Wall clock time and date at job start Tue Mar 31 2020 21:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41261 * 128.07796 * 2 1 4 4 N 1.30126 * 106.59158 * 180.23518 * 3 2 1 5 5 O 1.20889 * 111.98299 * 359.78065 * 4 3 2 6 6 C 1.34648 * 111.46558 * 359.97438 * 5 4 3 7 7 C 1.47513 * 126.94061 * 179.97438 * 6 5 4 8 8 O 1.21587 * 119.99300 * 180.02562 * 7 6 5 9 9 N 1.34770 * 120.00235 * 0.03064 * 7 6 5 10 10 C 1.46500 * 119.99955 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47175 * 324.99716 * 10 9 7 12 12 C 1.53006 * 109.46998 * 84.99585 * 10 9 7 13 13 C 1.52997 * 109.47204 * 204.99611 * 10 9 7 14 14 C 1.52996 * 109.46894 * 64.99698 * 13 10 9 15 15 C 1.53008 * 109.47120 * 180.02562 * 14 13 10 16 16 N 1.46898 * 109.47197 * 180.02562 * 15 14 13 17 17 C 1.46897 * 110.99839 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.46976 * 179.97438 * 17 16 15 19 19 O 1.21286 * 120.00286 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99624 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99572 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00345 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00032 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99812 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00137 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47169 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47222 * 119.99870 * 25 23 21 28 28 H 1.48500 * 109.47203 * 239.99962 * 25 23 21 29 29 H 1.08998 * 109.47124 * 270.12736 * 1 2 3 30 30 H 1.09004 * 109.47190 * 30.12634 * 1 2 3 31 31 H 1.08998 * 109.47261 * 150.12455 * 1 2 3 32 32 H 1.08006 * 126.70868 * 359.97438 * 3 2 1 33 33 H 0.96997 * 119.99935 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47002 * 179.97438 * 12 10 9 35 35 H 1.08993 * 109.46955 * 300.00226 * 12 10 9 36 36 H 1.09000 * 109.47050 * 60.00054 * 12 10 9 37 37 H 1.08994 * 109.47510 * 185.00146 * 13 10 9 38 38 H 1.09001 * 109.47096 * 305.00009 * 13 10 9 39 39 H 1.08998 * 109.47867 * 299.99927 * 14 13 10 40 40 H 1.08993 * 109.47122 * 60.00537 * 14 13 10 41 41 H 1.09003 * 109.46865 * 299.99902 * 15 14 13 42 42 H 1.09001 * 109.47171 * 60.00127 * 15 14 13 43 43 H 1.00902 * 110.99925 * 303.94928 * 16 15 14 44 44 H 1.08996 * 109.47792 * 300.00055 * 17 16 15 45 45 H 1.09000 * 109.47221 * 60.00138 * 17 16 15 46 46 H 0.97000 * 120.00413 * 0.02562 * 20 18 17 47 47 H 0.96997 * 119.99328 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6353 -0.0051 5 8 3.5995 -0.5735 -0.0039 6 6 2.3508 -1.0771 0.0029 7 6 1.9695 -2.5021 0.0058 8 8 0.7952 -2.8171 0.0117 9 7 2.9228 -3.4547 0.0020 10 6 2.5441 -4.8699 0.0055 11 1 1.6400 -5.0027 0.5997 12 6 2.2835 -5.3316 -1.4298 13 6 3.6783 -5.6999 0.6102 14 6 3.8556 -5.3247 2.0828 15 6 4.9902 -6.1543 2.6874 16 7 5.1601 -5.7945 4.1015 17 6 6.2432 -6.5734 4.7164 18 6 6.3878 -6.1773 6.1633 19 8 5.6600 -5.3300 6.6358 20 7 7.3260 -6.7648 6.9321 21 6 7.4573 -6.4048 8.2485 22 1 6.8092 -5.6503 8.6693 23 6 8.4249 -7.0100 9.0411 24 7 9.2139 -7.9278 8.5290 25 14 8.6042 -6.5191 10.8345 26 1 7.6031 -5.4729 11.1638 27 1 8.3804 -7.7067 11.6975 28 1 9.9711 -5.9880 11.0680 29 1 -0.3633 0.0023 1.0276 30 1 -0.3634 0.8889 -0.5158 31 1 -0.3634 -0.8911 -0.5119 32 1 2.0948 2.1542 -0.0004 33 1 3.8596 -3.2034 -0.0030 34 1 2.0022 -6.3847 -1.4273 35 1 1.4755 -4.7403 -1.8606 36 1 3.1876 -5.1988 -2.0240 37 1 3.4348 -6.7594 0.5319 38 1 4.6035 -5.4989 0.0701 39 1 4.0991 -4.2652 2.1611 40 1 2.9305 -5.5258 2.6228 41 1 4.7471 -7.2139 2.6092 42 1 5.9153 -5.9528 2.1472 43 1 5.3224 -4.8040 4.2056 44 1 6.0086 -7.6358 4.6519 45 1 7.1772 -6.3749 4.1907 46 1 7.9084 -7.4422 6.5541 47 1 9.8896 -8.3500 9.0822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283262391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:38 Heat of formation + Delta-G solvation = -50.926761 kcal Electronic energy + Delta-G solvation = -28070.038733 eV Core-core repulsion = 23868.639260 eV Total energy + Delta-G solvation = -4201.399474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.08692 -40.97245 -40.16409 -38.12364 -36.76391 -35.90546 -35.70459 -33.94945 -33.32108 -33.01538 -31.41349 -29.25285 -28.64454 -26.68602 -25.48650 -24.72701 -23.59172 -22.40392 -21.86687 -21.63907 -21.04298 -19.91462 -19.71012 -18.86846 -17.86886 -17.52062 -17.02301 -16.88381 -16.51796 -16.08630 -16.01037 -15.76137 -15.56681 -15.21147 -15.12542 -14.85760 -14.33766 -14.22905 -14.18878 -14.08574 -13.99179 -13.63346 -13.52181 -13.26226 -13.06269 -12.97218 -12.75886 -12.42443 -12.38432 -12.32071 -12.15070 -12.09718 -11.69642 -11.58260 -11.52223 -11.45643 -11.33542 -10.62101 -10.36428 -10.16163 -10.02619 -9.29566 -8.47920 -5.96674 -0.31354 1.03394 1.35897 1.41216 1.51498 1.55558 1.86386 2.03951 2.18204 2.28620 2.93170 3.16334 3.19244 3.49700 3.55665 3.68000 3.82361 3.96370 4.07516 4.10147 4.28973 4.32140 4.37889 4.44739 4.51170 4.57965 4.66117 4.72429 4.73375 4.77501 4.84344 4.86444 4.90777 4.94116 5.08991 5.20964 5.26903 5.33259 5.39965 5.42342 5.48954 5.90736 6.13631 6.25516 6.42324 6.59231 6.88209 7.00480 7.11629 7.55088 8.10675 8.69673 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.001795 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.547204 B =15598.310843 C =16916.268815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.122 4.122 3 C -0.006 4.006 4 N -0.366 5.366 5 O 0.108 5.892 6 C -0.111 4.111 7 C 0.607 3.393 8 O -0.538 6.538 9 N -0.698 5.698 10 C 0.142 3.858 11 H 0.077 0.923 12 C -0.158 4.158 13 C -0.114 4.114 14 C -0.113 4.113 15 C 0.060 3.940 16 N -0.690 5.690 17 C 0.066 3.934 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.919 5.919 25 Si 0.994 3.006 26 H -0.275 1.275 27 H -0.270 1.270 28 H -0.270 1.270 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.232 0.768 33 H 0.415 0.585 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.341 0.659 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.483 9.268 -25.612 29.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 C -0.183 4.183 4 N -0.067 5.067 5 O 0.037 5.963 6 C -0.176 4.176 7 C 0.391 3.609 8 O -0.416 6.416 9 N -0.349 5.349 10 C 0.039 3.961 11 H 0.095 0.905 12 C -0.216 4.216 13 C -0.152 4.152 14 C -0.151 4.151 15 C -0.068 4.068 16 N -0.323 5.323 17 C -0.067 4.067 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.095 0.905 23 C -0.214 4.214 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.195 1.195 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.248 0.752 33 H 0.252 0.748 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.159 0.841 44 H 0.123 0.877 45 H 0.085 0.915 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.911 9.570 -25.004 29.723 hybrid contribution 0.993 0.378 0.614 1.227 sum -11.917 9.948 -24.390 28.911 Atomic orbital electron populations 1.20388 0.85058 1.04734 1.03934 1.22040 1.00016 0.90249 1.00409 1.25584 0.86719 1.03544 1.02493 1.73762 1.24380 0.91384 1.17184 1.84939 1.28177 1.15592 1.67619 1.24138 0.85138 0.96513 1.11829 1.16543 0.85653 0.81870 0.76834 1.90834 1.18221 1.81001 1.51572 1.46013 1.09867 1.06418 1.72648 1.21163 0.98948 0.78209 0.97828 0.90524 1.22136 1.02190 1.02377 0.94940 1.21813 0.98441 1.01005 0.93933 1.21510 0.98339 0.99438 0.95821 1.22088 0.98055 1.00854 0.85801 1.60082 1.45525 1.10312 1.16344 1.21531 0.94617 1.00177 0.90335 1.20975 0.82367 0.84576 0.89796 1.90488 1.47565 1.37116 1.76060 1.41943 1.31829 1.37185 1.10078 1.19696 1.17711 1.21918 0.87049 0.90473 1.26055 0.95109 0.95834 1.04352 1.69678 1.21041 1.26552 1.38760 0.84863 0.78260 0.78249 0.76907 1.19920 1.19537 1.19475 0.89742 0.88036 0.90590 0.75191 0.74791 0.89819 0.93653 0.91080 0.88271 0.89268 0.92491 0.92551 0.90206 0.93820 0.84053 0.87747 0.91486 0.76893 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.95 71.24 0.71 -0.33 16 2 C -0.12 -1.98 6.37 -19.45 -0.12 -2.11 16 3 C -0.01 -0.09 12.14 85.69 1.04 0.95 16 4 N -0.37 -7.24 12.04 -58.55 -0.71 -7.95 16 5 O 0.11 2.09 11.04 65.76 0.73 2.82 16 6 C -0.11 -2.07 7.29 24.39 0.18 -1.90 16 7 C 0.61 11.80 7.78 86.69 0.67 12.48 16 8 O -0.54 -13.11 14.78 -3.99 -0.06 -13.17 16 9 N -0.70 -10.07 4.53 -445.73 -2.02 -12.09 16 10 C 0.14 1.87 2.57 44.99 0.12 1.98 16 11 H 0.08 1.33 7.58 -2.39 -0.02 1.32 16 12 C -0.16 -1.71 9.48 71.98 0.68 -1.03 16 13 C -0.11 -1.22 4.75 30.59 0.15 -1.07 16 14 C -0.11 -1.99 5.36 30.60 0.16 -1.82 16 15 C 0.06 1.25 5.69 86.31 0.49 1.74 16 16 N -0.69 -21.70 6.13 -517.92 -3.17 -24.87 16 17 C 0.07 2.25 6.17 85.56 0.53 2.78 16 18 C 0.44 21.08 7.82 87.66 0.69 21.76 16 19 O -0.63 -35.57 15.78 -3.05 -0.05 -35.62 16 20 N -0.57 -29.77 5.29 -306.98 -1.62 -31.40 16 21 C -0.33 -19.25 9.68 84.04 0.81 -18.44 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 24 N -0.92 -49.76 13.05 21.66 0.28 -49.48 16 25 Si 0.99 43.32 29.55 68.60 2.03 45.34 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.08 1.19 6.74 -2.39 -0.02 1.17 16 32 H 0.23 1.49 8.06 -2.91 -0.02 1.46 16 33 H 0.42 4.58 8.43 -92.71 -0.78 3.80 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 1.06 7.75 -2.39 -0.02 1.04 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.34 11.44 8.43 -89.69 -0.76 10.68 16 44 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 47 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -75.08 402.12 0.73 -74.34 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -1.25 Total: 37.34 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.57 Total: 14.72 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -7.24 Total: -125.78 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: 0.62 Total: -45.97 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -75.08 0.73 -74.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283262391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.416 kcal (2) G-P(sol) polarization free energy of solvation -75.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds