Wall clock time and date at job start Tue Mar 31 2020 21:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50706 * 110.21604 * 2 1 4 4 O 1.21288 * 119.99705 * 94.52427 * 3 2 1 5 5 N 1.34771 * 120.00021 * 274.52945 * 3 2 1 6 6 C 1.46506 * 119.99858 * 180.02562 * 5 3 2 7 7 H 1.08996 * 112.84519 * 336.19188 * 6 5 3 8 8 C 1.53782 * 113.61676 * 107.50000 * 6 5 3 9 9 C 1.53774 * 87.07896 * 139.98039 * 8 6 5 10 10 H 1.09000 * 113.61723 * 89.12156 * 9 8 6 11 11 N 1.46909 * 113.69059 * 220.00809 * 9 8 6 12 12 C 1.46895 * 110.99761 * 252.53928 * 11 9 8 13 13 C 1.50700 * 109.47083 * 179.97438 * 12 11 9 14 14 O 1.21296 * 119.99650 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00112 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99880 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00149 * 0.02562 * 16 15 13 18 18 C 1.38948 * 120.00015 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00217 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00248 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46917 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46968 * 119.99972 * 20 18 16 23 23 H 1.48494 * 109.47342 * 240.00152 * 20 18 16 24 24 C 1.53777 * 87.08460 * 334.56638 * 9 8 6 25 25 C 1.54477 * 110.32385 * 121.98009 * 2 1 3 26 26 C 1.54627 * 101.76653 * 144.45577 * 25 2 1 27 27 C 1.51279 * 104.19612 * 335.20354 * 26 25 2 28 28 O 1.21286 * 124.94664 * 196.27465 * 27 26 25 29 29 N 1.34427 * 110.11609 * 16.25217 * 27 26 25 30 30 H 1.09006 * 109.47674 * 59.29650 * 1 2 3 31 31 H 1.09000 * 109.47148 * 179.29698 * 1 2 3 32 32 H 1.09001 * 109.47574 * 299.29220 * 1 2 3 33 33 H 0.97000 * 120.00595 * 359.97438 * 5 3 2 34 34 H 1.08997 * 113.61398 * 254.52993 * 8 6 5 35 35 H 1.08995 * 113.61192 * 25.43108 * 8 6 5 36 36 H 1.00899 * 110.99493 * 16.49045 * 11 9 8 37 37 H 1.09003 * 109.46999 * 299.99498 * 12 11 9 38 38 H 1.08997 * 109.47552 * 59.99999 * 12 11 9 39 39 H 0.96996 * 120.00141 * 359.97438 * 15 13 12 40 40 H 0.97001 * 120.00512 * 180.02562 * 19 18 16 41 41 H 1.09000 * 113.61428 * 270.88406 * 24 9 8 42 42 H 1.08999 * 113.61485 * 139.98243 * 24 9 8 43 43 H 1.08999 * 110.96890 * 262.57681 * 25 2 1 44 44 H 1.09006 * 110.96887 * 26.33756 * 25 2 1 45 45 H 1.08999 * 110.48508 * 216.52878 * 26 25 2 46 46 H 1.08997 * 110.60052 * 93.94031 * 26 25 2 47 47 H 0.96995 * 124.34548 * 180.43225 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.3380 1.9546 1.0471 5 7 2.1971 2.0784 -1.1635 6 6 2.7039 3.4530 -1.1635 7 1 2.5393 3.9647 -0.2153 8 6 4.1424 3.5793 -1.6923 9 6 3.6843 4.8632 -2.4039 10 1 3.7892 5.7611 -1.7950 11 7 4.2423 5.0211 -3.7537 12 6 5.2647 6.0755 -3.7807 13 6 5.8132 6.2077 -5.1781 14 8 5.3932 5.4941 -6.0644 15 7 6.7695 7.1197 -5.4432 16 6 7.2688 7.2396 -6.7143 17 1 6.8955 6.6036 -7.5034 18 6 8.2552 8.1793 -6.9875 19 7 8.7091 8.9535 -6.0276 20 14 8.9351 8.3433 -8.7197 21 1 8.2613 7.3646 -9.6106 22 1 8.6880 9.7194 -9.2203 23 1 10.3958 8.0765 -8.7055 24 6 2.2651 4.2713 -2.3894 25 6 2.0664 -0.7672 1.2288 26 6 3.3310 -1.4437 0.6506 27 6 3.0535 -1.5422 -0.8332 28 8 3.6591 -2.2526 -1.6076 29 7 2.0378 -0.7281 -1.1687 30 1 -0.3635 0.5247 -0.8836 31 1 -0.3633 -1.0276 -0.0126 32 1 -0.3634 0.5028 0.8962 33 1 1.9676 1.6462 -2.0010 34 1 4.8813 3.7534 -0.9102 35 1 4.4281 2.7796 -2.3755 36 1 4.6144 4.1477 -4.0955 37 1 4.8189 7.0217 -3.4739 38 1 6.0726 5.8158 -3.0968 39 1 7.1045 7.6911 -4.7346 40 1 9.3974 9.6098 -6.2184 41 1 2.0377 3.6608 -3.2633 42 1 1.4886 5.0041 -2.1701 43 1 2.3252 -0.0807 2.0348 44 1 1.3465 -1.5118 1.5686 45 1 3.4630 -2.4365 1.0807 46 1 4.2124 -0.8293 0.8340 47 1 1.6856 -0.6343 -2.0676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317120455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:32 Heat of formation + Delta-G solvation = -85.242860 kcal Electronic energy + Delta-G solvation = -28790.231988 eV Core-core repulsion = 24587.344457 eV Total energy + Delta-G solvation = -4202.887531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.62959 -39.97831 -38.84387 -38.02021 -36.82565 -34.77830 -33.90930 -32.71237 -31.69698 -31.34326 -31.17821 -26.97788 -25.86904 -25.67302 -24.64488 -23.76300 -22.12641 -21.24214 -20.62134 -20.09621 -19.21011 -18.47862 -17.88291 -17.24781 -16.85701 -16.08888 -15.88697 -15.53100 -15.45147 -15.05305 -14.70695 -14.58106 -14.45203 -14.32427 -14.05853 -13.86237 -13.44660 -13.29826 -13.16075 -13.11083 -12.88812 -12.83329 -12.63857 -12.16786 -11.77883 -11.67768 -11.61577 -11.56991 -11.36320 -11.10232 -11.05457 -10.91643 -10.74203 -10.34974 -10.32514 -10.23257 -9.53409 -9.53042 -9.38289 -8.47470 -8.06171 -7.96861 -6.42766 -3.83623 2.00824 2.11722 2.65664 2.77470 3.15787 3.26446 3.33752 3.66712 3.89285 3.91314 4.04356 4.09551 4.23381 4.26056 4.43028 4.46685 4.51406 4.69550 4.74384 4.80867 4.92823 5.02328 5.15783 5.21311 5.25821 5.34058 5.35185 5.41422 5.46255 5.55346 5.57973 5.73208 5.75401 5.84376 5.87221 5.98263 6.14698 6.21997 6.29594 6.42892 7.04804 7.20835 7.54503 7.60515 7.70703 7.74686 8.05377 8.59896 9.16854 9.53104 10.04276 10.74982 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020676 B = 0.001835 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.877214 B =15252.875238 C =15878.337438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.141 3.859 3 C 0.513 3.487 4 O -0.531 6.531 5 N -0.708 5.708 6 C 0.119 3.881 7 H 0.117 0.883 8 C -0.181 4.181 9 C 0.072 3.928 10 H 0.100 0.900 11 N -0.654 5.654 12 C 0.049 3.951 13 C 0.440 3.560 14 O -0.584 6.584 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.021 3.979 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.282 1.282 24 C -0.132 4.132 25 C -0.115 4.115 26 C -0.160 4.160 27 C 0.524 3.476 28 O -0.524 6.524 29 N -0.725 5.725 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.400 0.600 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.351 0.649 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.019 -16.263 18.222 29.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 C 0.296 3.704 4 O -0.406 6.406 5 N -0.357 5.357 6 C 0.014 3.986 7 H 0.135 0.865 8 C -0.222 4.222 9 C -0.040 4.040 10 H 0.118 0.882 11 N -0.285 5.285 12 C -0.083 4.083 13 C 0.225 3.775 14 O -0.469 6.469 15 N -0.200 5.200 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.171 4.171 25 C -0.153 4.153 26 C -0.200 4.200 27 C 0.310 3.690 28 O -0.399 6.399 29 N -0.383 5.383 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.235 0.765 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.172 0.828 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.226 0.774 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.128 0.872 44 H 0.112 0.888 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -17.049 -16.161 17.833 29.493 hybrid contribution 1.102 0.071 -0.801 1.364 sum -15.947 -16.090 17.032 28.342 Atomic orbital electron populations 1.22062 0.90665 1.04102 1.04067 1.21252 0.96549 0.89295 0.87895 1.20729 0.77594 0.87848 0.84193 1.90723 1.49771 1.68847 1.31277 1.45970 1.65868 1.15112 1.08792 1.22502 0.94462 0.81510 1.00085 0.86520 1.24237 0.97133 0.99662 1.01151 1.22808 0.95075 0.96346 0.89783 0.88153 1.60018 1.37054 1.11257 1.20221 1.21727 0.93690 0.96345 0.96566 1.19827 0.83519 0.84527 0.89607 1.90523 1.62034 1.46928 1.47386 1.41875 1.34039 1.32742 1.11357 1.19753 1.17758 1.18365 0.86966 0.87867 1.25274 0.97083 0.96016 0.99643 1.69617 1.29745 1.22369 1.32547 0.85795 0.78495 0.78187 0.81838 1.19212 1.20733 1.20758 1.23470 0.97926 0.98928 0.96823 1.22677 0.96690 0.99729 0.96209 1.22420 1.00203 1.04372 0.92993 1.20929 0.78648 0.78223 0.91191 1.90804 1.51331 1.40337 1.57401 1.46363 1.36812 1.44296 1.10875 0.91274 0.90276 0.89893 0.76510 0.90972 0.89475 0.82796 0.89506 0.93726 0.77446 0.91907 0.89039 0.90471 0.87181 0.88806 0.87419 0.87469 0.74882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 8.79 37.15 0.33 -0.18 16 2 C 0.14 0.77 1.13 -132.05 -0.15 0.62 16 3 C 0.51 4.24 6.74 -10.98 -0.07 4.16 16 4 O -0.53 -6.11 15.29 5.55 0.08 -6.02 16 5 N -0.71 -5.31 5.26 -53.01 -0.28 -5.59 16 6 C 0.12 1.05 4.24 -67.12 -0.28 0.77 16 7 H 0.12 1.12 7.46 -51.93 -0.39 0.73 16 8 C -0.18 -1.85 7.50 -25.92 -0.19 -2.04 16 9 C 0.07 0.80 4.18 -66.90 -0.28 0.52 16 10 H 0.10 1.06 7.87 -51.93 -0.41 0.65 16 11 N -0.65 -10.06 6.24 -107.13 -0.67 -10.73 16 12 C 0.05 0.85 6.01 -4.98 -0.03 0.82 16 13 C 0.44 10.35 7.82 -10.98 -0.09 10.26 16 14 O -0.58 -15.86 15.78 5.54 0.09 -15.77 16 15 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 16 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 17 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 20 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.13 -1.21 7.63 -25.92 -0.20 -1.41 16 25 C -0.12 -0.57 6.15 -25.10 -0.15 -0.72 16 26 C -0.16 -1.01 6.85 -26.74 -0.18 -1.19 16 27 C 0.52 4.73 8.43 -10.86 -0.09 4.64 16 28 O -0.52 -7.13 18.03 5.55 0.10 -7.03 16 29 N -0.72 -4.40 4.91 -47.68 -0.23 -4.63 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.40 2.33 8.02 -40.82 -0.33 2.00 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.94 7.83 -51.93 -0.41 0.53 16 36 H 0.35 5.66 7.90 -39.29 -0.31 5.35 16 37 H 0.09 1.38 8.13 -51.93 -0.42 0.95 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.09 0.86 8.12 -51.93 -0.42 0.43 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.11 0.65 6.91 -51.93 -0.36 0.29 16 44 H 0.09 0.27 7.92 -51.93 -0.41 -0.14 16 45 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.41 1.94 8.76 -40.82 -0.36 1.58 16 LS Contribution 392.79 15.07 5.92 5.92 Total: -1.00 -35.68 392.79 -8.01 -43.70 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -7.03 Total: 14.04 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -1.64 Total: 8.22 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.52 Total: -59.16 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: 0.27 Total: -28.82 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.68 -8.01 -43.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317120455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.547 kcal (2) G-P(sol) polarization free energy of solvation -35.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds