.94872 1.02566 1.71931 0.99719 1.29400 1.20481 0.89239 0.88966 0.89477 0.86150 0.86823 0.87905 0.87809 0.89227 0.90156 0.92772 0.87804 0.92457 0.94672 0.92885 0.77684 0.93522 0.89989 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 36.00 0.38 0.05 16 2 C 0.17 1.54 8.22 -156.37 -1.28 0.25 16 3 N -0.39 -4.07 12.16 30.90 0.38 -3.70 16 4 O 0.08 0.77 11.31 18.10 0.20 0.97 16 5 C 0.19 1.61 7.77 -13.06 -0.10 1.51 16 6 C -0.01 -0.09 5.13 -27.88 -0.14 -0.23 16 7 C -0.14 -0.95 4.06 -27.88 -0.11 -1.06 16 8 C 0.52 5.61 7.71 -10.99 -0.08 5.53 16 9 O -0.54 -7.60 15.45 5.55 0.09 -7.51 16 10 N -0.61 -6.79 3.02 -172.26 -0.52 -7.31 16 11 C 0.07 0.61 6.54 -3.54 -0.02 0.58 16 12 C 0.05 0.50 6.98 37.31 0.26 0.76 16 13 O -0.36 -5.71 9.24 -35.23 -0.33 -6.03 16 14 C 0.08 1.23 2.61 -26.56 -0.07 1.16 16 15 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 16 C 0.18 3.59 2.77 -67.94 -0.19 3.41 16 17 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 18 C -0.16 -2.91 9.06 37.16 0.34 -2.58 16 19 N -0.72 -17.95 5.10 -53.43 -0.27 -18.22 16 20 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 21 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 24 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 C 0.08 1.10 5.82 -3.51 -0.02 1.08 16 29 N -0.48 -4.69 11.55 -9.87 -0.11 -4.80 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.12 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.11 0.75 8.10 -51.93 -0.42 0.32 16 35 H 0.10 0.56 7.66 -51.93 -0.40 0.16 16 36 H 0.10 0.59 8.02 -51.93 -0.42 0.17 16 37 H 0.09 0.50 6.05 -51.93 -0.31 0.18 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.08 7.56 -51.93 -0.39 0.69 16 42 H 0.03 0.52 6.41 -51.93 -0.33 0.18 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.39 10.49 7.58 -40.82 -0.31 10.18 16 45 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.08 1.06 6.26 -51.93 -0.33 0.73 16 47 H 0.10 1.44 7.08 -51.93 -0.37 1.08 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -34.64 386.55 -7.38 -42.03 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.04 Total: 5.60 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.30 Total: 3.22 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.19 Total: -61.45 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.04 Total: -12.57 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.64 -7.38 -42.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282915728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.840 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds