Wall clock time and date at job start Tue Mar 31 2020 21:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30528 * 119.70120 * 2 1 4 4 N 1.28266 * 122.98316 * 179.97438 * 3 2 1 5 5 C 1.46501 * 119.03490 * 180.02562 * 4 3 2 6 6 C 1.34691 * 121.93788 * 359.97438 * 4 3 2 7 7 O 1.21901 * 120.46613 * 180.02562 * 6 4 3 8 8 C 1.42328 * 119.06328 * 0.02562 * 6 4 3 9 9 C 1.47409 * 121.29631 * 180.02562 * 8 6 4 10 10 O 1.21602 * 120.00043 * 82.85744 * 9 8 6 11 11 N 1.34780 * 119.99659 * 262.85837 * 9 8 6 12 12 C 1.46497 * 120.00415 * 355.20936 * 11 9 8 13 13 C 1.46503 * 119.99941 * 175.21634 * 11 9 8 14 14 C 1.53004 * 109.47367 * 89.99387 * 13 11 9 15 15 H 1.09004 * 109.47102 * 305.00246 * 14 13 11 16 16 O 1.42897 * 109.46673 * 65.00031 * 14 13 11 17 17 C 1.52997 * 109.47091 * 184.99948 * 14 13 11 18 18 N 1.46500 * 109.47097 * 180.02562 * 17 14 13 19 19 C 1.36938 * 120.00209 * 180.02562 * 18 17 14 20 20 H 1.07998 * 119.99554 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00162 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99922 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00124 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46969 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47393 * 120.00381 * 23 21 19 26 26 H 1.48504 * 109.47336 * 240.00106 * 23 21 19 27 27 C 1.39317 * 117.39890 * 0.27866 * 8 6 4 28 28 C 1.50697 * 120.98743 * 179.70517 * 27 8 6 29 29 H 1.08998 * 109.47152 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47476 * 119.99371 * 1 2 3 31 31 H 1.09004 * 109.47028 * 239.99658 * 1 2 3 32 32 H 1.09000 * 109.47051 * 269.98138 * 5 4 3 33 33 H 1.08999 * 109.46580 * 29.97740 * 5 4 3 34 34 H 1.08994 * 109.47340 * 149.98066 * 5 4 3 35 35 H 1.09004 * 109.47382 * 275.43723 * 12 11 9 36 36 H 1.09000 * 109.46888 * 35.42636 * 12 11 9 37 37 H 1.08999 * 109.47404 * 155.43064 * 12 11 9 38 38 H 1.09002 * 109.46787 * 329.99981 * 13 11 9 39 39 H 1.08992 * 109.46941 * 209.99746 * 13 11 9 40 40 H 0.96700 * 114.00047 * 60.00570 * 16 14 13 41 41 H 1.08994 * 109.47339 * 299.99960 * 17 14 13 42 42 H 1.09005 * 109.46894 * 60.00258 * 17 14 13 43 43 H 0.97002 * 119.99689 * 359.97438 * 18 17 14 44 44 H 0.97010 * 119.99870 * 179.97438 * 22 21 19 45 45 H 1.09006 * 109.47299 * 85.14428 * 28 27 8 46 46 H 1.09002 * 109.47192 * 205.14531 * 28 27 8 47 47 H 1.09002 * 109.47343 * 325.14349 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1537 1.1338 0.0000 4 7 3.4342 1.2072 0.0005 5 6 4.0708 2.5267 0.0010 6 6 4.2110 0.1069 0.0015 7 8 5.4258 0.2079 0.0024 8 6 3.5934 -1.1754 0.0016 9 6 4.3960 -2.4119 0.0033 10 8 4.8356 -2.8500 1.0490 11 7 4.6425 -3.0568 -1.1543 12 6 4.0270 -2.5893 -2.3988 13 6 5.5259 -4.2254 -1.1679 14 6 4.6998 -5.4921 -0.9350 15 1 4.1293 -5.3891 -0.0118 16 8 3.8025 -5.6836 -2.0305 17 6 5.6350 -6.6979 -0.8249 18 7 4.8440 -7.9107 -0.6025 19 6 5.4696 -9.1217 -0.4712 20 1 6.5462 -9.1826 -0.5312 21 6 4.7202 -10.2708 -0.2599 22 7 3.4081 -10.1965 -0.1862 23 14 5.5735 -11.9229 -0.0815 24 1 7.0418 -11.7371 -0.2025 25 1 5.2563 -12.5029 1.2482 26 1 5.1008 -12.8420 -1.1478 27 6 2.2009 -1.2163 -0.0055 28 6 1.4633 -2.5304 -0.0126 29 1 -0.3633 1.0276 0.0005 30 1 -0.3634 -0.5137 -0.8900 31 1 -0.3633 -0.5139 0.8900 32 1 4.2293 2.8540 -1.0265 33 1 3.4266 3.2405 0.5144 34 1 5.0298 2.4673 0.5154 35 1 3.0262 -3.0115 -2.4901 36 1 3.9625 -1.5013 -2.3858 37 1 4.6342 -2.9073 -3.2463 38 1 6.2706 -4.1271 -0.3781 39 1 6.0268 -4.2909 -2.1337 40 1 4.2419 -5.7829 -2.8861 41 1 6.2054 -6.8008 -1.7480 42 1 6.3195 -6.5517 0.0108 43 1 3.8771 -7.8558 -0.5474 44 1 2.8843 -10.9996 -0.0389 45 1 1.3562 -2.8926 1.0099 46 1 0.4764 -2.3908 -0.4539 47 1 2.0237 -3.2585 -0.5991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284438420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:53 Heat of formation + Delta-G solvation = -34.666373 kcal Electronic energy + Delta-G solvation = -30239.865989 eV Core-core repulsion = 26039.171619 eV Total energy + Delta-G solvation = -4200.694370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.47920 -39.96610 -38.32583 -37.49792 -36.20928 -35.20946 -33.97993 -32.81903 -31.33524 -30.96352 -29.52259 -28.48735 -27.01347 -26.68007 -25.83830 -24.23214 -22.68610 -22.56580 -21.20625 -20.03377 -18.82297 -17.82536 -17.24613 -17.13394 -16.78318 -16.53134 -16.15160 -15.84737 -15.12757 -14.93169 -14.50059 -14.42207 -14.27595 -13.83420 -13.73513 -13.64101 -13.39155 -13.32094 -13.09057 -12.98519 -12.93339 -12.82786 -12.67712 -12.43956 -12.40462 -12.35988 -12.03710 -11.56197 -11.47992 -10.91518 -10.81394 -10.67700 -10.48534 -10.20102 -10.12212 -9.91869 -9.76796 -9.65200 -8.87130 -8.74160 -8.55280 -6.88554 -5.72219 -3.01238 -0.05775 1.21067 1.73899 2.46298 2.73834 2.98930 3.45652 3.51058 3.53478 3.65624 3.98331 4.12053 4.31339 4.58739 4.65049 4.76724 4.79579 4.82028 4.91594 4.98179 5.06488 5.10382 5.11255 5.15286 5.19636 5.26178 5.29808 5.35886 5.47162 5.54245 5.55098 5.58960 5.68304 5.70763 5.81079 5.90276 6.01254 6.25750 6.41801 6.58408 6.77238 7.18597 7.26086 7.72474 7.75021 8.00285 8.04056 8.46223 9.57779 10.15725 10.51866 11.50325 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021675 B = 0.002464 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.488806 B =11361.581622 C =11986.656612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.063 3.937 3 N -0.215 5.215 4 N -0.345 5.345 5 C 0.082 3.918 6 C 0.498 3.502 7 O -0.520 6.520 8 C -0.206 4.206 9 C 0.587 3.413 10 O -0.515 6.515 11 N -0.596 5.596 12 C 0.085 3.915 13 C 0.088 3.912 14 C 0.087 3.913 15 H 0.101 0.899 16 O -0.550 6.550 17 C 0.126 3.874 18 N -0.725 5.725 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.930 5.930 23 Si 0.907 3.093 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.010 3.990 28 C -0.136 4.136 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.367 0.633 41 H 0.020 0.980 42 H 0.028 0.972 43 H 0.389 0.611 44 H 0.254 0.746 45 H 0.096 0.904 46 H 0.089 0.911 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.784 28.055 -4.979 29.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 N -0.040 5.040 4 N -0.165 5.165 5 C -0.058 4.058 6 C 0.296 3.704 7 O -0.397 6.397 8 C -0.221 4.221 9 C 0.373 3.627 10 O -0.390 6.390 11 N -0.329 5.329 12 C -0.059 4.059 13 C -0.035 4.035 14 C 0.026 3.974 15 H 0.119 0.881 16 O -0.355 6.355 17 C -0.003 4.003 18 N -0.370 5.370 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.003 3.997 28 C -0.192 4.192 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.213 0.787 41 H 0.038 0.962 42 H 0.045 0.955 43 H 0.223 0.777 44 H 0.064 0.936 45 H 0.115 0.885 46 H 0.108 0.892 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.164 28.765 -3.940 29.680 hybrid contribution 0.911 -1.646 -0.326 1.910 sum -5.253 27.118 -4.266 27.950 Atomic orbital electron populations 1.20600 0.85730 1.04525 1.03781 1.21678 0.98092 0.86522 1.04445 1.70653 0.95070 1.28854 1.09393 1.46543 1.02008 1.09862 1.58125 1.22170 0.99366 0.79810 1.04469 1.17569 0.88047 0.84484 0.80347 1.90976 1.11996 1.85836 1.50857 1.21378 0.94050 0.94574 1.12090 1.17270 0.79417 0.82123 0.83906 1.90853 1.50463 1.66703 1.30966 1.47580 1.48028 1.29759 1.07495 1.21782 0.99150 0.98950 0.85971 1.22339 0.92781 0.84629 1.03779 1.22541 0.91901 0.92165 0.90748 0.88075 1.86588 1.36039 1.95200 1.17632 1.21215 0.93618 0.87173 0.98265 1.42238 1.06189 1.01489 1.87062 1.19270 0.91539 0.84905 1.41406 0.91229 1.24752 0.95486 0.97881 1.02892 1.69697 1.03833 1.27771 1.56577 0.86115 0.78443 0.84344 0.77280 1.20586 1.21858 1.21874 1.21526 0.92120 0.97557 0.88448 1.21157 1.01012 0.92183 1.04861 0.89935 0.89554 0.89585 0.90007 0.88555 0.88180 0.91502 0.92566 0.90460 0.88754 0.89787 0.78654 0.96230 0.95460 0.77678 0.93598 0.88523 0.89180 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 8.96 36.00 0.32 -0.05 16 2 C 0.06 0.51 6.87 -82.48 -0.57 -0.05 16 3 N -0.21 -1.97 10.74 33.66 0.36 -1.61 16 4 N -0.35 -3.61 3.62 -69.82 -0.25 -3.86 16 5 C 0.08 0.56 10.58 59.85 0.63 1.19 16 6 C 0.50 6.89 7.50 -14.73 -0.11 6.77 16 7 O -0.52 -8.75 16.18 5.01 0.08 -8.67 16 8 C -0.21 -2.75 3.89 -104.19 -0.41 -3.15 16 9 C 0.59 9.34 5.58 -12.53 -0.07 9.27 16 10 O -0.52 -10.26 16.73 5.28 0.09 -10.17 16 11 N -0.60 -7.99 2.71 -182.86 -0.50 -8.49 16 12 C 0.08 0.83 9.51 59.85 0.57 1.39 16 13 C 0.09 1.22 5.07 -4.04 -0.02 1.20 16 14 C 0.09 1.46 3.30 -26.73 -0.09 1.37 16 15 H 0.10 1.97 8.14 -51.93 -0.42 1.54 16 16 O -0.55 -8.75 12.64 -35.23 -0.45 -9.20 16 17 C 0.13 2.57 5.92 -4.04 -0.02 2.54 16 18 N -0.72 -18.98 5.49 -59.91 -0.33 -19.31 16 19 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.84 13.06 55.49 0.72 -28.11 16 23 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 27 C 0.01 0.10 5.92 -103.55 -0.61 -0.51 16 28 C -0.14 -1.16 9.31 36.00 0.34 -0.83 16 29 H 0.08 0.30 8.10 -51.93 -0.42 -0.12 16 30 H 0.09 0.24 7.56 -51.93 -0.39 -0.15 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.43 8.13 -51.93 -0.42 0.01 16 34 H 0.10 0.75 7.36 -51.93 -0.38 0.37 16 35 H 0.07 0.60 7.32 -51.93 -0.38 0.22 16 36 H 0.06 0.54 7.01 -51.93 -0.36 0.17 16 37 H 0.08 0.61 7.83 -51.93 -0.41 0.21 16 38 H 0.09 1.46 7.49 -51.93 -0.39 1.07 16 39 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 40 H 0.37 4.65 9.05 45.56 0.41 5.07 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.39 10.90 7.54 -40.82 -0.31 10.59 16 44 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 0.49 6.63 -51.93 -0.34 0.14 16 47 H 0.09 0.95 6.14 -51.93 -0.32 0.63 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -39.12 392.98 -5.86 -44.98 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.21 Total: 9.12 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -0.28 Total: 11.58 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.01 Total: -61.38 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.28 Total: -28.05 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -39.12 -5.86 -44.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284438420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.316 kcal (2) G-P(sol) polarization free energy of solvation -39.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds