Wall clock time and date at job start Tue Mar 31 2020 22:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46729 * 2 1 4 4 C 1.35319 * 126.66791 * 90.32642 * 3 2 1 5 5 C 1.42267 * 103.92401 * 180.02562 * 4 3 2 6 6 C 1.48330 * 126.93993 * 179.88429 * 5 4 3 7 7 O 1.21495 * 119.99660 * 6.11646 * 6 5 4 8 8 N 1.34773 * 120.00278 * 186.11391 * 6 5 4 9 9 C 1.46508 * 119.99946 * 5.00529 * 8 6 5 10 10 C 1.46498 * 120.00323 * 185.00529 * 8 6 5 11 11 C 1.53001 * 109.47142 * 270.00188 * 10 8 6 12 12 H 1.09000 * 109.47133 * 294.99917 * 11 10 8 13 13 C 1.52993 * 109.47315 * 174.99881 * 11 10 8 14 14 N 1.46900 * 109.47300 * 54.99606 * 11 10 8 15 15 C 1.46900 * 111.00256 * 205.00035 * 14 11 10 16 16 C 1.50697 * 109.46986 * 179.97438 * 15 14 11 17 17 O 1.21293 * 120.00320 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99859 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00259 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99349 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00192 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99931 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00045 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47041 * 90.00132 * 23 21 19 25 25 H 1.48497 * 109.46906 * 209.99986 * 23 21 19 26 26 H 1.48496 * 109.47092 * 330.00221 * 23 21 19 27 27 N 1.30986 * 106.12137 * 359.61926 * 5 4 3 28 28 O 1.20904 * 111.44136 * 0.24497 * 27 5 4 29 29 H 1.09002 * 109.47142 * 300.00143 * 1 2 3 30 30 H 1.09004 * 109.46780 * 60.00289 * 1 2 3 31 31 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46988 * 239.99912 * 2 1 3 33 33 H 1.09004 * 109.46780 * 119.99711 * 2 1 3 34 34 H 1.07999 * 128.03642 * 359.93486 * 4 3 2 35 35 H 1.08997 * 109.46929 * 275.30963 * 9 8 6 36 36 H 1.09002 * 109.46613 * 35.30796 * 9 8 6 37 37 H 1.08997 * 109.47183 * 155.30326 * 9 8 6 38 38 H 1.09004 * 109.47157 * 150.00243 * 10 8 6 39 39 H 1.08998 * 109.47154 * 29.99895 * 10 8 6 40 40 H 1.09000 * 109.47049 * 300.00087 * 13 11 10 41 41 H 1.09003 * 109.47395 * 179.97438 * 13 11 10 42 42 H 1.09003 * 109.47524 * 60.00068 * 13 11 10 43 43 H 1.00901 * 110.99781 * 328.95809 * 14 11 10 44 44 H 1.08992 * 109.47173 * 300.00290 * 15 14 11 45 45 H 1.09003 * 109.47089 * 60.00276 * 15 14 11 46 46 H 0.97000 * 120.00222 * 0.02562 * 18 16 15 47 47 H 0.97001 * 119.99619 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3074 2.1807 1.0854 5 6 2.7412 3.4190 0.5354 6 6 3.1694 4.6257 1.2841 7 8 3.2786 4.5832 2.4934 8 7 3.4375 5.7691 0.6230 9 6 3.2012 5.8534 -0.8204 10 6 3.9651 6.9278 1.3477 11 6 2.8035 7.7894 1.8470 12 1 2.2653 8.2032 0.9942 13 6 3.3482 8.9302 2.7086 14 7 1.8904 6.9635 2.6482 15 6 0.5338 7.5270 2.6483 16 6 -0.3725 6.6545 3.4779 17 8 0.0683 5.6611 4.0166 18 7 -1.6728 6.9784 3.6222 19 6 -2.4973 6.1849 4.3774 20 1 -2.1048 5.3000 4.8563 21 6 -3.8379 6.5186 4.5257 22 7 -4.6283 5.7578 5.2492 23 14 -4.5168 8.0488 3.6968 24 1 -5.0104 7.6994 2.3405 25 1 -5.6363 8.5945 4.5056 26 1 -3.4434 9.0689 3.5853 27 7 2.6914 3.2763 -0.7657 28 8 2.3006 2.1748 -1.0750 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2172 1.9104 2.1271 35 1 4.0662 5.4593 -1.3538 36 1 2.3179 5.2691 -1.0786 37 1 3.0435 6.8943 -1.1026 38 1 4.5945 7.5175 0.6811 39 1 4.5559 6.5866 2.1977 40 1 3.8864 8.5164 3.5614 41 1 2.5207 9.5443 3.0640 42 1 4.0257 9.5431 2.1141 43 1 1.8854 6.0089 2.3215 44 1 0.5577 8.5316 3.0704 45 1 0.1586 7.5713 1.6258 46 1 -2.0254 7.7730 3.1918 47 1 -5.5641 5.9910 5.3530 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283701310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:40 Heat of formation + Delta-G solvation = -15.636686 kcal Electronic energy + Delta-G solvation = -30196.460470 eV Core-core repulsion = 25996.591289 eV Total energy + Delta-G solvation = -4199.869181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.19866 -41.41773 -40.27956 -38.00542 -36.43579 -35.95534 -35.87521 -34.81343 -33.79502 -32.29008 -31.18246 -28.58352 -28.20174 -27.74883 -25.69754 -25.16531 -24.81640 -23.27767 -21.49764 -21.37409 -20.50339 -20.14779 -18.94907 -18.47226 -18.07402 -18.00778 -17.42014 -17.19598 -16.71430 -16.41733 -16.01459 -15.50289 -15.45830 -15.40356 -14.90887 -14.88062 -14.45341 -14.43808 -14.41973 -14.18634 -13.70553 -13.67171 -13.55407 -13.42101 -13.05100 -12.96541 -12.83654 -12.62928 -12.54630 -12.45135 -12.32717 -12.02508 -12.00168 -11.89635 -11.60465 -11.55796 -11.44946 -10.50043 -10.47786 -10.28783 -9.89042 -9.31183 -8.44424 -6.05685 -0.05681 0.57213 1.26903 1.31861 1.41599 1.57527 1.89590 1.90540 1.93951 2.19925 2.67883 2.72080 3.10970 3.30684 3.39162 3.82019 3.86364 3.92268 4.04757 4.09771 4.12403 4.18810 4.29321 4.29795 4.37183 4.38919 4.44396 4.48117 4.56569 4.66170 4.79073 4.84384 4.90457 4.93634 5.00670 5.04506 5.08796 5.27889 5.35438 5.47638 5.50002 5.87424 5.96300 6.10144 6.39259 6.56530 6.73720 6.83906 6.93942 7.34483 7.92123 8.73482 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008432 B = 0.003857 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.763802 B = 7256.882272 C = 9692.583723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.038 4.038 3 C -0.006 4.006 4 C -0.209 4.209 5 C -0.044 4.044 6 C 0.577 3.423 7 O -0.533 6.533 8 N -0.605 5.605 9 C 0.077 3.923 10 C 0.113 3.887 11 C 0.063 3.937 12 H 0.064 0.936 13 C -0.133 4.133 14 N -0.687 5.687 15 C 0.060 3.940 16 C 0.443 3.557 17 O -0.611 6.611 18 N -0.589 5.589 19 C -0.331 4.331 20 H 0.052 0.948 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.966 3.034 24 H -0.255 1.255 25 H -0.271 1.271 26 H -0.234 1.234 27 N -0.328 5.328 28 O 0.124 5.876 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.173 0.827 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.342 0.658 44 H 0.115 0.885 45 H 0.067 0.933 46 H 0.389 0.611 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.185 -0.133 -20.753 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.076 4.076 3 C -0.069 4.069 4 C -0.232 4.232 5 C -0.202 4.202 6 C 0.364 3.636 7 O -0.408 6.408 8 N -0.338 5.338 9 C -0.064 4.064 10 C -0.008 4.008 11 C -0.047 4.047 12 H 0.082 0.918 13 C -0.192 4.192 14 N -0.326 5.326 15 C -0.073 4.073 16 C 0.231 3.769 17 O -0.494 6.494 18 N -0.231 5.231 19 C -0.460 4.460 20 H 0.070 0.930 21 C -0.212 4.212 22 N -0.573 5.573 23 Si 0.785 3.215 24 H -0.180 1.180 25 H -0.196 1.196 26 H -0.157 1.157 27 N -0.030 5.030 28 O 0.049 5.951 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.190 0.810 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.153 0.847 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.166 0.834 44 H 0.133 0.867 45 H 0.085 0.915 46 H 0.225 0.775 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.858 0.288 -20.075 26.216 hybrid contribution -1.351 -0.137 0.338 1.399 sum 15.508 0.151 -19.736 25.100 Atomic orbital electron populations 1.21845 0.93509 1.04013 1.01936 1.20425 0.96353 0.83639 1.07179 1.25058 0.99912 0.98071 0.83901 1.22624 1.06033 0.92134 1.02392 1.23449 1.07756 0.98051 0.90901 1.17387 0.77756 0.82390 0.86090 1.90916 1.52085 1.83857 1.13922 1.47898 1.63719 1.11520 1.10689 1.22161 1.02461 1.04500 0.77325 1.22020 0.95673 0.85436 0.97694 1.22168 0.93406 0.94309 0.94825 0.91814 1.21738 1.01283 0.96367 0.99762 1.60268 1.06540 1.06792 1.59043 1.21703 0.88853 0.98557 0.98146 1.21014 0.82778 0.87810 0.85333 1.90576 1.75555 1.30875 1.52436 1.42009 1.08499 1.25462 1.47134 1.18997 0.91553 1.07469 1.27982 0.93023 1.26116 0.95221 1.02359 0.97461 1.69807 1.06720 1.40535 1.40245 0.85357 0.79429 0.77695 0.78989 1.17968 1.19589 1.15708 1.74279 1.14696 0.99614 1.14384 1.84721 1.59398 1.17188 1.33819 0.94149 0.92268 0.88786 0.86090 0.86617 0.80995 0.90743 0.91708 0.87713 0.84720 0.90800 0.93425 0.92663 0.89008 0.83441 0.86741 0.91531 0.77518 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.89 71.98 0.71 -1.54 16 2 C -0.04 -0.47 6.50 29.85 0.19 -0.28 16 3 C -0.01 -0.13 6.73 25.01 0.17 0.03 16 4 C -0.21 -5.91 10.93 22.60 0.25 -5.67 16 5 C -0.04 -1.34 6.80 42.96 0.29 -1.04 16 6 C 0.58 19.33 6.24 86.93 0.54 19.87 16 7 O -0.53 -22.53 14.84 -3.70 -0.05 -22.58 16 8 N -0.60 -14.98 2.66 -849.63 -2.26 -17.24 16 9 C 0.08 1.36 9.34 127.77 1.19 2.55 16 10 C 0.11 2.41 5.16 86.38 0.45 2.86 16 11 C 0.06 1.50 2.95 44.91 0.13 1.63 16 12 H 0.06 1.26 7.80 -2.39 -0.02 1.24 16 13 C -0.13 -2.68 9.41 71.98 0.68 -2.00 16 14 N -0.69 -25.11 5.76 -495.60 -2.85 -27.96 16 15 C 0.06 2.17 5.97 85.56 0.51 2.68 16 16 C 0.44 22.47 7.82 87.66 0.69 23.15 16 17 O -0.61 -38.05 15.78 -3.07 -0.05 -38.10 16 18 N -0.59 -29.96 5.09 -306.98 -1.56 -31.52 16 19 C -0.33 -20.40 10.16 84.04 0.85 -19.55 16 20 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.93 -57.57 13.96 21.66 0.30 -57.27 16 23 Si 0.97 40.00 27.74 68.60 1.90 41.90 16 24 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 26 H -0.23 -8.28 6.52 99.48 0.65 -7.63 16 27 N -0.33 -8.36 8.96 -49.51 -0.44 -8.81 16 28 O 0.12 2.76 11.18 71.88 0.80 3.56 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.17 5.08 8.06 -2.91 -0.02 5.05 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.38 5.95 -2.39 -0.01 1.36 16 37 H 0.10 1.19 8.03 -2.39 -0.02 1.17 16 38 H 0.13 1.58 8.07 -2.38 -0.02 1.56 16 39 H 0.07 1.93 7.50 -2.39 -0.02 1.91 16 40 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 1.15 7.45 -2.39 -0.02 1.13 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.34 14.24 4.02 -89.69 -0.36 13.88 16 44 H 0.11 3.49 7.44 -2.39 -0.02 3.48 16 45 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 46 H 0.39 16.39 5.76 -92.71 -0.53 15.85 16 47 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -90.52 389.05 2.96 -87.56 By element: Atomic # 1 Polarization: 47.97 SS G_CDS: 0.05 Total: 48.02 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 7.12 Total: 22.44 kcal Atomic # 7 Polarization: -135.99 SS G_CDS: -6.82 Total: -142.80 kcal Atomic # 8 Polarization: -57.82 SS G_CDS: 0.70 Total: -57.12 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.90 Total: 41.90 kcal Total: -90.52 2.96 -87.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283701310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.921 kcal (2) G-P(sol) polarization free energy of solvation -90.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds