Wall clock time and date at job start Tue Mar 31 2020 21:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29946 * 126.28429 * 2 1 4 4 O 1.21301 * 110.24776 * 179.97438 * 3 2 1 5 5 C 1.33648 * 109.81020 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.54906 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46941 * 270.02131 * 6 5 4 8 8 C 1.50703 * 109.47194 * 180.02562 * 7 6 5 9 9 O 1.21277 * 120.00011 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99622 * 179.97438 * 8 7 6 11 11 C 1.47152 * 120.98601 * 0.02562 * 10 8 7 12 12 C 1.53294 * 108.38638 * 230.51083 * 11 10 8 13 13 O 1.42965 * 109.22018 * 307.70154 * 12 11 10 14 14 C 1.42954 * 114.17326 * 62.57922 * 13 12 11 15 15 H 1.09000 * 109.55536 * 57.36217 * 14 13 12 16 16 C 1.52999 * 109.51813 * 177.49672 * 14 13 12 17 17 H 1.09000 * 109.47486 * 184.74573 * 16 14 13 18 18 C 1.53006 * 109.46623 * 304.74402 * 16 14 13 19 19 N 1.46500 * 109.46944 * 64.74142 * 16 14 13 20 20 C 1.36939 * 119.99555 * 155.00323 * 19 16 14 21 21 H 1.07999 * 120.00498 * 0.02562 * 20 19 16 22 22 C 1.38813 * 119.99885 * 179.97438 * 20 19 16 23 23 N 1.31621 * 120.00371 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00131 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47087 * 89.99301 * 24 22 20 26 26 H 1.48490 * 109.47356 * 210.00089 * 24 22 20 27 27 H 1.48507 * 109.46606 * 330.00045 * 24 22 20 28 28 C 1.47157 * 120.97757 * 179.97438 * 10 8 7 29 29 N 1.31125 * 106.89487 * 0.22477 * 5 4 3 30 30 H 1.08997 * 109.47116 * 90.02182 * 1 2 3 31 31 H 1.08992 * 109.47171 * 210.02934 * 1 2 3 32 32 H 1.09004 * 109.47173 * 330.02780 * 1 2 3 33 33 H 1.08995 * 109.47427 * 150.02346 * 6 5 4 34 34 H 1.08998 * 109.47644 * 30.01800 * 6 5 4 35 35 H 1.09004 * 109.47072 * 59.99880 * 7 6 5 36 36 H 1.09005 * 109.46946 * 300.00037 * 7 6 5 37 37 H 1.08995 * 109.68150 * 350.23706 * 11 10 8 38 38 H 1.08999 * 109.68291 * 110.78694 * 11 10 8 39 39 H 1.09005 * 109.51115 * 67.61753 * 12 11 10 40 40 H 1.09002 * 109.51568 * 187.72201 * 12 11 10 41 41 H 1.09001 * 109.47002 * 179.97438 * 18 16 14 42 42 H 1.08993 * 109.46955 * 300.00075 * 18 16 14 43 43 H 1.09000 * 109.47050 * 59.99904 * 18 16 14 44 44 H 0.96998 * 120.00364 * 335.00076 * 19 16 14 45 45 H 0.96993 * 120.00193 * 180.02562 * 23 22 20 46 46 H 1.08995 * 109.68217 * 9.76560 * 28 10 8 47 47 H 1.09003 * 109.71113 * 249.22822 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5298 -0.6212 0.0015 6 6 4.7969 -1.4370 0.0018 7 6 5.2257 -1.7137 -1.4407 8 6 6.4924 -2.5300 -1.4404 9 8 7.0024 -2.8578 -0.3900 10 7 7.0586 -2.8958 -2.6075 11 6 6.4586 -2.5094 -3.8944 12 6 6.3327 -3.7646 -4.7654 13 8 7.6001 -4.4231 -4.8279 14 6 8.0800 -4.8904 -3.5650 15 1 7.3483 -5.5676 -3.1246 16 6 9.4054 -5.6286 -3.7631 17 1 9.7282 -6.0568 -2.8141 18 6 9.2175 -6.7473 -4.7898 19 7 10.4205 -4.6887 -4.2451 20 6 11.7477 -4.9395 -4.0198 21 1 12.0462 -5.8303 -3.4872 22 6 12.7097 -4.0492 -4.4771 23 7 13.9854 -4.2899 -4.2601 24 14 12.1936 -2.5087 -5.3991 25 1 11.9841 -1.4005 -4.4331 26 1 13.2566 -2.1299 -6.3641 27 1 10.9295 -2.7712 -6.1329 28 6 8.2956 -3.6923 -2.6325 29 7 2.3030 -1.0840 -0.0034 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8896 0.5142 32 1 -0.3634 0.8903 0.5134 33 1 4.6207 -2.3818 0.5159 34 1 5.5842 -0.8853 0.5153 35 1 5.4019 -0.7688 -1.9549 36 1 4.4383 -2.2655 -1.9543 37 1 5.4714 -2.0797 -3.7249 38 1 7.0966 -1.7795 -4.3925 39 1 5.5940 -4.4375 -4.3298 40 1 6.0191 -3.4808 -5.7700 41 1 10.1618 -7.2729 -4.9313 42 1 8.4622 -7.4465 -4.4312 43 1 8.8947 -6.3190 -5.7388 44 1 10.1525 -3.8888 -4.7239 45 1 14.6574 -3.6677 -4.5793 46 1 8.5249 -4.0460 -1.6273 47 1 9.1188 -3.0816 -3.0034 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282915729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:30 Heat of formation + Delta-G solvation = 7.770285 kcal Electronic energy + Delta-G solvation = -29647.011577 eV Core-core repulsion = 25448.157399 eV Total energy + Delta-G solvation = -4198.854179 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.98254 -40.54052 -38.69213 -36.52843 -35.73592 -35.09253 -34.71628 -32.39992 -31.97120 -30.49963 -29.59104 -28.95051 -28.14936 -25.99734 -24.18640 -23.77106 -23.36349 -22.37382 -21.54393 -19.85535 -19.30719 -18.49578 -17.99732 -17.76550 -17.31846 -16.51420 -16.20790 -15.89661 -15.47280 -14.93994 -14.88324 -14.48025 -14.36606 -14.10250 -14.06058 -13.89623 -13.61002 -13.21517 -13.14932 -12.95518 -12.86374 -12.63900 -12.46321 -12.24565 -11.99517 -11.77180 -11.69795 -11.62608 -11.42530 -11.35921 -10.96681 -10.87954 -10.62902 -10.40959 -10.29560 -10.10350 -10.00299 -9.86208 -9.56548 -8.96248 -8.57480 -7.25638 -5.75875 -3.11141 0.71411 1.78913 2.32235 2.40357 2.77282 3.22628 3.38220 3.43120 3.46236 3.62729 3.78717 4.11717 4.31623 4.49625 4.58538 4.60497 4.62727 4.77993 4.90270 4.92617 4.95001 4.95166 5.09071 5.13153 5.19026 5.28054 5.30145 5.41249 5.49196 5.51008 5.53177 5.58353 5.60522 5.63709 5.83164 6.10699 6.15970 6.27524 6.35320 6.47259 6.70745 7.04629 7.18702 7.28061 7.76288 7.93784 8.00380 8.43178 9.22122 9.94172 10.14798 11.42364 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.002371 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.631521 B =11806.603364 C =12280.875041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.387 5.387 4 O 0.078 5.922 5 C 0.189 3.811 6 C -0.013 4.013 7 C -0.138 4.138 8 C 0.519 3.481 9 O -0.535 6.535 10 N -0.612 5.612 11 C 0.068 3.932 12 C 0.047 3.953 13 O -0.363 6.363 14 C 0.074 3.926 15 H 0.061 0.939 16 C 0.188 3.812 17 H 0.070 0.930 18 C -0.160 4.160 19 N -0.743 5.743 20 C -0.242 4.242 21 H 0.091 0.909 22 C 0.006 3.994 23 N -0.933 5.933 24 Si 0.879 3.121 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.273 1.273 28 C 0.085 3.915 29 N -0.481 5.481 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.103 0.897 41 H 0.058 0.942 42 H 0.036 0.964 43 H 0.055 0.945 44 H 0.366 0.634 45 H 0.259 0.741 46 H 0.103 0.897 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.441 6.530 4.783 28.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.096 5.096 4 O 0.020 5.980 5 C -0.032 4.032 6 C -0.052 4.052 7 C -0.179 4.179 8 C 0.307 3.693 9 O -0.412 6.412 10 N -0.346 5.346 11 C -0.055 4.055 12 C -0.031 4.031 13 O -0.281 6.281 14 C 0.015 3.985 15 H 0.079 0.921 16 C 0.078 3.922 17 H 0.088 0.912 18 C -0.220 4.220 19 N -0.386 5.386 20 C -0.372 4.372 21 H 0.109 0.891 22 C -0.190 4.190 23 N -0.581 5.581 24 Si 0.709 3.291 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.199 1.199 28 C -0.037 4.037 29 N -0.215 5.215 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.199 0.801 45 H 0.069 0.931 46 H 0.121 0.879 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.474 6.750 5.258 28.776 hybrid contribution -0.292 1.245 -0.672 1.444 sum -27.767 7.995 4.586 29.256 Atomic orbital electron populations 1.20149 0.82871 1.04731 1.04372 1.25950 1.00676 0.83512 1.00470 1.74665 0.89403 1.23939 1.21544 1.85316 1.22340 1.24818 1.65518 1.28824 0.96951 0.82155 0.95257 1.19988 0.87916 0.99237 0.98097 1.21656 0.96973 1.02042 0.97232 1.20246 0.85414 0.80208 0.83476 1.90743 1.64193 1.55756 1.30528 1.48222 1.26982 1.53932 1.05501 1.22528 0.99463 0.98766 0.84760 1.22901 0.87128 0.92605 1.00500 1.88093 1.34824 1.75372 1.29818 1.23000 0.97572 0.94090 0.83858 0.92087 1.20245 0.85079 0.89859 0.97027 0.91226 1.22297 1.00626 0.98453 1.00623 1.42766 1.02850 1.24792 1.68233 1.19070 0.80650 1.06948 1.30512 0.89124 1.24647 0.95059 0.98514 1.00782 1.69694 0.99102 1.37868 1.51436 0.86616 0.77724 0.84588 0.80148 1.21208 1.21847 1.19935 1.22471 0.85372 0.93359 1.02494 1.71930 0.99717 1.29383 1.20492 0.89259 0.88954 0.89485 0.86116 0.86810 0.87972 0.87914 0.89178 0.90049 0.92921 0.87865 0.92316 0.94517 0.92605 0.80080 0.93099 0.87881 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 36.01 0.38 0.04 16 2 C 0.17 1.56 8.22 -156.38 -1.28 0.28 16 3 N -0.39 -4.13 12.16 30.90 0.38 -3.75 16 4 O 0.08 0.78 11.31 18.09 0.20 0.98 16 5 C 0.19 1.67 7.77 -13.06 -0.10 1.57 16 6 C -0.01 -0.10 5.13 -27.88 -0.14 -0.24 16 7 C -0.14 -1.01 4.06 -27.88 -0.11 -1.12 16 8 C 0.52 6.02 7.71 -10.99 -0.08 5.93 16 9 O -0.54 -8.10 15.45 5.56 0.09 -8.01 16 10 N -0.61 -7.43 3.02 -172.25 -0.52 -7.95 16 11 C 0.07 0.62 6.54 -3.53 -0.02 0.60 16 12 C 0.05 0.47 6.99 37.31 0.26 0.73 16 13 O -0.36 -5.33 9.24 -35.23 -0.33 -5.66 16 14 C 0.07 1.12 2.57 -26.56 -0.07 1.05 16 15 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 16 C 0.19 3.45 2.80 -67.93 -0.19 3.26 16 17 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 18 C -0.16 -2.77 9.30 37.16 0.35 -2.43 16 19 N -0.74 -16.84 4.05 -53.42 -0.22 -17.06 16 20 C -0.24 -6.61 10.41 -15.06 -0.16 -6.77 16 21 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 22 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 23 N -0.93 -29.05 13.97 55.49 0.78 -28.27 16 24 Si 0.88 21.90 27.74 -169.99 -4.71 17.18 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.27 -6.48 6.52 56.52 0.37 -6.11 16 28 C 0.08 1.30 5.82 -3.51 -0.02 1.28 16 29 N -0.48 -4.79 11.55 -9.87 -0.11 -4.91 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.12 0.92 8.10 -51.93 -0.42 0.50 16 34 H 0.11 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.10 0.60 8.02 -51.93 -0.42 0.18 16 36 H 0.10 0.62 7.66 -51.93 -0.40 0.22 16 37 H 0.09 0.52 6.05 -51.93 -0.31 0.21 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 1.00 7.57 -51.93 -0.39 0.60 16 44 H 0.37 8.36 4.94 -40.82 -0.20 8.16 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.10 1.69 7.08 -51.93 -0.37 1.32 16 47 H 0.09 1.64 6.94 -51.93 -0.36 1.28 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -34.91 384.71 -7.06 -41.97 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.11 Total: 5.43 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.30 Total: 4.25 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: 0.30 Total: -61.94 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.04 Total: -12.69 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.91 -7.06 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282915729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.737 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds