Wall clock time and date at job start Tue Mar 31 2020 21:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29940 * 125.37766 * 2 1 4 4 C 1.36072 * 108.47450 * 180.16373 * 3 2 1 5 5 C 1.47417 * 126.44733 * 179.82025 * 4 3 2 6 6 O 1.21613 * 119.99925 * 179.69165 * 5 4 3 7 7 N 1.34777 * 120.00113 * 359.69684 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27547 * 7 5 4 9 9 H 1.09004 * 109.47372 * 34.71852 * 8 7 5 10 10 C 1.52997 * 109.47036 * 274.72131 * 8 7 5 11 11 C 1.52999 * 109.46963 * 154.72290 * 8 7 5 12 12 C 1.52997 * 109.47080 * 294.99494 * 11 8 7 13 13 C 1.53003 * 109.47411 * 180.02562 * 12 11 8 14 14 N 1.46895 * 109.47440 * 180.02562 * 13 12 11 15 15 C 1.46903 * 110.99913 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46892 * 179.97438 * 15 14 13 17 17 O 1.21289 * 120.00213 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99860 * 179.97438 * 16 15 14 19 19 C 1.37088 * 120.00106 * 180.02562 * 18 16 15 20 20 H 1.08006 * 120.00150 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00319 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99576 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00103 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47061 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47101 * 119.99692 * 23 21 19 26 26 H 1.48498 * 109.47033 * 239.99582 * 23 21 19 27 27 C 1.36091 * 107.10222 * 359.56652 * 4 3 2 28 28 O 1.34049 * 125.37814 * 179.67926 * 2 1 3 29 29 H 1.08994 * 109.47324 * 180.35021 * 1 2 3 30 30 H 1.09006 * 109.46938 * 300.34772 * 1 2 3 31 31 H 1.09001 * 109.47084 * 60.34452 * 1 2 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 33 33 H 1.08997 * 109.47293 * 60.00168 * 10 8 7 34 34 H 1.09003 * 109.47189 * 180.02562 * 10 8 7 35 35 H 1.09009 * 109.47238 * 300.00198 * 10 8 7 36 36 H 1.08997 * 109.47492 * 54.99915 * 11 8 7 37 37 H 1.09007 * 109.47243 * 174.99697 * 11 8 7 38 38 H 1.09002 * 109.47641 * 299.99883 * 12 11 8 39 39 H 1.08998 * 109.46968 * 60.00255 * 12 11 8 40 40 H 1.09002 * 109.46933 * 300.00830 * 13 12 11 41 41 H 1.09007 * 109.47158 * 60.00052 * 13 12 11 42 42 H 1.00900 * 111.00424 * 303.95624 * 14 13 12 43 43 H 1.08994 * 109.47325 * 300.00586 * 15 14 13 44 44 H 1.08999 * 109.46899 * 60.00844 * 15 14 13 45 45 H 0.96997 * 119.99581 * 0.02562 * 18 16 15 46 46 H 0.97003 * 119.99844 * 180.02562 * 22 21 19 47 47 H 1.07999 * 126.52710 * 180.28097 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6638 -0.0037 5 6 4.7440 1.5438 -0.0087 6 8 5.8605 1.0618 -0.0060 7 7 4.5879 2.8825 -0.0162 8 6 5.7633 3.7569 -0.0273 9 1 6.5562 3.2924 -0.6136 10 6 6.2503 3.9748 1.4066 11 6 5.3909 5.1040 -0.6497 12 6 5.0231 4.9017 -2.1210 13 6 4.6512 6.2489 -2.7437 14 7 4.2975 6.0546 -4.1561 15 6 3.9335 7.3299 -4.7878 16 6 3.5783 7.0913 -6.2329 17 8 3.6235 5.9693 -6.6912 18 7 3.2094 8.1246 -7.0156 19 6 2.8858 7.9076 -8.3299 20 1 2.9260 6.9084 -8.7381 21 6 2.5060 8.9729 -9.1371 22 7 2.4565 10.1885 -8.6403 23 14 2.0643 8.6769 -10.9279 24 1 2.1987 7.2310 -11.2383 25 1 0.6640 9.1076 -11.1700 26 1 2.9797 9.4570 -11.7989 27 6 3.5660 -0.6970 0.0039 28 8 2.2831 -1.0930 0.0061 29 1 -0.3633 -1.0276 0.0063 30 1 -0.3633 0.5193 0.8869 31 1 -0.3633 0.5085 -0.8931 32 1 3.6973 3.2669 -0.0186 33 1 6.5156 3.0151 1.8501 34 1 7.1245 4.6258 1.3985 35 1 5.4574 4.4393 1.9931 36 1 4.5393 5.5273 -0.1172 37 1 6.2393 5.7846 -0.5775 38 1 5.8747 4.4785 -2.6536 39 1 4.1747 4.2212 -2.1931 40 1 3.7998 6.6727 -2.2111 41 1 5.5000 6.9292 -2.6715 42 1 5.0475 5.6033 -4.6580 43 1 3.0772 7.7610 -4.2692 44 1 4.7771 8.0178 -4.7303 45 1 3.1729 9.0219 -6.6489 46 1 2.1910 10.9322 -9.2037 47 1 4.4361 -1.3368 0.0078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283166261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:27 Heat of formation + Delta-G solvation = -66.503542 kcal Electronic energy + Delta-G solvation = -27865.041456 eV Core-core repulsion = 23662.966523 eV Total energy + Delta-G solvation = -4202.074934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.79853 -39.98097 -38.29862 -37.10710 -35.48119 -35.28830 -33.86825 -32.76867 -32.30659 -31.20645 -30.50860 -28.23953 -27.30231 -25.28259 -24.65901 -23.40022 -22.11364 -21.46635 -21.05757 -20.73685 -19.18496 -18.53346 -17.85904 -17.29609 -16.88903 -16.56306 -16.15428 -15.63339 -15.16490 -14.90610 -14.73526 -14.48279 -14.29526 -14.25931 -13.92161 -13.87837 -13.61212 -13.57038 -13.27625 -13.10316 -12.99465 -12.69097 -12.40911 -11.98766 -11.65920 -11.63530 -11.54817 -11.40602 -11.30111 -11.19932 -11.06674 -10.90678 -10.72246 -10.43538 -10.33148 -10.20797 -9.50509 -9.47563 -9.24513 -8.43254 -8.01588 -7.93670 -6.40280 -3.80885 0.74955 1.63143 2.18832 2.81204 3.02206 3.17420 3.27742 3.35377 3.48710 3.93129 4.07711 4.25991 4.39347 4.40488 4.61212 4.79525 4.84279 4.87557 4.93492 5.06495 5.07079 5.18755 5.24577 5.26430 5.29636 5.33151 5.36750 5.42462 5.54797 5.60460 5.68528 5.71894 5.78622 5.83387 5.93624 6.01745 6.09901 6.22630 6.26825 6.31764 7.00643 7.27662 7.31559 7.56942 7.71272 7.89083 8.08513 8.63352 9.19751 9.56351 10.08079 10.77639 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.001839 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.271648 B =15219.827818 C =16856.720684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.200 3.800 3 N -0.462 5.462 4 C -0.072 4.072 5 C 0.605 3.395 6 O -0.539 6.539 7 N -0.704 5.704 8 C 0.141 3.859 9 H 0.091 0.909 10 C -0.163 4.163 11 C -0.125 4.125 12 C -0.118 4.118 13 C 0.060 3.940 14 N -0.671 5.671 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.011 3.989 28 O -0.197 6.197 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.410 0.590 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.348 0.652 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 -15.172 24.228 28.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.010 4.010 3 N -0.192 5.192 4 C -0.192 4.192 5 C 0.390 3.610 6 O -0.416 6.416 7 N -0.355 5.355 8 C 0.037 3.963 9 H 0.109 0.891 10 C -0.221 4.221 11 C -0.164 4.164 12 C -0.156 4.156 13 C -0.070 4.070 14 N -0.303 5.303 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.181 4.181 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.063 4.063 28 O -0.083 6.083 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.246 0.754 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.168 0.832 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.770 -15.631 23.951 28.610 hybrid contribution 0.487 0.547 -0.781 1.071 sum 1.257 -15.083 23.170 27.675 Atomic orbital electron populations 1.20346 0.80721 1.05047 1.05575 1.26384 0.96730 0.78201 0.99636 1.70758 1.00619 1.29972 1.17893 1.21792 0.92201 0.93066 1.12110 1.16720 0.86109 0.82025 0.76128 1.90824 1.24295 1.75469 1.51042 1.45887 1.10794 1.05160 1.73620 1.21076 0.88045 0.90244 0.96948 0.89075 1.22179 1.01453 1.02335 0.96162 1.21876 1.02572 0.95751 0.96160 1.21568 1.02186 0.97815 0.94057 1.21966 0.98977 0.96218 0.89808 1.60056 1.46264 1.22517 1.01479 1.21666 1.00481 0.91038 0.94997 1.19845 0.84480 0.85840 0.87190 1.90522 1.58050 1.23046 1.75073 1.41874 1.59212 1.08712 1.10387 1.19755 1.41769 0.95993 0.85222 0.87893 1.25268 0.97555 0.94699 1.00538 1.69624 1.48434 0.99138 1.37196 0.85796 0.77965 0.78708 0.81855 1.19222 1.20740 1.20786 1.25275 0.84867 0.95696 1.00439 1.84409 1.16725 1.37995 1.69192 0.89134 0.88211 0.87956 0.75403 0.92136 0.91361 0.92358 0.91050 0.90118 0.91894 0.90792 0.91219 0.95669 0.83243 0.89654 0.93966 0.77465 0.91954 0.75338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.01 0.38 0.14 16 2 C 0.20 1.66 8.30 -13.08 -0.11 1.56 16 3 N -0.46 -4.84 11.06 -7.65 -0.08 -4.92 16 4 C -0.07 -0.78 6.99 -83.02 -0.58 -1.36 16 5 C 0.60 7.11 7.78 -12.52 -0.10 7.02 16 6 O -0.54 -7.54 16.55 5.27 0.09 -7.45 16 7 N -0.70 -6.94 4.53 -54.88 -0.25 -7.19 16 8 C 0.14 1.25 2.58 -67.93 -0.17 1.08 16 9 H 0.09 0.95 7.57 -51.93 -0.39 0.56 16 10 C -0.16 -1.26 9.49 37.16 0.35 -0.91 16 11 C -0.13 -1.00 4.75 -26.73 -0.13 -1.13 16 12 C -0.12 -1.27 5.36 -26.73 -0.14 -1.41 16 13 C 0.06 0.74 5.68 -3.83 -0.02 0.72 16 14 N -0.67 -11.28 6.13 -115.06 -0.70 -11.99 16 15 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 16 C 0.44 10.70 7.82 -10.98 -0.09 10.62 16 17 O -0.58 -16.29 15.78 5.55 0.09 -16.21 16 18 N -0.57 -14.61 5.29 -10.96 -0.06 -14.67 16 19 C -0.30 -8.44 9.68 -14.94 -0.14 -8.59 16 20 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 23 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 C 0.01 0.10 11.95 29.96 0.36 0.46 16 28 O -0.20 -1.68 10.73 6.51 0.07 -1.61 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.41 3.77 8.33 -40.82 -0.34 3.43 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.90 7.75 -51.93 -0.40 0.50 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.35 6.09 8.43 -39.29 -0.33 5.76 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 47 H 0.23 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 405.89 15.07 6.12 6.12 Total: -1.00 -35.37 405.89 -6.78 -42.14 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -7.22 Total: 14.05 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -0.52 Total: 9.55 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.37 Total: -62.84 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: 0.24 Total: -25.27 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.37 -6.78 -42.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283166261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.363 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds