Wall clock time and date at job start Tue Mar 31 2020 21:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29940 * 125.37766 * 2 1 4 4 C 1.36072 * 108.47450 * 180.16373 * 3 2 1 5 5 C 1.47417 * 126.44733 * 179.82025 * 4 3 2 6 6 O 1.21613 * 119.99925 * 179.69165 * 5 4 3 7 7 N 1.34777 * 120.00113 * 359.69684 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27547 * 7 5 4 9 9 H 1.09004 * 109.47372 * 34.71852 * 8 7 5 10 10 C 1.52997 * 109.47036 * 274.72131 * 8 7 5 11 11 C 1.52999 * 109.46963 * 154.72290 * 8 7 5 12 12 C 1.52997 * 109.47080 * 294.99494 * 11 8 7 13 13 C 1.53003 * 109.47411 * 180.02562 * 12 11 8 14 14 N 1.46895 * 109.47440 * 180.02562 * 13 12 11 15 15 C 1.46903 * 110.99913 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46892 * 179.97438 * 15 14 13 17 17 O 1.21289 * 120.00213 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99860 * 179.97438 * 16 15 14 19 19 C 1.37088 * 120.00106 * 180.02562 * 18 16 15 20 20 H 1.08006 * 120.00150 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00319 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99576 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00103 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47061 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47101 * 119.99692 * 23 21 19 26 26 H 1.48498 * 109.47033 * 239.99582 * 23 21 19 27 27 C 1.36091 * 107.10222 * 359.56652 * 4 3 2 28 28 O 1.34049 * 125.37814 * 179.67926 * 2 1 3 29 29 H 1.08994 * 109.47324 * 180.35021 * 1 2 3 30 30 H 1.09006 * 109.46938 * 300.34772 * 1 2 3 31 31 H 1.09001 * 109.47084 * 60.34452 * 1 2 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 33 33 H 1.08997 * 109.47293 * 60.00168 * 10 8 7 34 34 H 1.09003 * 109.47189 * 180.02562 * 10 8 7 35 35 H 1.09009 * 109.47238 * 300.00198 * 10 8 7 36 36 H 1.08997 * 109.47492 * 54.99915 * 11 8 7 37 37 H 1.09007 * 109.47243 * 174.99697 * 11 8 7 38 38 H 1.09002 * 109.47641 * 299.99883 * 12 11 8 39 39 H 1.08998 * 109.46968 * 60.00255 * 12 11 8 40 40 H 1.09002 * 109.46933 * 300.00830 * 13 12 11 41 41 H 1.09007 * 109.47158 * 60.00052 * 13 12 11 42 42 H 1.00900 * 111.00424 * 303.95624 * 14 13 12 43 43 H 1.08994 * 109.47325 * 300.00586 * 15 14 13 44 44 H 1.08999 * 109.46899 * 60.00844 * 15 14 13 45 45 H 0.96997 * 119.99581 * 0.02562 * 18 16 15 46 46 H 0.97003 * 119.99844 * 180.02562 * 22 21 19 47 47 H 1.07999 * 126.52710 * 180.28097 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6638 -0.0037 5 6 4.7440 1.5438 -0.0087 6 8 5.8605 1.0618 -0.0060 7 7 4.5879 2.8825 -0.0162 8 6 5.7633 3.7569 -0.0273 9 1 6.5562 3.2924 -0.6136 10 6 6.2503 3.9748 1.4066 11 6 5.3909 5.1040 -0.6497 12 6 5.0231 4.9017 -2.1210 13 6 4.6512 6.2489 -2.7437 14 7 4.2975 6.0546 -4.1561 15 6 3.9335 7.3299 -4.7878 16 6 3.5783 7.0913 -6.2329 17 8 3.6235 5.9693 -6.6912 18 7 3.2094 8.1246 -7.0156 19 6 2.8858 7.9076 -8.3299 20 1 2.9260 6.9084 -8.7381 21 6 2.5060 8.9729 -9.1371 22 7 2.4565 10.1885 -8.6403 23 14 2.0643 8.6769 -10.9279 24 1 2.1987 7.2310 -11.2383 25 1 0.6640 9.1076 -11.1700 26 1 2.9797 9.4570 -11.7989 27 6 3.5660 -0.6970 0.0039 28 8 2.2831 -1.0930 0.0061 29 1 -0.3633 -1.0276 0.0063 30 1 -0.3633 0.5193 0.8869 31 1 -0.3633 0.5085 -0.8931 32 1 3.6973 3.2669 -0.0186 33 1 6.5156 3.0151 1.8501 34 1 7.1245 4.6258 1.3985 35 1 5.4574 4.4393 1.9931 36 1 4.5393 5.5273 -0.1172 37 1 6.2393 5.7846 -0.5775 38 1 5.8747 4.4785 -2.6536 39 1 4.1747 4.2212 -2.1931 40 1 3.7998 6.6727 -2.2111 41 1 5.5000 6.9292 -2.6715 42 1 5.0475 5.6033 -4.6580 43 1 3.0772 7.7610 -4.2692 44 1 4.7771 8.0178 -4.7303 45 1 3.1729 9.0219 -6.6489 46 1 2.1910 10.9322 -9.2037 47 1 4.4361 -1.3368 0.0078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283166261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:26 Heat of formation + Delta-G solvation = -96.172520 kcal Electronic energy + Delta-G solvation = -27866.328000 eV Core-core repulsion = 23662.966523 eV Total energy + Delta-G solvation = -4203.361477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.47107 -40.83439 -40.17098 -38.06938 -36.68819 -36.00507 -35.86049 -33.58630 -33.27511 -33.02088 -31.39048 -28.78959 -28.65915 -26.71208 -25.65508 -24.71179 -22.81955 -22.38862 -21.77808 -21.54890 -21.04741 -19.91466 -19.27522 -17.97179 -17.84025 -17.62189 -17.30335 -17.07821 -16.51376 -16.05400 -15.97793 -15.70767 -15.56597 -15.22698 -15.03452 -14.87994 -14.71045 -14.29133 -14.19664 -14.04375 -13.91809 -13.53133 -13.33767 -13.29063 -13.10089 -12.97600 -12.77233 -12.42774 -12.38832 -12.32309 -12.15443 -12.10189 -11.92705 -11.80752 -11.57228 -11.52492 -11.31560 -10.37265 -10.26237 -10.03054 -9.95859 -9.31554 -8.48032 -5.96896 0.03580 0.92379 1.35906 1.41184 1.55638 1.57898 2.03306 2.06566 2.19045 2.28532 2.87703 2.91700 3.19010 3.48848 3.66844 3.77311 3.80395 4.03991 4.11753 4.27597 4.31431 4.39827 4.42543 4.51055 4.51544 4.56809 4.63648 4.66766 4.69396 4.73201 4.79798 4.82831 4.86425 4.90882 5.03686 5.22231 5.23699 5.28173 5.38595 5.40252 5.50020 5.89823 6.12329 6.26872 6.39461 6.55867 6.58917 7.05263 7.11304 7.54499 8.10134 8.69603 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.001839 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.271648 B =15219.827818 C =16856.720684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.200 3.800 3 N -0.488 5.488 4 C -0.102 4.102 5 C 0.600 3.400 6 O -0.570 6.570 7 N -0.697 5.697 8 C 0.139 3.861 9 H 0.072 0.928 10 C -0.156 4.156 11 C -0.113 4.113 12 C -0.112 4.112 13 C 0.062 3.938 14 N -0.690 5.690 15 C 0.066 3.934 16 C 0.436 3.564 17 O -0.626 6.626 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.077 0.923 21 C -0.014 4.014 22 N -0.919 5.919 23 Si 0.994 3.006 24 H -0.275 1.275 25 H -0.269 1.269 26 H -0.270 1.270 27 C 0.020 3.980 28 O -0.198 6.198 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.413 0.587 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.341 0.659 43 H 0.105 0.895 44 H 0.067 0.933 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.243 -14.361 25.174 28.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.009 4.009 3 N -0.218 5.218 4 C -0.221 4.221 5 C 0.386 3.614 6 O -0.451 6.451 7 N -0.347 5.347 8 C 0.036 3.964 9 H 0.090 0.910 10 C -0.214 4.214 11 C -0.151 4.151 12 C -0.150 4.150 13 C -0.066 4.066 14 N -0.322 5.322 15 C -0.067 4.067 16 C 0.223 3.777 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.095 0.905 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.817 3.183 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.195 1.195 27 C -0.054 4.054 28 O -0.084 6.084 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.125 0.875 32 H 0.250 0.750 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.159 0.841 43 H 0.123 0.877 44 H 0.085 0.915 45 H 0.231 0.769 46 H 0.088 0.912 47 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 0.124 -14.765 24.933 28.977 hybrid contribution 0.656 0.266 -1.042 1.260 sum 0.779 -14.499 23.891 27.957 Atomic orbital electron populations 1.20606 0.77828 1.06758 1.06396 1.27279 0.98106 0.77649 0.97884 1.70728 1.00665 1.31090 1.19355 1.21835 0.92265 0.93858 1.14169 1.16936 0.86073 0.82643 0.75742 1.90792 1.25407 1.76039 1.52825 1.45921 1.11314 1.04817 1.72678 1.21139 0.87265 0.90350 0.97682 0.90959 1.22115 1.02450 1.01812 0.95034 1.21800 1.03899 0.95394 0.93979 1.21486 1.01024 0.96649 0.95803 1.22062 1.00111 0.97318 0.87118 1.60080 1.46691 1.21942 1.03497 1.21535 1.02121 0.92319 0.90691 1.20949 0.82602 0.84733 0.89401 1.90489 1.59433 1.24716 1.76604 1.41938 1.59699 1.09358 1.10008 1.19691 1.44304 0.95435 0.86944 0.90494 1.26059 0.96665 0.94239 1.04364 1.69677 1.48034 0.99632 1.38692 0.84860 0.78323 0.78224 0.76853 1.19925 1.19456 1.19484 1.25737 0.85566 0.95418 0.98727 1.84440 1.16661 1.38127 1.69147 0.87016 0.86746 0.87517 0.74999 0.93933 0.89677 0.91281 0.89526 0.88215 0.92890 0.92641 0.90094 0.93851 0.84091 0.87690 0.91496 0.76886 0.91238 0.73120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 71.24 0.75 0.37 16 2 C 0.20 3.20 8.30 88.39 0.73 3.93 16 3 N -0.49 -10.22 11.06 -293.03 -3.24 -13.46 16 4 C -0.10 -2.26 6.99 40.41 0.28 -1.98 16 5 C 0.60 14.60 7.78 86.66 0.67 15.28 16 6 O -0.57 -16.63 16.55 -4.07 -0.07 -16.70 16 7 N -0.70 -13.86 4.53 -445.81 -2.02 -15.88 16 8 C 0.14 2.40 2.58 44.99 0.12 2.51 16 9 H 0.07 1.54 7.57 -2.39 -0.02 1.52 16 10 C -0.16 -2.23 9.49 71.98 0.68 -1.55 16 11 C -0.11 -1.57 4.75 30.59 0.15 -1.42 16 12 C -0.11 -2.28 5.36 30.59 0.16 -2.11 16 13 C 0.06 1.40 5.68 86.31 0.49 1.89 16 14 N -0.69 -22.56 6.13 -517.92 -3.17 -25.73 16 15 C 0.07 2.30 6.17 85.56 0.53 2.83 16 16 C 0.44 21.31 7.82 87.66 0.69 22.00 16 17 O -0.63 -35.91 15.78 -3.06 -0.05 -35.96 16 18 N -0.57 -29.94 5.29 -306.98 -1.62 -31.56 16 19 C -0.33 -19.31 9.68 84.04 0.81 -18.50 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 22 N -0.92 -49.85 13.05 21.66 0.28 -49.57 16 23 Si 0.99 43.33 29.55 68.60 2.03 45.35 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 C 0.02 0.34 11.95 67.32 0.80 1.15 16 28 O -0.20 -3.23 10.73 0.37 0.00 -3.23 16 29 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.41 7.57 8.33 -92.71 -0.77 6.80 16 33 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.34 7.75 -2.39 -0.02 1.32 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.34 11.92 8.43 -89.69 -0.76 11.16 16 43 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.40 19.56 7.90 -92.71 -0.73 18.82 16 46 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 47 H 0.25 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -78.13 405.89 -1.76 -79.89 By element: Atomic # 1 Polarization: 43.95 SS G_CDS: -1.24 Total: 42.71 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: 7.34 Total: 24.13 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -9.77 Total: -136.20 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -0.11 Total: -55.88 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -78.13 -1.76 -79.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283166261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.281 kcal (2) G-P(sol) polarization free energy of solvation -78.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds