Wall clock time and date at job start Tue Mar 31 2020 21:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41261 * 128.07796 * 2 1 4 4 N 1.30126 * 106.59158 * 180.23518 * 3 2 1 5 5 O 1.20889 * 111.98299 * 359.78065 * 4 3 2 6 6 C 1.34648 * 111.46558 * 359.97438 * 5 4 3 7 7 C 1.47513 * 126.94061 * 179.97438 * 6 5 4 8 8 O 1.21587 * 119.99300 * 180.02562 * 7 6 5 9 9 N 1.34770 * 120.00235 * 0.03064 * 7 6 5 10 10 C 1.46500 * 119.99955 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47175 * 324.99716 * 10 9 7 12 12 C 1.53006 * 109.46998 * 84.99585 * 10 9 7 13 13 C 1.52997 * 109.47204 * 204.99611 * 10 9 7 14 14 C 1.52996 * 109.46894 * 64.99698 * 13 10 9 15 15 C 1.53008 * 109.47120 * 180.02562 * 14 13 10 16 16 N 1.46898 * 109.47197 * 180.02562 * 15 14 13 17 17 C 1.46897 * 110.99839 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.46976 * 179.97438 * 17 16 15 19 19 O 1.21286 * 120.00286 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99624 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99572 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00345 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00032 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99812 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00137 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47169 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47222 * 119.99870 * 25 23 21 28 28 H 1.48500 * 109.47203 * 239.99962 * 25 23 21 29 29 H 1.08998 * 109.47124 * 270.12736 * 1 2 3 30 30 H 1.09004 * 109.47190 * 30.12634 * 1 2 3 31 31 H 1.08998 * 109.47261 * 150.12455 * 1 2 3 32 32 H 1.08006 * 126.70868 * 359.97438 * 3 2 1 33 33 H 0.96997 * 119.99935 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47002 * 179.97438 * 12 10 9 35 35 H 1.08993 * 109.46955 * 300.00226 * 12 10 9 36 36 H 1.09000 * 109.47050 * 60.00054 * 12 10 9 37 37 H 1.08994 * 109.47510 * 185.00146 * 13 10 9 38 38 H 1.09001 * 109.47096 * 305.00009 * 13 10 9 39 39 H 1.08998 * 109.47867 * 299.99927 * 14 13 10 40 40 H 1.08993 * 109.47122 * 60.00537 * 14 13 10 41 41 H 1.09003 * 109.46865 * 299.99902 * 15 14 13 42 42 H 1.09001 * 109.47171 * 60.00127 * 15 14 13 43 43 H 1.00902 * 110.99925 * 303.94928 * 16 15 14 44 44 H 1.08996 * 109.47792 * 300.00055 * 17 16 15 45 45 H 1.09000 * 109.47221 * 60.00138 * 17 16 15 46 46 H 0.97000 * 120.00413 * 0.02562 * 20 18 17 47 47 H 0.96997 * 119.99328 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6353 -0.0051 5 8 3.5995 -0.5735 -0.0039 6 6 2.3508 -1.0771 0.0029 7 6 1.9695 -2.5021 0.0058 8 8 0.7952 -2.8171 0.0117 9 7 2.9228 -3.4547 0.0020 10 6 2.5441 -4.8699 0.0055 11 1 1.6400 -5.0027 0.5997 12 6 2.2835 -5.3316 -1.4298 13 6 3.6783 -5.6999 0.6102 14 6 3.8556 -5.3247 2.0828 15 6 4.9902 -6.1543 2.6874 16 7 5.1601 -5.7945 4.1015 17 6 6.2432 -6.5734 4.7164 18 6 6.3878 -6.1773 6.1633 19 8 5.6600 -5.3300 6.6358 20 7 7.3260 -6.7648 6.9321 21 6 7.4573 -6.4048 8.2485 22 1 6.8092 -5.6503 8.6693 23 6 8.4249 -7.0100 9.0411 24 7 9.2139 -7.9278 8.5290 25 14 8.6042 -6.5191 10.8345 26 1 7.6031 -5.4729 11.1638 27 1 8.3804 -7.7067 11.6975 28 1 9.9711 -5.9880 11.0680 29 1 -0.3633 0.0023 1.0276 30 1 -0.3634 0.8889 -0.5158 31 1 -0.3634 -0.8911 -0.5119 32 1 2.0948 2.1542 -0.0004 33 1 3.8596 -3.2034 -0.0030 34 1 2.0022 -6.3847 -1.4273 35 1 1.4755 -4.7403 -1.8606 36 1 3.1876 -5.1988 -2.0240 37 1 3.4348 -6.7594 0.5319 38 1 4.6035 -5.4989 0.0701 39 1 4.0991 -4.2652 2.1611 40 1 2.9305 -5.5258 2.6228 41 1 4.7471 -7.2139 2.6092 42 1 5.9153 -5.9528 2.1472 43 1 5.3224 -4.8040 4.2056 44 1 6.0086 -7.6358 4.6519 45 1 7.1772 -6.3749 4.1907 46 1 7.9084 -7.4422 6.5541 47 1 9.8896 -8.3500 9.0822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283262391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:39 Heat of formation + Delta-G solvation = -25.379927 kcal Electronic energy + Delta-G solvation = -28068.930940 eV Core-core repulsion = 23868.639260 eV Total energy + Delta-G solvation = -4200.291680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.42041 -40.25708 -38.32051 -37.29698 -35.66677 -35.06364 -33.88903 -33.17469 -32.27751 -31.22178 -30.62766 -28.67189 -27.34468 -25.26196 -24.59999 -23.51971 -22.89022 -21.54499 -21.20270 -20.97402 -19.21121 -19.04247 -18.17650 -17.86933 -16.89160 -16.26437 -16.07010 -15.69790 -15.36523 -15.07495 -14.71295 -14.58492 -14.40399 -14.12107 -13.92017 -13.73356 -13.62574 -13.59659 -13.31000 -13.15870 -13.06688 -12.66513 -12.50594 -11.94044 -11.84679 -11.69183 -11.57502 -11.46901 -11.36506 -11.06357 -10.94652 -10.81642 -10.79366 -10.60222 -10.33569 -10.21514 -9.92951 -9.52399 -9.51172 -8.44929 -8.04023 -7.94722 -6.41024 -3.81676 0.38625 1.65837 2.19331 2.58675 2.81820 3.17040 3.27490 3.35055 3.74421 3.91972 4.03149 4.15073 4.23065 4.31762 4.53602 4.59344 4.71756 4.75297 4.88832 5.03204 5.12452 5.21123 5.22653 5.24107 5.27263 5.28428 5.41177 5.42411 5.45231 5.51608 5.66158 5.68124 5.77135 5.80308 5.85357 5.97067 5.99973 6.11503 6.18811 6.29377 6.89992 7.24754 7.53828 7.56337 7.68164 7.68402 8.07689 8.62366 9.18969 9.55430 10.06998 10.76847 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.001795 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.547204 B =15598.310843 C =16916.268815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.118 4.118 3 C -0.016 4.016 4 N -0.340 5.340 5 O 0.117 5.883 6 C -0.097 4.097 7 C 0.609 3.391 8 O -0.510 6.510 9 N -0.708 5.708 10 C 0.142 3.858 11 H 0.096 0.904 12 C -0.164 4.164 13 C -0.126 4.126 14 C -0.119 4.119 15 C 0.059 3.941 16 N -0.671 5.671 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.199 0.801 33 H 0.407 0.593 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.025 0.975 43 H 0.348 0.652 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.974 9.452 -24.532 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.193 4.193 4 N -0.038 5.038 5 O 0.043 5.957 6 C -0.162 4.162 7 C 0.393 3.607 8 O -0.386 6.386 9 N -0.359 5.359 10 C 0.038 3.962 11 H 0.114 0.886 12 C -0.223 4.223 13 C -0.164 4.164 14 C -0.157 4.157 15 C -0.070 4.070 16 N -0.303 5.303 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.216 0.784 33 H 0.242 0.758 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.167 0.833 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.440 9.807 -23.889 29.111 hybrid contribution 1.185 0.300 0.314 1.262 sum -12.255 10.108 -23.575 28.428 Atomic orbital electron populations 1.20347 0.86244 1.04131 1.03669 1.21675 0.99113 0.90299 1.01145 1.25040 0.87681 1.02222 1.04407 1.73783 1.23105 0.91146 1.15781 1.84967 1.28104 1.15575 1.67013 1.24033 0.84790 0.96282 1.11139 1.16455 0.85761 0.81469 0.77048 1.90852 1.17153 1.80555 1.49997 1.46010 1.09720 1.06418 1.73776 1.21145 0.99352 0.78448 0.97260 0.88646 1.22192 1.02217 1.01954 0.95904 1.21890 0.97934 1.00459 0.96159 1.21579 0.99990 0.99979 0.94147 1.21972 0.96638 1.00077 0.88351 1.60057 1.46105 1.10898 1.13259 1.21666 0.92702 0.99154 0.94657 1.19840 0.84041 0.86012 0.87510 1.90522 1.46293 1.35410 1.74482 1.41876 1.31076 1.36708 1.10483 1.19759 1.16682 1.21027 0.85304 0.87876 1.25272 0.96002 0.96243 1.00540 1.69625 1.21005 1.26447 1.37289 0.85794 0.78153 0.78486 0.81879 1.19217 1.20745 1.20780 0.89935 0.90708 0.89165 0.78409 0.75760 0.91115 0.92035 0.92271 0.89694 0.91154 0.91971 0.90637 0.91134 0.95682 0.83256 0.89632 0.93957 0.77463 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 9.95 36.01 0.36 -0.21 16 2 C -0.12 -0.99 6.37 -103.99 -0.66 -1.65 16 3 C -0.02 -0.13 12.14 -17.13 -0.21 -0.33 16 4 N -0.34 -3.44 12.04 30.46 0.37 -3.07 16 5 O 0.12 1.13 11.04 15.53 0.17 1.30 16 6 C -0.10 -0.90 7.29 -36.32 -0.26 -1.17 16 7 C 0.61 5.81 7.78 -12.48 -0.10 5.71 16 8 O -0.51 -6.00 14.78 5.29 0.08 -5.92 16 9 N -0.71 -5.24 4.53 -54.86 -0.25 -5.49 16 10 C 0.14 1.00 2.57 -67.93 -0.17 0.82 16 11 H 0.10 0.82 7.58 -51.93 -0.39 0.43 16 12 C -0.16 -1.01 9.48 37.16 0.35 -0.65 16 13 C -0.13 -0.82 4.75 -26.73 -0.13 -0.94 16 14 C -0.12 -1.12 5.36 -26.73 -0.14 -1.26 16 15 C 0.06 0.68 5.69 -3.82 -0.02 0.66 16 16 N -0.67 -10.87 6.13 -115.05 -0.70 -11.57 16 17 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 18 C 0.44 10.57 7.82 -10.98 -0.09 10.48 16 19 O -0.58 -16.14 15.78 5.55 0.09 -16.05 16 20 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 23 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 24 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 25 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.70 6.74 -51.93 -0.35 0.35 16 32 H 0.20 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.41 2.40 8.43 -40.82 -0.34 2.06 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.35 5.86 8.43 -39.29 -0.33 5.53 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 47 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 402.12 15.07 6.06 6.06 Total: -1.00 -33.99 402.12 -7.04 -41.03 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -7.15 Total: 11.79 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.35 Total: 4.24 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.08 Total: -58.65 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: 0.34 Total: -20.67 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.99 -7.04 -41.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283262391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.647 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds