Wall clock time and date at job start Tue Mar 31 2020 21:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30528 * 119.70120 * 2 1 4 4 N 1.28266 * 122.98316 * 179.97438 * 3 2 1 5 5 C 1.46501 * 119.03490 * 180.02562 * 4 3 2 6 6 C 1.34691 * 121.93788 * 359.97438 * 4 3 2 7 7 O 1.21901 * 120.46613 * 180.02562 * 6 4 3 8 8 C 1.42328 * 119.06328 * 0.02562 * 6 4 3 9 9 C 1.47409 * 121.29631 * 180.02562 * 8 6 4 10 10 O 1.21602 * 120.00043 * 82.85744 * 9 8 6 11 11 N 1.34780 * 119.99659 * 262.85837 * 9 8 6 12 12 C 1.46497 * 120.00415 * 355.20936 * 11 9 8 13 13 C 1.46503 * 119.99941 * 175.21634 * 11 9 8 14 14 C 1.53004 * 109.47367 * 89.99387 * 13 11 9 15 15 H 1.09004 * 109.47102 * 305.00246 * 14 13 11 16 16 O 1.42897 * 109.46673 * 65.00031 * 14 13 11 17 17 C 1.52997 * 109.47091 * 184.99948 * 14 13 11 18 18 N 1.46500 * 109.47097 * 180.02562 * 17 14 13 19 19 C 1.36938 * 120.00209 * 180.02562 * 18 17 14 20 20 H 1.07998 * 119.99554 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00162 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99922 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00124 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46969 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47393 * 120.00381 * 23 21 19 26 26 H 1.48504 * 109.47336 * 240.00106 * 23 21 19 27 27 C 1.39317 * 117.39890 * 0.27866 * 8 6 4 28 28 C 1.50697 * 120.98743 * 179.70517 * 27 8 6 29 29 H 1.08998 * 109.47152 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47476 * 119.99371 * 1 2 3 31 31 H 1.09004 * 109.47028 * 239.99658 * 1 2 3 32 32 H 1.09000 * 109.47051 * 269.98138 * 5 4 3 33 33 H 1.08999 * 109.46580 * 29.97740 * 5 4 3 34 34 H 1.08994 * 109.47340 * 149.98066 * 5 4 3 35 35 H 1.09004 * 109.47382 * 275.43723 * 12 11 9 36 36 H 1.09000 * 109.46888 * 35.42636 * 12 11 9 37 37 H 1.08999 * 109.47404 * 155.43064 * 12 11 9 38 38 H 1.09002 * 109.46787 * 329.99981 * 13 11 9 39 39 H 1.08992 * 109.46941 * 209.99746 * 13 11 9 40 40 H 0.96700 * 114.00047 * 60.00570 * 16 14 13 41 41 H 1.08994 * 109.47339 * 299.99960 * 17 14 13 42 42 H 1.09005 * 109.46894 * 60.00258 * 17 14 13 43 43 H 0.97002 * 119.99689 * 359.97438 * 18 17 14 44 44 H 0.97010 * 119.99870 * 179.97438 * 22 21 19 45 45 H 1.09006 * 109.47299 * 85.14428 * 28 27 8 46 46 H 1.09002 * 109.47192 * 205.14531 * 28 27 8 47 47 H 1.09002 * 109.47343 * 325.14349 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1537 1.1338 0.0000 4 7 3.4342 1.2072 0.0005 5 6 4.0708 2.5267 0.0010 6 6 4.2110 0.1069 0.0015 7 8 5.4258 0.2079 0.0024 8 6 3.5934 -1.1754 0.0016 9 6 4.3960 -2.4119 0.0033 10 8 4.8356 -2.8500 1.0490 11 7 4.6425 -3.0568 -1.1543 12 6 4.0270 -2.5893 -2.3988 13 6 5.5259 -4.2254 -1.1679 14 6 4.6998 -5.4921 -0.9350 15 1 4.1293 -5.3891 -0.0118 16 8 3.8025 -5.6836 -2.0305 17 6 5.6350 -6.6979 -0.8249 18 7 4.8440 -7.9107 -0.6025 19 6 5.4696 -9.1217 -0.4712 20 1 6.5462 -9.1826 -0.5312 21 6 4.7202 -10.2708 -0.2599 22 7 3.4081 -10.1965 -0.1862 23 14 5.5735 -11.9229 -0.0815 24 1 7.0418 -11.7371 -0.2025 25 1 5.2563 -12.5029 1.2482 26 1 5.1008 -12.8420 -1.1478 27 6 2.2009 -1.2163 -0.0055 28 6 1.4633 -2.5304 -0.0126 29 1 -0.3633 1.0276 0.0005 30 1 -0.3634 -0.5137 -0.8900 31 1 -0.3633 -0.5139 0.8900 32 1 4.2293 2.8540 -1.0265 33 1 3.4266 3.2405 0.5144 34 1 5.0298 2.4673 0.5154 35 1 3.0262 -3.0115 -2.4901 36 1 3.9625 -1.5013 -2.3858 37 1 4.6342 -2.9073 -3.2463 38 1 6.2706 -4.1271 -0.3781 39 1 6.0268 -4.2909 -2.1337 40 1 4.2419 -5.7829 -2.8861 41 1 6.2054 -6.8008 -1.7480 42 1 6.3195 -6.5517 0.0108 43 1 3.8771 -7.8558 -0.5474 44 1 2.8843 -10.9996 -0.0389 45 1 1.3562 -2.8926 1.0099 46 1 0.4764 -2.3908 -0.4539 47 1 2.0237 -3.2585 -0.5991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284438420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:52 Heat of formation + Delta-G solvation = -66.876673 kcal Electronic energy + Delta-G solvation = -30241.262732 eV Core-core repulsion = 26039.171619 eV Total energy + Delta-G solvation = -4202.091114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.32594 -41.10445 -39.27042 -38.86577 -37.07515 -36.49505 -35.80457 -33.65071 -33.19282 -31.69438 -30.95393 -29.17245 -27.99946 -27.78726 -26.92666 -25.51354 -24.24511 -23.38903 -22.74314 -21.06890 -19.70656 -19.24699 -18.77573 -18.17639 -17.76026 -17.68115 -17.18729 -16.93347 -16.53909 -16.39461 -16.18942 -15.30349 -15.12940 -15.08108 -14.88956 -14.62250 -14.60769 -14.34130 -14.11096 -13.99877 -13.78488 -13.75677 -13.67151 -13.49257 -13.39376 -13.00519 -12.91087 -12.81042 -12.80031 -12.66403 -12.37098 -12.16675 -12.02556 -11.83782 -11.61953 -11.20883 -11.00703 -10.98896 -10.82989 -9.73011 -9.60806 -9.02091 -7.95288 -5.25149 -0.91555 0.37751 0.89982 1.40165 1.46427 1.48029 1.57983 1.75363 2.08308 2.54919 2.85691 3.13008 3.28880 3.35692 3.46454 3.60727 3.70286 3.85950 4.02958 4.12759 4.21045 4.24974 4.30737 4.31552 4.41570 4.43534 4.49937 4.54191 4.57014 4.64087 4.65533 4.71803 4.79006 4.82106 4.91134 4.91892 5.02798 5.09497 5.18034 5.34739 5.40575 5.47037 6.10963 6.25780 6.33608 6.85841 6.89762 6.95729 7.32468 8.07480 8.31668 9.28300 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021675 B = 0.002464 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.488806 B =11361.581622 C =11986.656612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.068 3.932 3 N -0.212 5.212 4 N -0.341 5.341 5 C 0.075 3.925 6 C 0.489 3.511 7 O -0.569 6.569 8 C -0.244 4.244 9 C 0.582 3.418 10 O -0.573 6.573 11 N -0.591 5.591 12 C 0.081 3.919 13 C 0.095 3.905 14 C 0.110 3.890 15 H 0.068 0.932 16 O -0.555 6.555 17 C 0.123 3.877 18 N -0.739 5.739 19 C -0.247 4.247 20 H 0.076 0.924 21 C -0.077 4.077 22 N -0.968 5.968 23 Si 0.976 3.024 24 H -0.266 1.266 25 H -0.294 1.294 26 H -0.289 1.289 27 C 0.035 3.965 28 C -0.136 4.136 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.385 0.615 41 H 0.042 0.958 42 H 0.019 0.981 43 H 0.376 0.624 44 H 0.252 0.748 45 H 0.094 0.906 46 H 0.131 0.869 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.182 29.150 -6.686 31.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 N -0.037 5.037 4 N -0.160 5.160 5 C -0.064 4.064 6 C 0.288 3.712 7 O -0.450 6.450 8 C -0.259 4.259 9 C 0.369 3.631 10 O -0.452 6.452 11 N -0.322 5.322 12 C -0.061 4.061 13 C -0.029 4.029 14 C 0.049 3.951 15 H 0.086 0.914 16 O -0.362 6.362 17 C -0.004 4.004 18 N -0.382 5.382 19 C -0.379 4.379 20 H 0.094 0.906 21 C -0.269 4.269 22 N -0.619 5.619 23 Si 0.805 3.195 24 H -0.190 1.190 25 H -0.221 1.221 26 H -0.216 1.216 27 C 0.028 3.972 28 C -0.193 4.193 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.234 0.766 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.208 0.792 44 H 0.060 0.940 45 H 0.112 0.888 46 H 0.149 0.851 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.564 29.922 -5.710 31.387 hybrid contribution 1.230 -1.902 0.168 2.271 sum -6.334 28.020 -5.542 29.257 Atomic orbital electron populations 1.20844 0.82329 1.06001 1.05548 1.22380 0.99927 0.85315 1.02480 1.70820 0.94132 1.29113 1.09588 1.46735 1.02353 1.10100 1.56842 1.22451 0.99338 0.78688 1.05915 1.17709 0.87739 0.85427 0.80340 1.90931 1.13734 1.86557 1.53803 1.21204 0.95251 0.93472 1.15937 1.17748 0.78941 0.82733 0.83643 1.90802 1.52976 1.68426 1.33015 1.47677 1.47368 1.28921 1.08205 1.22021 0.99949 0.99283 0.84845 1.22205 0.92052 0.83557 1.05055 1.22085 0.90945 0.91995 0.90086 0.91418 1.86561 1.36115 1.95183 1.18293 1.21408 0.93856 0.86569 0.98583 1.42425 1.05946 1.02646 1.87216 1.19682 0.91976 0.86055 1.40190 0.90626 1.25619 0.96207 1.01615 1.03454 1.69855 1.05324 1.28494 1.58204 0.85037 0.78079 0.79643 0.76758 1.19046 1.22149 1.21633 1.21806 0.90846 0.99050 0.85502 1.21261 1.02550 0.90810 1.04650 0.88733 0.87218 0.88125 0.88234 0.85847 0.89341 0.90407 0.92286 0.87994 0.90755 0.85993 0.76645 0.94014 0.96281 0.79193 0.93961 0.88817 0.85118 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.39 8.96 71.23 0.64 0.24 16 2 C 0.07 0.94 6.87 43.19 0.30 1.23 16 3 N -0.21 -3.44 10.74 -47.43 -0.51 -3.95 16 4 N -0.34 -6.90 3.62 -492.99 -1.78 -8.69 16 5 C 0.07 0.96 10.58 127.77 1.35 2.31 16 6 C 0.49 13.89 7.50 85.27 0.64 14.53 16 7 O -0.57 -20.29 16.18 -4.99 -0.08 -20.37 16 8 C -0.24 -6.64 3.89 -19.59 -0.08 -6.72 16 9 C 0.58 19.36 5.58 86.66 0.48 19.84 16 10 O -0.57 -24.54 16.73 -4.04 -0.07 -24.61 16 11 N -0.59 -15.89 2.71 -850.68 -2.30 -18.19 16 12 C 0.08 1.44 9.51 127.77 1.21 2.66 16 13 C 0.09 2.62 5.07 86.38 0.44 3.06 16 14 C 0.11 3.71 3.30 30.59 0.10 3.81 16 15 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 16 O -0.56 -17.06 12.64 -148.98 -1.88 -18.95 16 17 C 0.12 5.03 5.92 86.38 0.51 5.54 16 18 N -0.74 -39.14 5.49 -343.46 -1.89 -41.03 16 19 C -0.25 -14.24 9.99 84.03 0.84 -13.41 16 20 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 21 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 22 N -0.97 -60.88 13.06 21.65 0.28 -60.59 16 23 Si 0.98 47.12 29.55 68.60 2.03 49.14 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 C 0.04 0.66 5.92 -19.17 -0.11 0.55 16 28 C -0.14 -2.12 9.31 71.24 0.66 -1.46 16 29 H 0.09 0.28 8.10 -2.39 -0.02 0.26 16 30 H 0.11 0.06 7.56 -2.39 -0.02 0.04 16 31 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 0.87 8.13 -2.39 -0.02 0.85 16 34 H 0.09 1.37 7.36 -2.39 -0.02 1.35 16 35 H 0.08 1.24 7.32 -2.39 -0.02 1.23 16 36 H 0.06 1.05 7.01 -2.39 -0.02 1.04 16 37 H 0.10 1.32 7.83 -2.39 -0.02 1.30 16 38 H 0.07 2.40 7.49 -2.39 -0.02 2.38 16 39 H 0.12 2.43 7.86 -2.39 -0.02 2.41 16 40 H 0.38 8.84 9.05 -74.06 -0.67 8.17 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.38 21.56 7.54 -92.71 -0.70 20.86 16 44 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 45 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.13 0.92 6.63 -2.39 -0.02 0.90 16 47 H 0.07 1.43 6.14 -2.39 -0.01 1.42 16 Total: -1.00 -89.38 392.98 0.90 -88.48 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: -0.35 Total: 30.63 kcal Atomic # 6 Polarization: 20.67 SS G_CDS: 7.46 Total: 28.13 kcal Atomic # 7 Polarization: -126.25 SS G_CDS: -6.20 Total: -132.45 kcal Atomic # 8 Polarization: -61.90 SS G_CDS: -2.03 Total: -63.93 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Total: -89.38 0.90 -88.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284438420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.602 kcal (2) G-P(sol) polarization free energy of solvation -89.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds