Wall clock time and date at job start Tue Mar 31 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46729 * 2 1 4 4 C 1.35319 * 126.66791 * 90.32642 * 3 2 1 5 5 C 1.42267 * 103.92401 * 180.02562 * 4 3 2 6 6 C 1.48330 * 126.93993 * 179.88429 * 5 4 3 7 7 O 1.21495 * 119.99660 * 6.11646 * 6 5 4 8 8 N 1.34773 * 120.00278 * 186.11391 * 6 5 4 9 9 C 1.46508 * 119.99946 * 5.00529 * 8 6 5 10 10 C 1.46498 * 120.00323 * 185.00529 * 8 6 5 11 11 C 1.53001 * 109.47142 * 270.00188 * 10 8 6 12 12 H 1.09000 * 109.47133 * 294.99917 * 11 10 8 13 13 C 1.52993 * 109.47315 * 174.99881 * 11 10 8 14 14 N 1.46900 * 109.47300 * 54.99606 * 11 10 8 15 15 C 1.46900 * 111.00256 * 205.00035 * 14 11 10 16 16 C 1.50697 * 109.46986 * 179.97438 * 15 14 11 17 17 O 1.21293 * 120.00320 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99859 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00259 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99349 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00192 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99931 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00045 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47041 * 90.00132 * 23 21 19 25 25 H 1.48497 * 109.46906 * 209.99986 * 23 21 19 26 26 H 1.48496 * 109.47092 * 330.00221 * 23 21 19 27 27 N 1.30986 * 106.12137 * 359.61926 * 5 4 3 28 28 O 1.20904 * 111.44136 * 0.24497 * 27 5 4 29 29 H 1.09002 * 109.47142 * 300.00143 * 1 2 3 30 30 H 1.09004 * 109.46780 * 60.00289 * 1 2 3 31 31 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46988 * 239.99912 * 2 1 3 33 33 H 1.09004 * 109.46780 * 119.99711 * 2 1 3 34 34 H 1.07999 * 128.03642 * 359.93486 * 4 3 2 35 35 H 1.08997 * 109.46929 * 275.30963 * 9 8 6 36 36 H 1.09002 * 109.46613 * 35.30796 * 9 8 6 37 37 H 1.08997 * 109.47183 * 155.30326 * 9 8 6 38 38 H 1.09004 * 109.47157 * 150.00243 * 10 8 6 39 39 H 1.08998 * 109.47154 * 29.99895 * 10 8 6 40 40 H 1.09000 * 109.47049 * 300.00087 * 13 11 10 41 41 H 1.09003 * 109.47395 * 179.97438 * 13 11 10 42 42 H 1.09003 * 109.47524 * 60.00068 * 13 11 10 43 43 H 1.00901 * 110.99781 * 328.95809 * 14 11 10 44 44 H 1.08992 * 109.47173 * 300.00290 * 15 14 11 45 45 H 1.09003 * 109.47089 * 60.00276 * 15 14 11 46 46 H 0.97000 * 120.00222 * 0.02562 * 18 16 15 47 47 H 0.97001 * 119.99619 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3074 2.1807 1.0854 5 6 2.7412 3.4190 0.5354 6 6 3.1694 4.6257 1.2841 7 8 3.2786 4.5832 2.4934 8 7 3.4375 5.7691 0.6230 9 6 3.2012 5.8534 -0.8204 10 6 3.9651 6.9278 1.3477 11 6 2.8035 7.7894 1.8470 12 1 2.2653 8.2032 0.9942 13 6 3.3482 8.9302 2.7086 14 7 1.8904 6.9635 2.6482 15 6 0.5338 7.5270 2.6483 16 6 -0.3725 6.6545 3.4779 17 8 0.0683 5.6611 4.0166 18 7 -1.6728 6.9784 3.6222 19 6 -2.4973 6.1849 4.3774 20 1 -2.1048 5.3000 4.8563 21 6 -3.8379 6.5186 4.5257 22 7 -4.6283 5.7578 5.2492 23 14 -4.5168 8.0488 3.6968 24 1 -5.0104 7.6994 2.3405 25 1 -5.6363 8.5945 4.5056 26 1 -3.4434 9.0689 3.5853 27 7 2.6914 3.2763 -0.7657 28 8 2.3006 2.1748 -1.0750 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2172 1.9104 2.1271 35 1 4.0662 5.4593 -1.3538 36 1 2.3179 5.2691 -1.0786 37 1 3.0435 6.8943 -1.1026 38 1 4.5945 7.5175 0.6811 39 1 4.5559 6.5866 2.1977 40 1 3.8864 8.5164 3.5614 41 1 2.5207 9.5443 3.0640 42 1 4.0257 9.5431 2.1141 43 1 1.8854 6.0089 2.3215 44 1 0.5577 8.5316 3.0704 45 1 0.1586 7.5713 1.6258 46 1 -2.0254 7.7730 3.1918 47 1 -5.5641 5.9910 5.3530 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283701310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:41 Heat of formation + Delta-G solvation = 12.977063 kcal Electronic energy + Delta-G solvation = -30195.219685 eV Core-core repulsion = 25996.591289 eV Total energy + Delta-G solvation = -4198.628396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.20197 -40.27920 -38.35466 -36.76963 -35.26711 -35.04827 -33.95353 -33.71519 -31.63116 -31.03433 -30.31696 -27.69626 -26.75104 -26.45707 -24.43417 -24.05892 -23.57274 -22.34159 -20.45436 -19.47806 -19.19111 -18.29615 -17.94725 -17.48597 -16.98941 -16.58456 -16.27450 -15.57692 -15.18864 -14.85154 -14.80389 -14.64012 -14.39128 -13.90778 -13.67718 -13.57757 -13.32480 -13.12801 -12.90691 -12.84437 -12.77244 -12.58883 -12.14588 -12.09263 -12.03519 -11.92323 -11.70039 -11.51255 -11.47011 -11.22304 -11.17442 -10.92569 -10.55871 -10.53355 -10.24773 -9.92306 -9.58067 -9.50796 -8.88188 -8.44872 -8.11981 -7.97928 -6.25723 -3.76358 0.97107 1.56606 2.56161 2.81889 3.04893 3.06176 3.09522 3.17411 3.74225 3.83002 4.13504 4.15973 4.24295 4.69268 4.78786 4.81251 4.86909 4.89363 4.90991 4.94334 5.12366 5.18995 5.21261 5.27434 5.33042 5.39571 5.41371 5.55358 5.60800 5.66639 5.70457 5.70919 5.76424 5.81684 5.91524 5.98018 5.99437 6.00894 6.20425 6.39131 7.00975 7.28158 7.65180 7.73014 7.82822 8.00511 8.21239 8.67147 9.01634 9.48961 9.91604 10.87737 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008432 B = 0.003857 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.763802 B = 7256.882272 C = 9692.583723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.041 4.041 3 C -0.031 4.031 4 C -0.174 4.174 5 C -0.019 4.019 6 C 0.586 3.414 7 O -0.481 6.481 8 N -0.613 5.613 9 C 0.079 3.921 10 C 0.115 3.885 11 C 0.065 3.935 12 H 0.041 0.959 13 C -0.138 4.138 14 N -0.658 5.658 15 C 0.046 3.954 16 C 0.450 3.550 17 O -0.555 6.555 18 N -0.594 5.594 19 C -0.301 4.301 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.884 5.884 23 Si 0.879 3.121 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.270 1.270 27 N -0.334 5.334 28 O 0.114 5.886 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.183 0.817 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.355 0.645 44 H 0.086 0.914 45 H 0.037 0.963 46 H 0.369 0.631 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.913 -2.940 -17.016 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.079 4.079 3 C -0.094 4.094 4 C -0.197 4.197 5 C -0.178 4.178 6 C 0.371 3.629 7 O -0.351 6.351 8 N -0.348 5.348 9 C -0.064 4.064 10 C -0.008 4.008 11 C -0.046 4.046 12 H 0.058 0.942 13 C -0.196 4.196 14 N -0.298 5.298 15 C -0.087 4.087 16 C 0.236 3.764 17 O -0.436 6.436 18 N -0.235 5.235 19 C -0.430 4.430 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.524 5.524 23 Si 0.705 3.295 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.195 1.195 27 N -0.037 5.037 28 O 0.041 5.959 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.200 0.800 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.180 0.820 44 H 0.104 0.896 45 H 0.055 0.945 46 H 0.202 0.798 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.558 -2.576 -16.288 23.368 hybrid contribution -1.289 0.883 -0.841 1.774 sum 15.269 -1.693 -17.128 23.009 Atomic orbital electron populations 1.21838 0.93086 1.02955 1.03409 1.20166 0.96980 0.85892 1.04841 1.24517 1.02291 0.97273 0.85271 1.22521 1.03900 0.91385 1.01860 1.23417 1.06360 0.97842 0.90141 1.17069 0.78120 0.81204 0.86461 1.90956 1.49470 1.82869 1.11809 1.47763 1.65202 1.12270 1.09568 1.21981 1.02560 1.02631 0.79193 1.21846 0.95913 0.85718 0.97289 1.21956 0.93868 0.94391 0.94385 0.94157 1.21746 1.00970 0.96823 1.00069 1.60236 1.06207 1.06619 1.56720 1.21773 0.89682 0.99250 0.97966 1.19753 0.82536 0.88048 0.86094 1.90597 1.74493 1.28175 1.50287 1.42212 1.08560 1.25276 1.47422 1.19436 0.89926 1.07782 1.25879 0.86333 1.25012 0.95865 0.97915 0.97398 1.69626 1.05927 1.37920 1.38974 0.86684 0.79587 0.83107 0.80099 1.19769 1.20182 1.19516 1.74294 1.14807 0.99126 1.15467 1.84742 1.60036 1.17449 1.33692 0.91457 0.92025 0.91087 0.89265 0.88165 0.79963 0.92045 0.90193 0.90898 0.89468 0.88594 0.91485 0.92268 0.92790 0.81973 0.89589 0.94514 0.79833 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.04 -0.28 6.50 -27.88 -0.18 -0.46 16 3 C -0.03 -0.32 6.73 -35.35 -0.24 -0.56 16 4 C -0.17 -2.29 10.93 -39.08 -0.43 -2.71 16 5 C -0.02 -0.28 6.80 -82.53 -0.56 -0.84 16 6 C 0.59 9.37 6.24 -12.11 -0.08 9.29 16 7 O -0.48 -9.38 14.84 5.37 0.08 -9.30 16 8 N -0.61 -7.87 2.66 -182.51 -0.49 -8.36 16 9 C 0.08 0.79 9.34 59.85 0.56 1.35 16 10 C 0.11 1.33 5.16 -4.04 -0.02 1.31 16 11 C 0.07 0.86 2.95 -67.72 -0.20 0.66 16 12 H 0.04 0.49 7.80 -51.93 -0.40 0.09 16 13 C -0.14 -1.58 9.41 37.15 0.35 -1.23 16 14 N -0.66 -12.12 5.76 -108.00 -0.62 -12.75 16 15 C 0.05 0.88 5.97 -4.98 -0.03 0.85 16 16 C 0.45 11.16 7.82 -10.99 -0.09 11.07 16 17 O -0.55 -16.20 15.78 5.55 0.09 -16.12 16 18 N -0.59 -15.01 5.09 -10.96 -0.06 -15.07 16 19 C -0.30 -8.86 10.16 -14.93 -0.15 -9.02 16 20 H 0.12 3.98 7.39 -52.48 -0.39 3.59 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -26.41 13.96 55.50 0.77 -25.63 16 23 Si 0.88 19.97 27.74 -169.99 -4.71 15.26 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -5.64 6.52 56.52 0.37 -5.27 16 27 N -0.33 -4.28 8.96 33.29 0.30 -3.98 16 28 O 0.11 1.31 11.18 17.25 0.19 1.50 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.18 2.34 8.06 -52.49 -0.42 1.92 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.91 5.95 -51.93 -0.31 0.60 16 37 H 0.07 0.57 8.03 -51.93 -0.42 0.16 16 38 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 39 H 0.10 1.25 7.50 -51.93 -0.39 0.86 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.35 7.18 4.02 -39.29 -0.16 7.02 16 44 H 0.09 1.45 7.44 -51.93 -0.39 1.06 16 45 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 46 H 0.37 8.20 5.76 -40.82 -0.24 7.97 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -36.91 389.05 -6.26 -43.17 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -6.88 Total: 15.44 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -0.79 Total: 9.97 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -0.09 Total: -65.78 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.36 Total: -23.91 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.71 Total: 15.26 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.91 -6.26 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283701310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.149 kcal (2) G-P(sol) polarization free energy of solvation -36.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds