Wall clock time and date at job start Tue Mar 31 2020 20:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33226 * 126.01695 * 2 1 4 4 C 1.31537 * 109.75667 * 180.02562 * 3 2 1 5 5 O 1.35213 * 125.48667 * 179.97438 * 4 3 2 6 6 N 1.34943 * 109.01978 * 359.77068 * 4 3 2 7 7 H 0.96994 * 126.55073 * 180.26211 * 6 4 3 8 8 C 1.36721 * 126.01777 * 180.02562 * 2 1 3 9 9 C 1.46380 * 126.82504 * 359.93959 * 8 2 1 10 10 O 1.21731 * 119.99924 * 256.73963 * 9 8 2 11 11 N 1.34774 * 119.99798 * 76.74349 * 9 8 2 12 12 C 1.46927 * 120.63157 * 355.68209 * 11 9 8 13 13 C 1.53187 * 108.77291 * 126.37173 * 12 11 9 14 14 C 1.53037 * 109.34452 * 54.61966 * 13 12 11 15 15 C 1.53035 * 109.53758 * 298.68414 * 14 13 12 16 16 H 1.09006 * 109.49672 * 301.34841 * 15 14 13 17 17 N 1.46504 * 109.49849 * 181.28381 * 15 14 13 18 18 C 1.36930 * 119.99566 * 304.16800 * 17 15 14 19 19 H 1.07996 * 120.00388 * 38.16274 * 18 17 15 20 20 C 1.38817 * 119.99884 * 218.43338 * 18 17 15 21 21 N 1.31617 * 119.99792 * 17.54543 * 20 18 17 22 22 Si 1.86801 * 120.00049 * 197.53957 * 20 18 17 23 23 H 1.48506 * 109.46576 * 90.00470 * 22 20 18 24 24 H 1.48497 * 109.47114 * 210.00139 * 22 20 18 25 25 H 1.48500 * 109.47176 * 330.00668 * 22 20 18 26 26 C 1.46504 * 119.99945 * 124.17062 * 17 15 14 27 27 C 1.52992 * 109.46947 * 269.99865 * 26 17 15 28 28 O 1.42899 * 109.47373 * 65.00351 * 27 26 17 29 29 C 1.46928 * 120.62764 * 175.65853 * 11 9 8 30 30 H 1.09002 * 109.47458 * 269.97169 * 1 2 3 31 31 H 1.08997 * 109.47423 * 29.97328 * 1 2 3 32 32 H 1.09001 * 109.47110 * 149.97348 * 1 2 3 33 33 H 0.96700 * 113.99237 * 90.03139 * 5 4 3 34 34 H 1.09000 * 109.58025 * 246.15822 * 12 11 9 35 35 H 1.09002 * 109.58544 * 6.58135 * 12 11 9 36 36 H 1.09003 * 109.49513 * 174.58740 * 13 12 11 37 37 H 1.08993 * 109.50001 * 294.64633 * 13 12 11 38 38 H 1.09001 * 109.48759 * 178.64430 * 14 13 12 39 39 H 1.09000 * 109.43082 * 58.68150 * 14 13 12 40 40 H 0.96997 * 120.00321 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.47202 * 30.00345 * 26 17 15 42 42 H 1.09002 * 109.46950 * 149.99854 * 26 17 15 43 43 H 1.08999 * 109.46971 * 185.00067 * 27 26 17 44 44 H 1.09002 * 109.47159 * 305.00409 * 27 26 17 45 45 H 0.96700 * 114.00307 * 180.02562 * 28 27 26 46 46 H 1.08997 * 109.58252 * 113.84324 * 29 11 9 47 47 H 1.08997 * 109.70638 * 353.49022 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7093 -0.0006 5 8 4.6150 1.5464 -0.0012 6 7 3.6182 -0.6386 0.0042 7 1 4.4242 -1.1780 0.0085 8 6 2.3110 -1.1058 -0.0005 9 6 1.8792 -2.5045 0.0001 10 8 1.9316 -3.1572 1.0263 11 7 1.4237 -3.0696 -1.1355 12 6 1.2656 -2.2704 -2.3582 13 6 2.0252 -2.9571 -3.4976 14 6 1.5455 -4.4046 -3.6266 15 6 1.8379 -5.1583 -2.3272 16 1 2.9079 -5.1272 -2.1214 17 7 1.4062 -6.5518 -2.4624 18 6 0.1121 -6.8372 -2.8071 19 1 -0.4024 -6.2219 -3.5303 20 6 -0.5404 -7.9141 -2.2227 21 7 -0.0710 -8.4449 -1.1136 22 14 -2.0849 -8.6096 -3.0103 23 1 -1.7118 -9.6772 -3.9728 24 1 -2.9646 -9.1778 -1.9574 25 1 -2.8058 -7.5270 -3.7267 26 6 2.3591 -7.6398 -2.2288 27 6 3.0576 -7.9967 -3.5424 28 8 3.8481 -6.8889 -3.9779 29 6 1.0763 -4.4967 -1.1744 30 1 -0.3634 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 4.9245 1.7896 0.8820 34 1 0.2085 -2.1996 -2.6142 35 1 1.6725 -1.2720 -2.1973 36 1 1.8373 -2.4270 -4.4314 37 1 3.0934 -2.9457 -3.2815 38 1 2.0672 -4.8884 -4.4523 39 1 0.4727 -4.4153 -3.8190 40 1 -0.5271 -9.1971 -0.7049 41 1 3.1018 -7.3215 -1.4972 42 1 1.8278 -8.5132 -1.8508 43 1 3.7003 -8.8634 -3.3882 44 1 2.3094 -8.2294 -4.3002 45 1 4.3203 -7.0446 -4.8073 46 1 0.0037 -4.6073 -1.3339 47 1 1.3562 -4.9689 -0.2327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316750980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:32 Heat of formation + Delta-G solvation = -67.178923 kcal Electronic energy + Delta-G solvation = -31063.139289 eV Core-core repulsion = 26861.035069 eV Total energy + Delta-G solvation = -4202.104220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.38449 -41.01542 -39.05571 -38.35349 -37.73168 -36.32888 -34.36520 -33.94755 -32.89944 -32.09333 -31.10395 -29.10435 -28.26428 -26.25936 -26.00321 -23.88403 -23.55628 -22.53930 -22.10346 -21.29109 -20.58589 -19.75516 -18.59478 -18.41225 -17.99184 -17.79496 -17.17448 -16.79824 -16.68762 -16.26798 -15.85502 -15.41933 -15.22732 -15.06223 -15.02288 -14.87061 -14.33956 -14.19261 -14.11614 -13.86136 -13.66235 -13.48497 -13.43275 -13.06572 -12.93484 -12.84064 -12.79898 -12.33972 -12.24496 -12.08575 -11.88373 -11.74278 -11.57367 -11.50786 -11.22263 -11.17982 -11.03370 -10.69508 -10.52189 -9.75151 -9.42756 -8.49776 -7.77743 -5.43154 0.38560 0.94889 1.48838 1.50961 1.51892 1.59067 1.78967 2.06426 2.53733 2.85661 3.29178 3.43172 3.55941 3.77329 3.84620 3.98367 4.07522 4.08716 4.15269 4.34829 4.46733 4.55615 4.59082 4.62931 4.65289 4.72374 4.75665 4.86574 4.87369 4.91627 4.94248 4.99143 5.09042 5.21364 5.28202 5.40606 5.43623 5.53656 5.61934 5.67858 5.77599 5.80940 6.28725 6.51588 6.63435 6.69406 6.92015 7.08891 7.20678 7.87200 8.44261 9.18582 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.003389 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.741251 B = 8259.813470 C = 9001.688383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.074 3.926 3 N -0.504 5.504 4 C 0.412 3.588 5 O -0.439 6.439 6 N -0.537 5.537 7 H 0.434 0.566 8 C -0.072 4.072 9 C 0.590 3.410 10 O -0.577 6.577 11 N -0.583 5.583 12 C 0.107 3.893 13 C -0.119 4.119 14 C -0.109 4.109 15 C 0.181 3.819 16 H 0.041 0.959 17 N -0.581 5.581 18 C -0.251 4.251 19 H 0.065 0.935 20 C -0.036 4.036 21 N -0.922 5.922 22 Si 0.956 3.044 23 H -0.286 1.286 24 H -0.300 1.300 25 H -0.267 1.267 26 C 0.144 3.856 27 C 0.073 3.927 28 O -0.578 6.578 29 C 0.120 3.880 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.430 0.570 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.250 0.750 41 H 0.015 0.985 42 H 0.084 0.916 43 H 0.045 0.955 44 H 0.032 0.968 45 H 0.381 0.619 46 H 0.060 0.940 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.883 16.033 -3.639 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 N -0.235 5.235 4 C 0.110 3.890 5 O -0.244 6.244 6 N -0.154 5.154 7 H 0.275 0.725 8 C -0.189 4.189 9 C 0.377 3.623 10 O -0.457 6.457 11 N -0.314 5.314 12 C -0.015 4.015 13 C -0.158 4.158 14 C -0.149 4.149 15 C 0.073 3.927 16 H 0.059 0.941 17 N -0.301 5.301 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.233 4.233 21 N -0.567 5.567 22 Si 0.785 3.215 23 H -0.212 1.212 24 H -0.227 1.227 25 H -0.192 1.192 26 C 0.018 3.982 27 C -0.007 4.007 28 O -0.384 6.384 29 C -0.004 4.004 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.291 0.709 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.033 0.967 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.228 0.772 46 H 0.078 0.922 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.388 16.668 -3.059 18.487 hybrid contribution 0.365 -2.310 0.186 2.346 sum 7.753 14.358 -2.873 16.569 Atomic orbital electron populations 1.20314 0.85363 1.04187 1.03748 1.21051 0.97327 0.85695 1.01846 1.70204 0.99348 1.30254 1.23707 1.20136 0.87599 0.78612 1.02616 1.84817 1.42265 1.60647 1.36622 1.43448 1.08029 1.07909 1.56052 0.72512 1.20140 0.85035 0.93907 1.19788 1.17131 0.77697 0.84391 0.83130 1.90849 1.57265 1.64255 1.33288 1.48256 1.62501 1.10262 1.10388 1.22020 1.02092 0.94451 0.82926 1.21849 0.99647 0.95476 0.98818 1.21710 1.00789 0.94615 0.97743 1.20605 0.94737 0.84756 0.92573 0.94095 1.43852 1.06905 0.99478 1.79868 1.19217 0.89524 1.12588 1.16821 0.91791 1.25886 1.00177 1.01902 0.95374 1.70046 1.42248 1.25977 1.18396 0.85452 0.80060 0.78621 0.77414 1.21245 1.22720 1.19187 1.21017 0.90133 0.94536 0.92558 1.22732 0.92304 0.87705 0.97911 1.86509 1.65566 1.41312 1.45008 1.22082 1.00065 0.78082 1.00196 0.90107 0.88454 0.90880 0.70861 0.89550 0.88739 0.88081 0.92239 0.92152 0.92778 0.94025 0.96663 0.89857 0.93729 0.94970 0.77168 0.92197 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 10.23 71.24 0.73 -0.92 16 2 C 0.07 1.88 6.43 41.99 0.27 2.15 16 3 N -0.50 -12.55 11.22 -301.65 -3.38 -15.94 16 4 C 0.41 8.54 9.43 179.99 1.70 10.23 16 5 O -0.44 -6.15 13.62 -84.94 -1.16 -7.31 16 6 N -0.54 -11.57 6.24 -300.12 -1.87 -13.44 16 7 H 0.43 7.49 8.96 -92.71 -0.83 6.66 16 8 C -0.07 -1.97 5.23 39.80 0.21 -1.76 16 9 C 0.59 20.47 7.15 86.36 0.62 21.09 16 10 O -0.58 -25.36 16.54 -4.45 -0.07 -25.43 16 11 N -0.58 -19.34 2.97 -823.95 -2.45 -21.78 16 12 C 0.11 2.67 5.98 86.36 0.52 3.19 16 13 C -0.12 -2.97 6.08 30.67 0.19 -2.79 16 14 C -0.11 -3.66 5.02 30.62 0.15 -3.51 16 15 C 0.18 7.42 2.37 45.07 0.11 7.53 16 16 H 0.04 1.77 7.83 -2.38 -0.02 1.75 16 17 N -0.58 -27.53 2.33 -677.60 -1.58 -29.11 16 18 C -0.25 -12.73 8.24 84.04 0.69 -12.04 16 19 H 0.06 3.19 6.73 -2.91 -0.02 3.17 16 20 C -0.04 -1.92 5.05 84.86 0.43 -1.49 16 21 N -0.92 -52.22 11.29 21.65 0.24 -51.97 16 22 Si 0.96 42.78 29.59 68.60 2.03 44.81 16 23 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 C 0.14 6.74 5.65 86.38 0.49 7.22 16 27 C 0.07 2.77 7.39 71.98 0.53 3.30 16 28 O -0.58 -19.47 13.21 -148.98 -1.97 -21.44 16 29 C 0.12 5.03 5.80 86.36 0.50 5.53 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.56 7.58 -2.39 -0.02 1.55 16 33 H 0.43 1.36 9.06 -74.06 -0.67 0.69 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.09 2.11 5.82 -2.39 -0.01 2.10 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.05 1.91 6.94 -2.39 -0.02 1.89 16 40 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 41 H 0.01 0.72 7.96 -2.39 -0.02 0.70 16 42 H 0.08 4.41 5.42 -2.39 -0.01 4.40 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.38 8.71 9.12 -74.06 -0.68 8.04 16 46 H 0.06 2.71 7.61 -2.39 -0.02 2.69 16 47 H 0.05 2.29 7.04 -2.39 -0.02 2.27 16 Total: -1.00 -72.91 381.90 -4.22 -77.13 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: -1.14 Total: 26.76 kcal Atomic # 6 Polarization: 30.61 SS G_CDS: 7.13 Total: 37.73 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -9.04 Total: -132.25 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -3.20 Total: -54.18 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -72.91 -4.22 -77.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316750980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.950 kcal (2) G-P(sol) polarization free energy of solvation -72.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds