Wall clock time and date at job start Tue Mar 31 2020 20:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33223 * 126.02098 * 2 1 4 4 C 1.31534 * 109.76080 * 180.25770 * 3 2 1 5 5 O 1.35209 * 125.48955 * 179.78395 * 4 3 2 6 6 N 1.34940 * 109.01581 * 359.76461 * 4 3 2 7 7 H 0.97005 * 126.54097 * 179.97438 * 6 4 3 8 8 C 1.36725 * 126.01481 * 179.86041 * 2 1 3 9 9 C 1.46371 * 126.82817 * 0.02562 * 8 2 1 10 10 O 1.21736 * 119.99796 * 104.20554 * 9 8 2 11 11 N 1.34772 * 120.00441 * 284.20306 * 9 8 2 12 12 C 1.46932 * 120.62869 * 355.12073 * 11 9 8 13 13 C 1.53193 * 108.77438 * 233.58541 * 12 11 9 14 14 C 1.53045 * 109.33837 * 305.37845 * 13 12 11 15 15 C 1.53039 * 109.53991 * 61.31533 * 14 13 12 16 16 H 1.09002 * 109.49691 * 58.65226 * 15 14 13 17 17 N 1.46497 * 109.49920 * 178.71487 * 15 14 13 18 18 C 1.36940 * 119.99776 * 59.93703 * 17 15 14 19 19 H 1.08006 * 119.99786 * 39.28989 * 18 17 15 20 20 C 1.38806 * 119.99935 * 219.28244 * 18 17 15 21 21 N 1.31621 * 120.00350 * 19.20796 * 20 18 17 22 22 Si 1.86803 * 120.00107 * 199.20565 * 20 18 17 23 23 H 1.48498 * 109.47203 * 60.00171 * 22 20 18 24 24 H 1.48498 * 109.46997 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46930 * 300.00306 * 22 20 18 26 26 C 1.46497 * 120.00266 * 239.93494 * 17 15 14 27 27 C 1.53003 * 109.47426 * 265.98047 * 26 17 15 28 28 O 1.42901 * 109.46790 * 65.00107 * 27 26 17 29 29 C 1.46927 * 120.63244 * 175.09074 * 11 9 8 30 30 H 1.08997 * 109.47213 * 270.14183 * 1 2 3 31 31 H 1.08993 * 109.47264 * 30.14074 * 1 2 3 32 32 H 1.09003 * 109.47089 * 150.14437 * 1 2 3 33 33 H 0.96698 * 114.00107 * 269.97666 * 5 4 3 34 34 H 1.09003 * 109.58159 * 353.36741 * 12 11 9 35 35 H 1.08995 * 109.58529 * 113.65621 * 12 11 9 36 36 H 1.09001 * 109.49717 * 65.30883 * 13 12 11 37 37 H 1.08996 * 109.50022 * 185.37831 * 13 12 11 38 38 H 1.08997 * 109.42982 * 301.31494 * 14 13 12 39 39 H 1.08992 * 109.48702 * 181.35184 * 14 13 12 40 40 H 0.96995 * 120.00710 * 179.97438 * 21 20 18 41 41 H 1.09004 * 109.47007 * 25.98136 * 26 17 15 42 42 H 1.09004 * 109.47350 * 145.98178 * 26 17 15 43 43 H 1.08995 * 109.46974 * 184.99753 * 27 26 17 44 44 H 1.08998 * 109.46981 * 305.00188 * 27 26 17 45 45 H 0.96701 * 113.99425 * 180.02562 * 28 27 26 46 46 H 1.08993 * 109.58960 * 6.63040 * 29 11 9 47 47 H 1.09002 * 109.70311 * 246.27208 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2905 1.0775 0.0000 4 6 3.5532 0.7092 -0.0056 5 8 4.6150 1.5463 -0.0114 6 7 3.6181 -0.6386 -0.0041 7 1 4.4243 -1.1780 -0.0076 8 6 2.3110 -1.1059 0.0027 9 6 1.8792 -2.5045 0.0056 10 8 1.9472 -3.1646 -1.0150 11 7 1.4063 -3.0615 1.1380 12 6 1.4172 -2.3123 2.4020 13 6 2.1295 -3.1522 3.4669 14 6 1.4634 -4.5272 3.5570 15 6 1.5879 -5.2454 2.2114 16 1 2.6411 -5.3475 1.9495 17 7 0.9772 -6.5735 2.3076 18 6 -0.3488 -6.6958 2.6272 19 1 -1.0685 -6.0005 2.2209 20 6 -0.7678 -7.7134 3.4731 21 7 0.0999 -8.3155 4.2586 22 14 -2.5633 -8.2284 3.4969 23 1 -2.9614 -8.6984 2.1457 24 1 -2.7502 -9.3268 4.4786 25 1 -3.4057 -7.0689 3.8857 26 6 1.7848 -7.7708 2.0620 27 6 1.6433 -8.1898 0.5972 28 8 2.2016 -7.1782 -0.2436 29 6 0.8696 -4.4292 1.1321 30 1 -0.3633 0.0025 1.0276 31 1 -0.3633 0.8886 -0.5160 32 1 -0.3633 -0.8913 -0.5116 33 1 4.9199 1.7887 -0.8964 34 1 1.9484 -1.3705 2.2638 35 1 0.3931 -2.1116 2.7166 36 1 3.1777 -3.2735 3.1935 37 1 2.0610 -2.6503 4.4320 38 1 0.4096 -4.4039 3.8066 39 1 1.9530 -5.1183 4.3308 40 1 -0.1930 -9.0264 4.8500 41 1 2.8309 -7.5541 2.2785 42 1 1.4405 -8.5799 2.7062 43 1 2.1719 -9.1292 0.4354 44 1 0.5882 -8.3205 0.3570 45 1 2.1462 -7.3773 -1.1883 46 1 1.0393 -4.8842 0.1564 47 1 -0.1995 -4.4054 1.3432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316750979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:27 Heat of formation + Delta-G solvation = -66.249837 kcal Electronic energy + Delta-G solvation = -31137.091521 eV Core-core repulsion = 26935.027589 eV Total energy + Delta-G solvation = -4202.063932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.35726 -40.98649 -39.01664 -38.33652 -37.73476 -36.31414 -34.34293 -33.90331 -32.94351 -32.04376 -31.14002 -29.05595 -28.24346 -26.19097 -26.08247 -23.85181 -23.47633 -22.60269 -22.12103 -21.25929 -20.58105 -19.71876 -18.56344 -18.41626 -18.03120 -17.77476 -17.09887 -16.81493 -16.65964 -16.25656 -15.85782 -15.42744 -15.26883 -15.12327 -14.95211 -14.59661 -14.44133 -14.28431 -14.02078 -13.78457 -13.62291 -13.50860 -13.42610 -13.22115 -13.00372 -12.89692 -12.67452 -12.39171 -12.14744 -12.01377 -11.91851 -11.69849 -11.65127 -11.46924 -11.22967 -11.16558 -11.00368 -10.69784 -10.52462 -9.74128 -9.41155 -8.46385 -7.76739 -5.42628 0.39801 1.00778 1.49356 1.51806 1.52461 1.57576 1.81982 2.08846 2.54241 2.87440 3.28630 3.45876 3.55651 3.75163 3.86767 4.00961 4.05536 4.07763 4.16206 4.33802 4.45352 4.56150 4.60794 4.62710 4.63595 4.76647 4.79777 4.85660 4.87272 4.91952 4.95312 4.99616 5.05206 5.20364 5.27222 5.41673 5.43196 5.52493 5.63024 5.67055 5.79715 5.80226 6.31574 6.52121 6.65156 6.71389 6.95871 7.04535 7.21572 7.87275 8.45375 9.18338 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017059 B = 0.003298 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.933756 B = 8488.376688 C = 8927.680374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.073 3.927 3 N -0.506 5.506 4 C 0.411 3.589 5 O -0.440 6.440 6 N -0.537 5.537 7 H 0.434 0.566 8 C -0.072 4.072 9 C 0.594 3.406 10 O -0.568 6.568 11 N -0.582 5.582 12 C 0.112 3.888 13 C -0.121 4.121 14 C -0.113 4.113 15 C 0.180 3.820 16 H 0.038 0.962 17 N -0.581 5.581 18 C -0.254 4.254 19 H 0.056 0.944 20 C -0.028 4.028 21 N -0.916 5.916 22 Si 0.950 3.050 23 H -0.282 1.282 24 H -0.296 1.296 25 H -0.275 1.275 26 C 0.147 3.853 27 C 0.068 3.932 28 O -0.578 6.578 29 C 0.121 3.879 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.429 0.571 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.251 0.749 41 H 0.024 0.976 42 H 0.082 0.918 43 H 0.046 0.954 44 H 0.028 0.972 45 H 0.379 0.621 46 H 0.072 0.928 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 15.272 -6.896 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.060 4.060 3 N -0.237 5.237 4 C 0.109 3.891 5 O -0.245 6.245 6 N -0.155 5.155 7 H 0.275 0.725 8 C -0.189 4.189 9 C 0.380 3.620 10 O -0.447 6.447 11 N -0.314 5.314 12 C -0.010 4.010 13 C -0.160 4.160 14 C -0.153 4.153 15 C 0.072 3.928 16 H 0.056 0.944 17 N -0.301 5.301 18 C -0.384 4.384 19 H 0.073 0.927 20 C -0.226 4.226 21 N -0.560 5.560 22 Si 0.779 3.221 23 H -0.209 1.209 24 H -0.222 1.222 25 H -0.201 1.201 26 C 0.020 3.980 27 C -0.011 4.011 28 O -0.384 6.384 29 C -0.003 4.003 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.291 0.709 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.114 0.886 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.100 0.900 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.226 0.774 46 H 0.091 0.909 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.565 15.918 -6.110 18.271 hybrid contribution -0.037 -2.154 -0.848 2.316 sum 6.528 13.764 -6.959 16.748 Atomic orbital electron populations 1.20280 0.85404 1.03608 1.04143 1.21047 0.97318 0.85735 1.01868 1.70195 0.99411 1.30399 1.23743 1.20128 0.87553 0.78695 1.02721 1.84812 1.42336 1.60727 1.36593 1.43467 1.08123 1.07834 1.56066 0.72466 1.20211 0.84891 0.94063 1.19698 1.17017 0.77644 0.84220 0.83135 1.90841 1.56805 1.63363 1.33701 1.48149 1.59599 1.15132 1.08485 1.21900 1.02474 0.94457 0.82136 1.21878 0.99220 0.95340 0.99551 1.21791 1.00450 0.95195 0.97842 1.20537 0.94026 0.85583 0.92614 0.94363 1.43759 1.07267 0.99615 1.79500 1.19030 0.84060 1.14008 1.21306 0.92656 1.25771 1.00178 1.01448 0.95178 1.70042 1.35142 1.26710 1.24108 0.85621 0.81830 0.77644 0.76998 1.20853 1.22188 1.20098 1.20990 0.92641 0.92367 0.91971 1.22806 0.95689 0.89428 0.93206 1.86535 1.83524 1.47588 1.20772 1.21949 0.97491 0.79773 1.01050 0.88973 0.89190 0.91496 0.70865 0.88940 0.89625 0.92190 0.88641 0.92784 0.94352 0.93949 0.95737 0.90013 0.93608 0.95381 0.77438 0.90931 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 10.23 71.24 0.73 -0.82 16 2 C 0.07 1.80 6.87 41.99 0.29 2.08 16 3 N -0.51 -12.32 11.22 -301.66 -3.38 -15.70 16 4 C 0.41 8.21 9.43 179.99 1.70 9.91 16 5 O -0.44 -5.96 13.62 -84.90 -1.16 -7.11 16 6 N -0.54 -10.90 6.24 -300.14 -1.87 -12.77 16 7 H 0.43 6.89 8.96 -92.70 -0.83 6.06 16 8 C -0.07 -1.85 5.01 39.80 0.20 -1.65 16 9 C 0.59 19.00 7.15 86.36 0.62 19.62 16 10 O -0.57 -22.61 16.53 -4.46 -0.07 -22.68 16 11 N -0.58 -18.15 2.97 -823.92 -2.45 -20.60 16 12 C 0.11 2.81 6.31 86.36 0.54 3.35 16 13 C -0.12 -3.27 6.08 30.67 0.19 -3.08 16 14 C -0.11 -4.22 5.12 30.62 0.16 -4.07 16 15 C 0.18 7.42 2.61 45.07 0.12 7.54 16 16 H 0.04 1.66 7.74 -2.39 -0.02 1.65 16 17 N -0.58 -27.59 2.31 -677.59 -1.57 -29.15 16 18 C -0.25 -12.92 8.19 84.03 0.69 -12.24 16 19 H 0.06 2.83 6.76 -2.91 -0.02 2.81 16 20 C -0.03 -1.47 5.03 84.86 0.43 -1.04 16 21 N -0.92 -50.47 11.40 21.65 0.25 -50.22 16 22 Si 0.95 42.51 29.60 68.60 2.03 44.54 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 C 0.15 6.82 5.70 86.38 0.49 7.32 16 27 C 0.07 2.72 7.37 71.98 0.53 3.25 16 28 O -0.58 -21.95 12.94 -148.98 -1.93 -23.88 16 29 C 0.12 4.65 5.77 86.36 0.50 5.15 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.45 7.93 -2.39 -0.02 1.43 16 33 H 0.43 1.13 9.06 -74.06 -0.67 0.46 16 34 H 0.09 2.04 6.19 -2.39 -0.01 2.03 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 2.17 7.70 -2.39 -0.02 2.15 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 41 H 0.02 1.12 7.84 -2.39 -0.02 1.10 16 42 H 0.08 4.25 5.53 -2.38 -0.01 4.24 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.38 10.81 9.12 -74.06 -0.68 10.14 16 46 H 0.07 3.15 6.50 -2.39 -0.02 3.14 16 47 H 0.06 2.43 6.81 -2.39 -0.02 2.42 16 Total: -1.00 -70.40 382.60 -4.12 -74.52 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -1.14 Total: 27.74 kcal Atomic # 6 Polarization: 28.15 SS G_CDS: 7.17 Total: 35.32 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -9.03 Total: -128.45 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -3.16 Total: -53.68 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -70.40 -4.12 -74.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316750979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.271 kcal (2) G-P(sol) polarization free energy of solvation -70.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds