Wall clock time and date at job start Tue Mar 31 2020 22:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47105 * 2 1 4 4 C 1.35319 * 126.66294 * 90.28852 * 3 2 1 5 5 C 1.42271 * 103.91917 * 180.09147 * 4 3 2 6 6 C 1.48328 * 126.94014 * 179.91312 * 5 4 3 7 7 O 1.21499 * 119.99534 * 5.54952 * 6 5 4 8 8 N 1.34773 * 120.00187 * 185.55365 * 6 5 4 9 9 C 1.46491 * 120.00072 * 356.46508 * 8 6 5 10 10 C 1.46502 * 119.99860 * 176.46205 * 8 6 5 11 11 C 1.53004 * 109.47211 * 90.00039 * 10 8 6 12 12 H 1.09001 * 109.46858 * 65.00087 * 11 10 8 13 13 C 1.52992 * 109.47090 * 185.00047 * 11 10 8 14 14 N 1.46895 * 109.46899 * 305.00097 * 11 10 8 15 15 C 1.46900 * 110.99982 * 155.00097 * 14 11 10 16 16 C 1.50703 * 109.47156 * 179.97438 * 15 14 11 17 17 O 1.21285 * 120.00014 * 0.02562 * 16 15 14 18 18 N 1.34784 * 120.00017 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99792 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00264 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99301 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00619 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99689 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47109 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47195 * 119.99634 * 23 21 19 26 26 H 1.48501 * 109.47342 * 240.00143 * 23 21 19 27 27 N 1.30981 * 106.12260 * 359.64487 * 5 4 3 28 28 O 1.20907 * 111.44168 * 0.22598 * 27 5 4 29 29 H 1.08991 * 109.46931 * 60.00072 * 1 2 3 30 30 H 1.08999 * 109.46993 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46825 * 299.99439 * 1 2 3 32 32 H 1.08998 * 109.47093 * 240.00113 * 2 1 3 33 33 H 1.09000 * 109.47465 * 120.00070 * 2 1 3 34 34 H 1.07997 * 128.03775 * 359.96449 * 4 3 2 35 35 H 1.09006 * 109.47334 * 275.55348 * 9 8 6 36 36 H 1.08994 * 109.47446 * 35.55174 * 9 8 6 37 37 H 1.08998 * 109.47348 * 155.55612 * 9 8 6 38 38 H 1.08995 * 109.47049 * 210.00396 * 10 8 6 39 39 H 1.09004 * 109.47082 * 330.00161 * 10 8 6 40 40 H 1.08997 * 109.47757 * 59.99757 * 13 11 10 41 41 H 1.09004 * 109.47413 * 180.02562 * 13 11 10 42 42 H 1.09008 * 109.47125 * 299.99910 * 13 11 10 43 43 H 1.00907 * 111.00632 * 31.04246 * 14 11 10 44 44 H 1.09001 * 109.47107 * 299.99706 * 15 14 11 45 45 H 1.08994 * 109.47398 * 59.99855 * 15 14 11 46 46 H 0.97004 * 119.99620 * 0.02562 * 18 16 15 47 47 H 0.97003 * 120.00080 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3068 2.1808 1.0855 5 6 2.7395 3.4195 0.5354 6 6 3.1673 4.6264 1.2842 7 8 3.2671 4.5867 2.4944 8 7 3.4452 5.7669 0.6221 9 6 3.3999 5.7936 -0.8419 10 6 3.7924 6.9800 1.3664 11 6 5.3071 7.0339 1.5759 12 1 5.8039 7.1355 0.6110 13 6 5.6575 8.2332 2.4587 14 7 5.7553 5.7971 2.2295 15 6 7.1674 5.5251 1.9297 16 6 7.5905 4.2520 2.6163 17 8 6.7940 3.6320 3.2887 18 7 8.8539 3.8018 2.4822 19 6 9.2389 2.6439 3.1072 20 1 8.5299 2.0923 3.7066 21 6 10.5414 2.1802 2.9693 22 7 11.4041 2.8511 2.2395 23 14 11.0660 0.6022 3.8203 24 1 9.9162 0.0404 4.5739 25 1 11.5189 -0.3813 2.8040 26 1 12.1794 0.8925 4.7590 27 7 2.6894 3.2771 -0.7656 28 8 2.2995 2.1752 -1.0749 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2163 1.9106 2.1271 35 1 4.3516 5.4428 -1.2413 36 1 2.5975 5.1447 -1.1925 37 1 3.2173 6.8132 -1.1813 38 1 3.4721 7.8562 0.8029 39 1 3.2920 6.9679 2.3347 40 1 5.1608 8.1317 3.4236 41 1 6.7367 8.2719 2.6076 42 1 5.3249 9.1510 1.9736 43 1 5.1727 5.0167 1.9653 44 1 7.2960 5.4175 0.8527 45 1 7.7807 6.3518 2.2880 46 1 9.4908 4.2975 1.9441 47 1 12.3135 2.5275 2.1436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283701315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:43 Heat of formation + Delta-G solvation = -19.547326 kcal Electronic energy + Delta-G solvation = -30042.824919 eV Core-core repulsion = 25842.786160 eV Total energy + Delta-G solvation = -4200.038759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.19807 -41.40827 -40.15212 -37.99932 -36.43622 -35.92982 -35.86364 -34.81175 -33.34675 -32.24505 -31.17247 -28.58067 -28.08436 -27.75904 -25.89229 -25.16077 -24.83036 -23.27494 -21.53173 -21.22351 -20.32964 -19.95417 -18.97707 -18.47412 -18.09258 -18.00938 -17.41911 -17.16163 -16.55185 -16.41593 -16.05596 -15.67274 -15.45040 -15.41323 -14.99336 -14.89030 -14.47219 -14.36281 -14.28144 -13.79464 -13.72575 -13.53588 -13.53012 -13.41475 -13.05946 -12.92760 -12.77328 -12.62875 -12.52403 -12.43767 -12.23568 -12.13785 -12.04410 -11.87230 -11.60583 -11.56338 -11.44120 -10.49714 -10.40570 -10.06570 -9.90431 -9.33580 -8.50851 -6.00304 -0.05193 0.58756 1.33253 1.38001 1.53314 1.57928 1.88724 1.97152 1.98031 2.26152 2.71963 2.88602 3.14971 3.33326 3.45042 3.82448 3.84993 3.88961 4.08614 4.11049 4.19525 4.20793 4.32437 4.34715 4.40241 4.41698 4.42689 4.48949 4.54178 4.66844 4.77467 4.87380 4.92078 4.92572 5.02829 5.05065 5.11844 5.27748 5.36214 5.37574 5.46125 5.86560 5.96743 6.11755 6.38462 6.55558 6.73729 6.95395 7.07681 7.49091 8.05972 8.67010 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008351 B = 0.003600 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3352.197715 B = 7775.971020 C =10348.128889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 C -0.007 4.007 4 C -0.205 4.205 5 C -0.044 4.044 6 C 0.577 3.423 7 O -0.533 6.533 8 N -0.605 5.605 9 C 0.069 3.931 10 C 0.114 3.886 11 C 0.061 3.939 12 H 0.057 0.943 13 C -0.132 4.132 14 N -0.682 5.682 15 C 0.064 3.936 16 C 0.433 3.567 17 O -0.620 6.620 18 N -0.571 5.571 19 C -0.336 4.336 20 H 0.075 0.925 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.995 3.005 24 H -0.275 1.275 25 H -0.267 1.267 26 H -0.268 1.268 27 N -0.333 5.333 28 O 0.121 5.879 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.179 0.821 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.136 0.864 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.341 0.659 44 H 0.054 0.946 45 H 0.105 0.895 46 H 0.396 0.604 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.455 3.789 -12.008 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 C -0.070 4.070 4 C -0.228 4.228 5 C -0.201 4.201 6 C 0.364 3.636 7 O -0.407 6.407 8 N -0.338 5.338 9 C -0.072 4.072 10 C -0.008 4.008 11 C -0.049 4.049 12 H 0.075 0.925 13 C -0.191 4.191 14 N -0.321 5.321 15 C -0.069 4.069 16 C 0.220 3.780 17 O -0.506 6.506 18 N -0.209 5.209 19 C -0.466 4.466 20 H 0.093 0.907 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.818 3.182 24 H -0.200 1.200 25 H -0.192 1.192 26 H -0.193 1.193 27 N -0.035 5.035 28 O 0.046 5.954 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.197 0.803 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.130 0.870 38 H 0.154 0.846 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.164 0.836 44 H 0.072 0.928 45 H 0.123 0.877 46 H 0.230 0.770 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.314 4.510 -11.373 23.714 hybrid contribution 0.901 -1.053 0.217 1.403 sum -19.413 3.457 -11.156 22.656 Atomic orbital electron populations 1.21797 0.92144 1.04066 1.02503 1.20457 0.97521 0.83507 1.06696 1.25095 0.99978 0.97969 0.83947 1.22633 1.05886 0.91763 1.02539 1.23486 1.07489 0.98261 0.90876 1.17400 0.77606 0.82348 0.86269 1.90907 1.52264 1.83444 1.14130 1.47895 1.67244 1.09712 1.08949 1.22310 1.02850 1.05426 0.76645 1.22035 0.94113 0.86445 0.98175 1.22174 0.95374 0.90852 0.96481 0.92524 1.21730 1.01603 0.96133 0.99596 1.60277 1.01451 1.06984 1.63357 1.21598 0.92275 0.95457 0.97559 1.20890 0.82704 0.88805 0.85599 1.90518 1.53278 1.61311 1.45484 1.41915 1.10126 1.23253 1.45564 1.19694 0.96574 1.01587 1.28700 0.90683 1.26080 0.94886 1.02597 0.97616 1.69679 1.05738 1.40881 1.39734 0.84849 0.78095 0.77088 0.78139 1.19976 1.19171 1.19262 1.74253 1.14902 0.99811 1.14576 1.84726 1.59392 1.17217 1.34032 0.92042 0.89095 0.92724 0.87065 0.87110 0.80339 0.93208 0.89460 0.86962 0.84647 0.90473 0.93108 0.93070 0.88908 0.83574 0.92794 0.87658 0.77019 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 71.98 0.71 -0.62 16 2 C -0.04 -0.51 6.50 29.85 0.19 -0.32 16 3 C -0.01 -0.14 6.73 25.01 0.17 0.03 16 4 C -0.21 -5.60 10.93 22.60 0.25 -5.36 16 5 C -0.04 -1.35 6.87 42.96 0.30 -1.05 16 6 C 0.58 19.77 6.20 86.93 0.54 20.31 16 7 O -0.53 -22.65 14.92 -3.71 -0.06 -22.70 16 8 N -0.60 -15.87 2.66 -849.66 -2.26 -18.13 16 9 C 0.07 1.35 9.72 127.77 1.24 2.59 16 10 C 0.11 2.61 5.23 86.38 0.45 3.06 16 11 C 0.06 1.64 2.95 44.91 0.13 1.77 16 12 H 0.06 1.36 7.80 -2.39 -0.02 1.34 16 13 C -0.13 -3.00 9.41 71.98 0.68 -2.32 16 14 N -0.68 -26.84 5.77 -495.60 -2.86 -29.71 16 15 C 0.06 2.60 5.97 85.56 0.51 3.11 16 16 C 0.43 23.32 7.82 87.66 0.69 24.01 16 17 O -0.62 -39.01 15.78 -3.04 -0.05 -39.06 16 18 N -0.57 -31.83 5.29 -306.99 -1.62 -33.46 16 19 C -0.34 -20.32 9.68 84.04 0.81 -19.50 16 20 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 22 N -0.92 -51.31 13.05 21.66 0.28 -51.02 16 23 Si 1.00 44.52 29.55 68.60 2.03 46.55 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 N -0.33 -8.88 8.69 -49.52 -0.43 -9.31 16 28 O 0.12 2.77 11.18 71.95 0.80 3.58 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.18 4.78 8.06 -2.91 -0.02 4.76 16 35 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.09 1.79 5.34 -2.39 -0.01 1.78 16 37 H 0.11 1.29 7.83 -2.39 -0.02 1.28 16 38 H 0.14 1.76 7.86 -2.39 -0.02 1.74 16 39 H 0.08 2.09 7.47 -2.38 -0.02 2.07 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.05 1.24 7.45 -2.39 -0.02 1.22 16 42 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.34 14.99 4.06 -89.69 -0.36 14.62 16 44 H 0.05 1.99 8.06 -2.39 -0.02 1.97 16 45 H 0.11 3.83 7.44 -2.39 -0.02 3.81 16 46 H 0.40 20.82 7.90 -92.71 -0.73 20.08 16 47 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -83.23 391.46 2.88 -80.34 By element: Atomic # 1 Polarization: 47.50 SS G_CDS: -0.09 Total: 47.41 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: 7.14 Total: 25.51 kcal Atomic # 7 Polarization: -134.73 SS G_CDS: -6.89 Total: -141.62 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: 0.70 Total: -58.19 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -83.23 2.88 -80.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283701315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.796 kcal (2) G-P(sol) polarization free energy of solvation -83.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds