Wall clock time and date at job start Tue Mar 31 2020 20:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33223 * 126.02098 * 2 1 4 4 C 1.31534 * 109.76080 * 180.25770 * 3 2 1 5 5 O 1.35209 * 125.48955 * 179.78395 * 4 3 2 6 6 N 1.34940 * 109.01581 * 359.76461 * 4 3 2 7 7 H 0.97005 * 126.54097 * 179.97438 * 6 4 3 8 8 C 1.36725 * 126.01481 * 179.86041 * 2 1 3 9 9 C 1.46371 * 126.82817 * 0.02562 * 8 2 1 10 10 O 1.21736 * 119.99796 * 104.20554 * 9 8 2 11 11 N 1.34772 * 120.00441 * 284.20306 * 9 8 2 12 12 C 1.46932 * 120.62869 * 355.12073 * 11 9 8 13 13 C 1.53193 * 108.77438 * 233.58541 * 12 11 9 14 14 C 1.53045 * 109.33837 * 305.37845 * 13 12 11 15 15 C 1.53039 * 109.53991 * 61.31533 * 14 13 12 16 16 H 1.09002 * 109.49691 * 58.65226 * 15 14 13 17 17 N 1.46497 * 109.49920 * 178.71487 * 15 14 13 18 18 C 1.36940 * 119.99776 * 59.93703 * 17 15 14 19 19 H 1.08006 * 119.99786 * 39.28989 * 18 17 15 20 20 C 1.38806 * 119.99935 * 219.28244 * 18 17 15 21 21 N 1.31621 * 120.00350 * 19.20796 * 20 18 17 22 22 Si 1.86803 * 120.00107 * 199.20565 * 20 18 17 23 23 H 1.48498 * 109.47203 * 60.00171 * 22 20 18 24 24 H 1.48498 * 109.46997 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46930 * 300.00306 * 22 20 18 26 26 C 1.46497 * 120.00266 * 239.93494 * 17 15 14 27 27 C 1.53003 * 109.47426 * 265.98047 * 26 17 15 28 28 O 1.42901 * 109.46790 * 65.00107 * 27 26 17 29 29 C 1.46927 * 120.63244 * 175.09074 * 11 9 8 30 30 H 1.08997 * 109.47213 * 270.14183 * 1 2 3 31 31 H 1.08993 * 109.47264 * 30.14074 * 1 2 3 32 32 H 1.09003 * 109.47089 * 150.14437 * 1 2 3 33 33 H 0.96698 * 114.00107 * 269.97666 * 5 4 3 34 34 H 1.09003 * 109.58159 * 353.36741 * 12 11 9 35 35 H 1.08995 * 109.58529 * 113.65621 * 12 11 9 36 36 H 1.09001 * 109.49717 * 65.30883 * 13 12 11 37 37 H 1.08996 * 109.50022 * 185.37831 * 13 12 11 38 38 H 1.08997 * 109.42982 * 301.31494 * 14 13 12 39 39 H 1.08992 * 109.48702 * 181.35184 * 14 13 12 40 40 H 0.96995 * 120.00710 * 179.97438 * 21 20 18 41 41 H 1.09004 * 109.47007 * 25.98136 * 26 17 15 42 42 H 1.09004 * 109.47350 * 145.98178 * 26 17 15 43 43 H 1.08995 * 109.46974 * 184.99753 * 27 26 17 44 44 H 1.08998 * 109.46981 * 305.00188 * 27 26 17 45 45 H 0.96701 * 113.99425 * 180.02562 * 28 27 26 46 46 H 1.08993 * 109.58960 * 6.63040 * 29 11 9 47 47 H 1.09002 * 109.70311 * 246.27208 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2905 1.0775 0.0000 4 6 3.5532 0.7092 -0.0056 5 8 4.6150 1.5463 -0.0114 6 7 3.6181 -0.6386 -0.0041 7 1 4.4243 -1.1780 -0.0076 8 6 2.3110 -1.1059 0.0027 9 6 1.8792 -2.5045 0.0056 10 8 1.9472 -3.1646 -1.0150 11 7 1.4063 -3.0615 1.1380 12 6 1.4172 -2.3123 2.4020 13 6 2.1295 -3.1522 3.4669 14 6 1.4634 -4.5272 3.5570 15 6 1.5879 -5.2454 2.2114 16 1 2.6411 -5.3475 1.9495 17 7 0.9772 -6.5735 2.3076 18 6 -0.3488 -6.6958 2.6272 19 1 -1.0685 -6.0005 2.2209 20 6 -0.7678 -7.7134 3.4731 21 7 0.0999 -8.3155 4.2586 22 14 -2.5633 -8.2284 3.4969 23 1 -2.9614 -8.6984 2.1457 24 1 -2.7502 -9.3268 4.4786 25 1 -3.4057 -7.0689 3.8857 26 6 1.7848 -7.7708 2.0620 27 6 1.6433 -8.1898 0.5972 28 8 2.2016 -7.1782 -0.2436 29 6 0.8696 -4.4292 1.1321 30 1 -0.3633 0.0025 1.0276 31 1 -0.3633 0.8886 -0.5160 32 1 -0.3633 -0.8913 -0.5116 33 1 4.9199 1.7887 -0.8964 34 1 1.9484 -1.3705 2.2638 35 1 0.3931 -2.1116 2.7166 36 1 3.1777 -3.2735 3.1935 37 1 2.0610 -2.6503 4.4320 38 1 0.4096 -4.4039 3.8066 39 1 1.9530 -5.1183 4.3308 40 1 -0.1930 -9.0264 4.8500 41 1 2.8309 -7.5541 2.2785 42 1 1.4405 -8.5799 2.7062 43 1 2.1719 -9.1292 0.4354 44 1 0.5882 -8.3205 0.3570 45 1 2.1462 -7.3773 -1.1883 46 1 1.0393 -4.8842 0.1564 47 1 -0.1995 -4.4054 1.3432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316750979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:28 Heat of formation + Delta-G solvation = -38.370024 kcal Electronic energy + Delta-G solvation = -31135.882561 eV Core-core repulsion = 26935.027589 eV Total energy + Delta-G solvation = -4200.854973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.40528 -39.65658 -37.73629 -37.31793 -36.21156 -34.67675 -33.43081 -32.32186 -31.32642 -30.92650 -29.65922 -27.55581 -26.94334 -24.92169 -24.30808 -22.70366 -22.14449 -21.44565 -20.58241 -19.89806 -19.49582 -18.63595 -17.47100 -16.82196 -16.61366 -16.33353 -15.96405 -15.58280 -15.13537 -14.53455 -14.38783 -14.17851 -13.94889 -13.70267 -13.57698 -13.29754 -13.04786 -12.97812 -12.80001 -12.65392 -12.54496 -12.31279 -12.09727 -11.94002 -11.51812 -11.16794 -10.88513 -10.77233 -10.57507 -10.49097 -10.39405 -10.24435 -10.24362 -10.03451 -9.92303 -9.74887 -9.56687 -9.11268 -8.61660 -8.44343 -8.30014 -6.56999 -5.83305 -3.45351 1.34160 2.05148 2.51108 2.91061 3.26738 3.32236 3.38555 3.41069 3.72538 4.42187 4.52907 4.73055 4.92528 5.03233 5.20231 5.26245 5.29294 5.44176 5.49581 5.57651 5.61061 5.73478 5.78752 5.80106 5.91519 6.03908 6.08366 6.19725 6.25774 6.29768 6.37711 6.39875 6.45332 6.57535 6.58485 6.73758 6.82633 7.01413 7.11311 7.24615 7.35080 7.54865 7.60417 7.63948 7.77311 8.24686 8.39922 8.47644 9.14167 9.75058 10.36441 11.15470 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.003298 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.933756 B = 8488.376688 C = 8927.680374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.068 3.932 3 N -0.480 5.480 4 C 0.389 3.611 5 O -0.441 6.441 6 N -0.544 5.544 7 H 0.425 0.575 8 C -0.049 4.049 9 C 0.587 3.413 10 O -0.528 6.528 11 N -0.584 5.584 12 C 0.109 3.891 13 C -0.132 4.132 14 C -0.123 4.123 15 C 0.178 3.822 16 H 0.051 0.949 17 N -0.569 5.569 18 C -0.257 4.257 19 H 0.059 0.941 20 C 0.015 3.985 21 N -0.889 5.889 22 Si 0.896 3.104 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.149 3.851 27 C 0.055 3.945 28 O -0.567 6.567 29 C 0.103 3.897 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.255 0.745 41 H 0.029 0.971 42 H 0.107 0.893 43 H 0.020 0.980 44 H 0.042 0.958 45 H 0.357 0.643 46 H 0.096 0.904 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.278 13.049 -6.545 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.065 4.065 3 N -0.211 5.211 4 C 0.089 3.911 5 O -0.242 6.242 6 N -0.161 5.161 7 H 0.264 0.736 8 C -0.166 4.166 9 C 0.371 3.629 10 O -0.404 6.404 11 N -0.317 5.317 12 C -0.014 4.014 13 C -0.171 4.171 14 C -0.163 4.163 15 C 0.069 3.931 16 H 0.069 0.931 17 N -0.288 5.288 18 C -0.387 4.387 19 H 0.077 0.923 20 C -0.186 4.186 21 N -0.531 5.531 22 Si 0.725 3.275 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.023 3.977 27 C -0.025 4.025 28 O -0.370 6.370 29 C -0.020 4.020 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.261 0.739 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.124 0.876 43 H 0.039 0.961 44 H 0.060 0.940 45 H 0.201 0.799 46 H 0.114 0.886 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.167 13.660 -5.730 16.046 hybrid contribution -0.053 -1.569 -0.894 1.807 sum 6.115 12.091 -6.624 15.082 Atomic orbital electron populations 1.20196 0.86454 1.03440 1.03192 1.20746 0.96501 0.86037 1.03215 1.70150 0.98564 1.30265 1.22103 1.20050 0.87295 0.78526 1.05263 1.84845 1.43497 1.61593 1.34260 1.43558 1.08515 1.07698 1.56353 0.73612 1.20716 0.83621 0.95613 1.16643 1.16782 0.78713 0.83460 0.83987 1.90868 1.55283 1.61942 1.32293 1.48187 1.59965 1.16185 1.07341 1.21760 1.01428 0.94385 0.83799 1.21953 0.99574 0.97805 0.97739 1.21964 1.01278 0.93100 0.99932 1.20506 0.94945 0.86345 0.91263 0.93061 1.43601 1.07540 0.98456 1.79209 1.18907 0.83207 1.14360 1.22177 0.92297 1.25210 0.97223 1.01042 0.95105 1.69916 1.33791 1.26186 1.23210 0.86489 0.85373 0.78200 0.77402 1.20928 1.21672 1.20659 1.21096 0.93222 0.93062 0.90362 1.23133 0.96118 0.88455 0.94812 1.86593 1.83761 1.47546 1.19077 1.22443 0.98263 0.78226 1.03069 0.90365 0.90356 0.90685 0.73941 0.90894 0.90955 0.92516 0.91318 0.91273 0.91871 0.93445 0.95256 0.87601 0.96148 0.93985 0.79884 0.88573 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.23 36.01 0.37 -0.46 16 2 C 0.07 0.90 6.87 -82.54 -0.57 0.33 16 3 N -0.48 -6.46 11.22 -10.83 -0.12 -6.59 16 4 C 0.39 4.45 9.43 -89.60 -0.84 3.61 16 5 O -0.44 -3.74 13.62 -17.32 -0.24 -3.98 16 6 N -0.54 -6.15 6.24 -10.91 -0.07 -6.22 16 7 H 0.42 3.83 8.96 -40.82 -0.37 3.47 16 8 C -0.05 -0.67 5.01 -81.98 -0.41 -1.08 16 9 C 0.59 9.59 7.15 -12.99 -0.09 9.50 16 10 O -0.53 -10.45 16.53 5.16 0.09 -10.36 16 11 N -0.58 -9.34 2.97 -174.41 -0.52 -9.86 16 12 C 0.11 1.49 6.31 -3.71 -0.02 1.46 16 13 C -0.13 -1.90 6.08 -26.61 -0.16 -2.06 16 14 C -0.12 -2.29 5.12 -26.69 -0.14 -2.43 16 15 C 0.18 3.61 2.61 -67.81 -0.18 3.43 16 16 H 0.05 1.10 7.74 -51.93 -0.40 0.69 16 17 N -0.57 -13.18 2.31 -165.52 -0.38 -13.56 16 18 C -0.26 -6.43 8.19 -15.06 -0.12 -6.55 16 19 H 0.06 1.49 6.76 -52.48 -0.35 1.13 16 20 C 0.01 0.37 5.03 -17.43 -0.09 0.29 16 21 N -0.89 -23.91 11.40 55.49 0.63 -23.28 16 22 Si 0.90 20.48 29.60 -169.99 -5.03 15.45 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.15 3.38 5.70 -4.04 -0.02 3.36 16 27 C 0.05 1.08 7.37 37.16 0.27 1.36 16 28 O -0.57 -10.83 12.94 -35.23 -0.46 -11.28 16 29 C 0.10 1.95 5.77 -3.71 -0.02 1.92 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.86 7.93 -51.93 -0.41 0.44 16 33 H 0.40 1.27 9.06 45.56 0.41 1.68 16 34 H 0.07 0.92 6.19 -51.93 -0.32 0.60 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.38 7.70 -51.93 -0.40 0.98 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.03 0.65 7.84 -51.93 -0.41 0.25 16 42 H 0.11 2.66 5.53 -51.93 -0.29 2.37 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.36 5.26 9.12 45.56 0.42 5.67 16 46 H 0.10 2.04 6.50 -51.93 -0.34 1.71 16 47 H 0.07 1.39 6.81 -51.93 -0.35 1.04 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -32.21 382.60 -7.69 -39.89 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.33 Total: 11.34 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: -2.03 Total: 12.68 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.46 Total: -59.50 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.61 Total: -25.62 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.21 -7.69 -39.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316750979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.522 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds