Wall clock time and date at job start Tue Mar 31 2020 21:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29948 * 126.28788 * 2 1 4 4 O 1.21306 * 110.25038 * 179.97438 * 3 2 1 5 5 C 1.33642 * 109.81161 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.54949 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47265 * 270.02202 * 6 5 4 8 8 C 1.50698 * 109.47265 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99877 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99919 * 180.02562 * 8 7 6 11 11 C 1.47147 * 120.98306 * 359.97438 * 10 8 7 12 12 C 1.53297 * 108.38372 * 129.48972 * 11 10 8 13 13 O 1.42963 * 109.22268 * 52.30371 * 12 11 10 14 14 C 1.42959 * 114.16914 * 297.41811 * 13 12 11 15 15 H 1.09004 * 109.51011 * 302.61082 * 14 13 12 16 16 C 1.52992 * 109.51491 * 182.50223 * 14 13 12 17 17 H 1.09002 * 109.47103 * 184.99979 * 16 14 13 18 18 C 1.52997 * 109.47482 * 305.00226 * 16 14 13 19 19 N 1.46497 * 109.47081 * 65.00502 * 16 14 13 20 20 C 1.36940 * 120.00565 * 154.99853 * 19 16 14 21 21 H 1.08004 * 119.99402 * 359.97438 * 20 19 16 22 22 C 1.38815 * 120.00150 * 179.97438 * 20 19 16 23 23 N 1.31618 * 120.00111 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99847 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47120 * 59.99555 * 24 22 20 26 26 H 1.48500 * 109.47078 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46925 * 300.00019 * 24 22 20 28 28 C 1.47154 * 120.98120 * 180.02562 * 10 8 7 29 29 N 1.31127 * 106.89608 * 0.22327 * 5 4 3 30 30 H 1.09001 * 109.47122 * 89.97775 * 1 2 3 31 31 H 1.09000 * 109.47197 * 209.97811 * 1 2 3 32 32 H 1.09001 * 109.47305 * 329.98008 * 1 2 3 33 33 H 1.09006 * 109.47144 * 150.02276 * 6 5 4 34 34 H 1.09000 * 109.47255 * 30.02393 * 6 5 4 35 35 H 1.09006 * 109.46979 * 59.99973 * 7 6 5 36 36 H 1.09000 * 109.47140 * 300.00262 * 7 6 5 37 37 H 1.08997 * 109.68646 * 9.76468 * 11 10 8 38 38 H 1.08997 * 109.71486 * 249.23005 * 11 10 8 39 39 H 1.08997 * 109.51351 * 292.37644 * 12 11 10 40 40 H 1.09004 * 109.55695 * 172.25149 * 12 11 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 18 16 14 42 42 H 1.09001 * 109.46832 * 299.99974 * 18 16 14 43 43 H 1.09004 * 109.47261 * 179.97438 * 18 16 14 44 44 H 0.97006 * 119.99921 * 334.99446 * 19 16 14 45 45 H 0.96997 * 119.99796 * 179.97438 * 23 22 20 46 46 H 1.08995 * 109.68546 * 110.78772 * 28 10 8 47 47 H 1.08997 * 109.68226 * 350.22864 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7969 -1.4370 0.0003 7 6 5.2261 -1.7124 -1.4422 8 6 6.4935 -2.5277 -1.4423 9 8 7.0036 -2.8557 -0.3920 10 7 7.0607 -2.8914 -2.6095 11 6 6.4606 -2.5048 -3.8962 12 6 7.5511 -1.8705 -4.7671 13 8 8.6751 -2.7518 -4.8301 14 6 9.2992 -2.9956 -3.5672 15 1 9.6131 -2.0488 -3.1274 16 6 10.5196 -3.8966 -3.7657 17 1 10.9426 -4.1544 -2.7947 18 6 10.0974 -5.1743 -4.4936 19 7 11.5242 -3.1892 -4.5636 20 6 12.8464 -3.5297 -4.4580 21 1 13.1486 -4.3195 -3.7862 22 6 13.7982 -2.8597 -5.2145 23 7 13.4297 -1.8976 -6.0336 24 14 15.6017 -3.3247 -5.0711 25 1 15.7775 -4.7490 -5.4527 26 1 16.4077 -2.4661 -5.9757 27 1 16.0535 -3.1283 -3.6701 28 6 8.2979 -3.6879 -2.6348 29 7 2.3030 -1.0841 -0.0052 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3634 0.8898 0.5141 33 1 4.6205 -2.3823 0.5136 34 1 5.5841 -0.8857 0.5146 35 1 5.4025 -0.7672 -1.9556 36 1 4.4390 -2.2638 -1.9565 37 1 5.6608 -1.7840 -3.7266 38 1 6.0597 -3.3873 -4.3949 39 1 7.8579 -0.9197 -4.3314 40 1 7.1637 -1.7023 -5.7720 41 1 9.6744 -4.9164 -5.4645 42 1 9.3500 -5.7006 -3.8998 43 1 10.9670 -5.8160 -4.6354 44 1 11.2528 -2.4796 -5.1667 45 1 14.0949 -1.4293 -6.5619 46 1 8.0821 -4.6896 -3.0063 47 1 8.7148 -3.7504 -1.6297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282915728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:25 Heat of formation + Delta-G solvation = -21.983601 kcal Electronic energy + Delta-G solvation = -29236.636802 eV Core-core repulsion = 25036.492398 eV Total energy + Delta-G solvation = -4200.144404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.66111 -41.49912 -39.71187 -37.19012 -37.09707 -35.76805 -35.71194 -34.31469 -32.74486 -31.75430 -30.10429 -29.94128 -28.78624 -26.92405 -26.06632 -24.84054 -24.48150 -23.47250 -22.24003 -21.15849 -20.17292 -19.30835 -19.16799 -18.67090 -18.13110 -17.61181 -17.03902 -16.90821 -16.58312 -16.08984 -15.99659 -15.78395 -15.27358 -15.22932 -14.98426 -14.67150 -14.47549 -14.35304 -14.00993 -13.97625 -13.78647 -13.60612 -13.52336 -13.23640 -13.09551 -12.90841 -12.78484 -12.41820 -12.38202 -12.33086 -12.25307 -12.19959 -12.08542 -11.81725 -11.61748 -11.53812 -11.15880 -10.98435 -10.90275 -10.79908 -9.57138 -8.98568 -7.90614 -5.18958 0.05050 1.13410 1.48376 1.51404 1.52764 1.57292 1.62666 1.94261 2.58235 2.63755 2.83161 3.05008 3.39729 3.43299 3.61340 3.72932 3.94447 3.96868 3.98277 4.03550 4.09305 4.17563 4.35520 4.39265 4.42399 4.50148 4.55783 4.58378 4.59505 4.64465 4.68482 4.77658 4.83848 4.88804 4.90660 4.91325 5.00756 5.10311 5.12203 5.26319 5.31449 5.53304 5.64735 6.28934 6.29383 6.33101 7.04025 7.10338 7.37340 8.13719 8.38056 9.32623 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.001936 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.592586 B =14460.302006 C =14528.392431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.163 3.837 3 N -0.411 5.411 4 O 0.068 5.932 5 C 0.197 3.803 6 C -0.008 4.008 7 C -0.128 4.128 8 C 0.519 3.481 9 O -0.576 6.576 10 N -0.614 5.614 11 C 0.075 3.925 12 C 0.035 3.965 13 O -0.384 6.384 14 C 0.090 3.910 15 H 0.041 0.959 16 C 0.174 3.826 17 H 0.058 0.942 18 C -0.148 4.148 19 N -0.732 5.732 20 C -0.240 4.240 21 H 0.077 0.923 22 C -0.077 4.077 23 N -0.969 5.969 24 Si 0.972 3.028 25 H -0.278 1.278 26 H -0.297 1.297 27 H -0.279 1.279 28 C 0.093 3.907 29 N -0.499 5.499 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.126 0.874 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.375 0.625 45 H 0.249 0.751 46 H 0.092 0.908 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.197 1.333 9.528 29.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 N -0.123 5.123 4 O 0.013 5.987 5 C -0.023 4.023 6 C -0.047 4.047 7 C -0.168 4.168 8 C 0.309 3.691 9 O -0.455 6.455 10 N -0.347 5.347 11 C -0.047 4.047 12 C -0.042 4.042 13 O -0.303 6.303 14 C 0.031 3.969 15 H 0.059 0.941 16 C 0.065 3.935 17 H 0.076 0.924 18 C -0.208 4.208 19 N -0.373 5.373 20 C -0.371 4.371 21 H 0.095 0.905 22 C -0.269 4.269 23 N -0.620 5.620 24 Si 0.801 3.199 25 H -0.204 1.204 26 H -0.223 1.223 27 H -0.205 1.205 28 C -0.031 4.031 29 N -0.233 5.233 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.144 0.856 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.054 0.946 44 H 0.207 0.793 45 H 0.058 0.942 46 H 0.110 0.890 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -28.353 1.506 9.972 30.093 hybrid contribution 1.428 0.328 -0.203 1.479 sum -26.925 1.834 9.769 28.701 Atomic orbital electron populations 1.20355 0.80516 1.05703 1.05631 1.26640 1.02128 0.83008 0.99139 1.74672 0.89764 1.24791 1.23034 1.85292 1.22279 1.25245 1.65896 1.29011 0.97120 0.81895 0.94259 1.19988 0.87352 0.98958 0.98437 1.21639 0.95162 1.02504 0.97495 1.20893 0.86190 0.79489 0.82534 1.90725 1.65504 1.57373 1.31930 1.48243 1.25795 1.53690 1.06971 1.22701 0.96615 1.02575 0.82774 1.23226 0.86250 0.92228 1.02508 1.88061 1.45731 1.67079 1.29416 1.22565 0.92254 0.97517 0.84591 0.94134 1.20447 0.86964 0.91478 0.94570 0.92392 1.22213 1.00042 0.97652 1.00852 1.42521 1.02580 1.42358 1.49792 1.19620 0.84717 1.14038 1.18772 0.90547 1.25545 1.02134 0.99338 0.99913 1.69830 1.33798 1.27338 1.31012 0.85236 0.80209 0.77276 0.77181 1.20440 1.22332 1.20474 1.22218 0.84628 0.95246 1.00968 1.71961 1.00199 1.29820 1.21343 0.87746 0.87916 0.88547 0.86236 0.86548 0.85807 0.85670 0.85398 0.88798 0.93306 0.85647 0.93561 0.91035 0.94626 0.79295 0.94181 0.89047 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 71.23 0.75 0.21 16 2 C 0.16 2.75 8.22 138.46 1.14 3.89 16 3 N -0.41 -8.20 12.16 -60.29 -0.73 -8.94 16 4 O 0.07 1.25 11.31 74.84 0.85 2.10 16 5 C 0.20 3.05 7.77 88.38 0.69 3.74 16 6 C -0.01 -0.10 5.13 29.85 0.15 0.06 16 7 C -0.13 -1.35 4.06 29.85 0.12 -1.23 16 8 C 0.52 10.11 7.71 87.66 0.68 10.78 16 9 O -0.58 -15.71 15.45 -3.04 -0.05 -15.76 16 10 N -0.61 -12.29 3.02 -817.29 -2.47 -14.76 16 11 C 0.08 1.04 6.54 86.36 0.56 1.61 16 12 C 0.03 0.71 6.98 72.08 0.50 1.22 16 13 O -0.38 -12.07 9.24 -148.98 -1.38 -13.44 16 14 C 0.09 2.93 2.61 30.70 0.08 3.01 16 15 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 16 C 0.17 6.84 2.77 44.99 0.12 6.96 16 17 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 18 C -0.15 -5.20 9.06 71.98 0.65 -4.55 16 19 N -0.73 -37.42 5.10 -322.95 -1.65 -39.07 16 20 C -0.24 -13.40 9.93 84.03 0.83 -12.57 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 23 N -0.97 -60.06 13.06 21.65 0.28 -59.78 16 24 Si 0.97 46.58 29.55 68.60 2.03 48.61 16 25 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 26 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 28 C 0.09 2.39 5.82 86.37 0.50 2.89 16 29 N -0.50 -8.82 11.55 -303.18 -3.50 -12.32 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.12 1.52 8.10 -2.38 -0.02 1.50 16 34 H 0.12 1.37 8.10 -2.39 -0.02 1.35 16 35 H 0.12 0.86 7.66 -2.38 -0.02 0.84 16 36 H 0.13 0.88 8.02 -2.39 -0.02 0.86 16 37 H 0.13 0.81 6.05 -2.39 -0.01 0.80 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.05 1.72 7.56 -2.39 -0.02 1.70 16 42 H 0.07 1.97 6.41 -2.39 -0.02 1.95 16 43 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.38 20.94 7.58 -92.70 -0.70 20.24 16 45 H 0.25 15.04 8.31 -92.71 -0.77 14.26 16 46 H 0.09 2.17 6.26 -2.39 -0.01 2.15 16 47 H 0.09 2.53 7.08 -2.39 -0.02 2.52 16 Total: -1.00 -77.05 386.55 0.93 -76.12 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.29 Total: 25.23 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 7.25 Total: 11.99 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -8.07 Total: -134.86 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.58 Total: -27.10 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -77.05 0.93 -76.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282915728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.141 kcal (2) G-P(sol) polarization free energy of solvation -77.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds