Wall clock time and date at job start Tue Mar 31 2020 21:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50706 * 110.21604 * 2 1 4 4 O 1.21288 * 119.99705 * 94.52427 * 3 2 1 5 5 N 1.34771 * 120.00021 * 274.52945 * 3 2 1 6 6 C 1.46506 * 119.99858 * 180.02562 * 5 3 2 7 7 H 1.08996 * 112.84519 * 336.19188 * 6 5 3 8 8 C 1.53782 * 113.61676 * 107.50000 * 6 5 3 9 9 C 1.53774 * 87.07896 * 139.98039 * 8 6 5 10 10 H 1.09000 * 113.61723 * 89.12156 * 9 8 6 11 11 N 1.46909 * 113.69059 * 220.00809 * 9 8 6 12 12 C 1.46895 * 110.99761 * 252.53928 * 11 9 8 13 13 C 1.50700 * 109.47083 * 179.97438 * 12 11 9 14 14 O 1.21296 * 119.99650 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00112 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99880 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00149 * 0.02562 * 16 15 13 18 18 C 1.38948 * 120.00015 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00217 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00248 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46917 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46968 * 119.99972 * 20 18 16 23 23 H 1.48494 * 109.47342 * 240.00152 * 20 18 16 24 24 C 1.53777 * 87.08460 * 334.56638 * 9 8 6 25 25 C 1.54477 * 110.32385 * 121.98009 * 2 1 3 26 26 C 1.54627 * 101.76653 * 144.45577 * 25 2 1 27 27 C 1.51279 * 104.19612 * 335.20354 * 26 25 2 28 28 O 1.21286 * 124.94664 * 196.27465 * 27 26 25 29 29 N 1.34427 * 110.11609 * 16.25217 * 27 26 25 30 30 H 1.09006 * 109.47674 * 59.29650 * 1 2 3 31 31 H 1.09000 * 109.47148 * 179.29698 * 1 2 3 32 32 H 1.09001 * 109.47574 * 299.29220 * 1 2 3 33 33 H 0.97000 * 120.00595 * 359.97438 * 5 3 2 34 34 H 1.08997 * 113.61398 * 254.52993 * 8 6 5 35 35 H 1.08995 * 113.61192 * 25.43108 * 8 6 5 36 36 H 1.00899 * 110.99493 * 16.49045 * 11 9 8 37 37 H 1.09003 * 109.46999 * 299.99498 * 12 11 9 38 38 H 1.08997 * 109.47552 * 59.99999 * 12 11 9 39 39 H 0.96996 * 120.00141 * 359.97438 * 15 13 12 40 40 H 0.97001 * 120.00512 * 180.02562 * 19 18 16 41 41 H 1.09000 * 113.61428 * 270.88406 * 24 9 8 42 42 H 1.08999 * 113.61485 * 139.98243 * 24 9 8 43 43 H 1.08999 * 110.96890 * 262.57681 * 25 2 1 44 44 H 1.09006 * 110.96887 * 26.33756 * 25 2 1 45 45 H 1.08999 * 110.48508 * 216.52878 * 26 25 2 46 46 H 1.08997 * 110.60052 * 93.94031 * 26 25 2 47 47 H 0.96995 * 124.34548 * 180.43225 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0507 1.4142 0.0000 4 8 2.3380 1.9546 1.0471 5 7 2.1971 2.0784 -1.1635 6 6 2.7039 3.4530 -1.1635 7 1 2.5393 3.9647 -0.2153 8 6 4.1424 3.5793 -1.6923 9 6 3.6843 4.8632 -2.4039 10 1 3.7892 5.7611 -1.7950 11 7 4.2423 5.0211 -3.7537 12 6 5.2647 6.0755 -3.7807 13 6 5.8132 6.2077 -5.1781 14 8 5.3932 5.4941 -6.0644 15 7 6.7695 7.1197 -5.4432 16 6 7.2688 7.2396 -6.7143 17 1 6.8955 6.6036 -7.5034 18 6 8.2552 8.1793 -6.9875 19 7 8.7091 8.9535 -6.0276 20 14 8.9351 8.3433 -8.7197 21 1 8.2613 7.3646 -9.6106 22 1 8.6880 9.7194 -9.2203 23 1 10.3958 8.0765 -8.7055 24 6 2.2651 4.2713 -2.3894 25 6 2.0664 -0.7672 1.2288 26 6 3.3310 -1.4437 0.6506 27 6 3.0535 -1.5422 -0.8332 28 8 3.6591 -2.2526 -1.6076 29 7 2.0378 -0.7281 -1.1687 30 1 -0.3635 0.5247 -0.8836 31 1 -0.3633 -1.0276 -0.0126 32 1 -0.3634 0.5028 0.8962 33 1 1.9676 1.6462 -2.0010 34 1 4.8813 3.7534 -0.9102 35 1 4.4281 2.7796 -2.3755 36 1 4.6144 4.1477 -4.0955 37 1 4.8189 7.0217 -3.4739 38 1 6.0726 5.8158 -3.0968 39 1 7.1045 7.6911 -4.7346 40 1 9.3974 9.6098 -6.2184 41 1 2.0377 3.6608 -3.2633 42 1 1.4886 5.0041 -2.1701 43 1 2.3252 -0.0807 2.0348 44 1 1.3465 -1.5118 1.5686 45 1 3.4630 -2.4365 1.0807 46 1 4.2124 -0.8293 0.8340 47 1 1.6856 -0.6343 -2.0676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317120455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:31 Heat of formation + Delta-G solvation = -115.431680 kcal Electronic energy + Delta-G solvation = -28791.541074 eV Core-core repulsion = 24587.344457 eV Total energy + Delta-G solvation = -4204.196617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24354 -40.81112 -40.11074 -39.40843 -37.55109 -36.15829 -35.51582 -33.75090 -33.22041 -32.23449 -31.80453 -28.49075 -26.67469 -26.45099 -25.88675 -24.77290 -22.90678 -21.86024 -21.45055 -21.08744 -20.66478 -19.91297 -19.13094 -17.97090 -17.83981 -17.33684 -16.93842 -16.60250 -16.38194 -16.23140 -16.10922 -15.74179 -15.55038 -15.21081 -14.93112 -14.88647 -14.48961 -14.38777 -14.26257 -13.62405 -13.57667 -13.53739 -13.46824 -13.37175 -13.20945 -13.14702 -12.85433 -12.43012 -12.26885 -12.17844 -12.12777 -12.02932 -11.92118 -11.80521 -11.52976 -11.45518 -11.07001 -10.36161 -10.17319 -10.11386 -10.03214 -9.27108 -8.48381 -5.97203 1.35226 1.35483 1.40838 1.43329 1.55070 2.02828 2.03850 2.21880 2.28303 2.94577 3.17120 3.18798 3.41084 3.42779 3.54729 3.62552 3.71977 3.81107 3.89375 3.97810 4.05892 4.31087 4.31785 4.45674 4.51702 4.61594 4.64285 4.74445 4.75717 4.77233 4.80274 4.95129 4.97527 5.03857 5.07042 5.09246 5.18579 5.39631 5.47978 5.62703 5.85298 5.90963 6.12399 6.36074 6.43250 6.58280 7.06747 7.10778 7.10956 7.54489 8.09585 8.69169 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020676 B = 0.001835 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.877214 B =15252.875238 C =15878.337438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.145 3.855 3 C 0.510 3.490 4 O -0.563 6.563 5 N -0.703 5.703 6 C 0.130 3.870 7 H 0.114 0.886 8 C -0.178 4.178 9 C 0.066 3.934 10 H 0.112 0.888 11 N -0.666 5.666 12 C 0.064 3.936 13 C 0.436 3.564 14 O -0.624 6.624 15 N -0.574 5.574 16 C -0.333 4.333 17 H 0.078 0.922 18 C -0.014 4.014 19 N -0.920 5.920 20 Si 0.993 3.007 21 H -0.274 1.274 22 H -0.270 1.270 23 H -0.271 1.271 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.158 4.158 27 C 0.517 3.483 28 O -0.577 6.577 29 N -0.711 5.711 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.409 0.591 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.344 0.656 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.101 0.899 47 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.290 -16.335 19.272 31.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.055 3.945 3 C 0.295 3.705 4 O -0.441 6.441 5 N -0.353 5.353 6 C 0.024 3.976 7 H 0.132 0.868 8 C -0.219 4.219 9 C -0.045 4.045 10 H 0.130 0.870 11 N -0.297 5.297 12 C -0.069 4.069 13 C 0.224 3.776 14 O -0.511 6.511 15 N -0.211 5.211 16 C -0.463 4.463 17 H 0.096 0.904 18 C -0.214 4.214 19 N -0.561 5.561 20 Si 0.817 3.183 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.196 1.196 24 C -0.160 4.160 25 C -0.147 4.147 26 C -0.198 4.198 27 C 0.305 3.695 28 O -0.457 6.457 29 N -0.368 5.368 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.164 0.836 37 H 0.125 0.875 38 H 0.082 0.918 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.122 0.878 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.119 0.881 47 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -18.362 -16.205 18.911 30.941 hybrid contribution 1.458 0.100 -1.086 1.821 sum -16.904 -16.105 17.824 29.374 Atomic orbital electron populations 1.22088 0.88405 1.05356 1.04673 1.21334 0.98024 0.87398 0.87735 1.21216 0.76850 0.88747 0.83653 1.90713 1.51201 1.69820 1.32380 1.45934 1.65354 1.14703 1.09266 1.22292 0.93384 0.82189 0.99724 0.86816 1.24168 0.97995 0.98923 1.00777 1.22985 0.96195 0.97345 0.87937 0.86994 1.60060 1.36257 1.10421 1.22988 1.21598 0.94817 0.98151 0.92288 1.20937 0.82147 0.82762 0.91768 1.90489 1.62997 1.48080 1.49536 1.41951 1.34798 1.33573 1.10754 1.19696 1.19412 1.19385 0.87797 0.90365 1.26058 0.96707 0.95164 1.03468 1.69673 1.29898 1.22452 1.34070 0.84864 0.78021 0.78296 0.77106 1.19819 1.19534 1.19604 1.23380 0.96881 0.98940 0.96801 1.22736 0.96497 0.99934 0.95534 1.22451 1.00725 1.05358 0.91257 1.21384 0.78444 0.77673 0.91991 1.90774 1.53246 1.42739 1.58907 1.46327 1.35787 1.43091 1.11611 0.90526 0.88703 0.89488 0.75447 0.91302 0.90204 0.83605 0.87510 0.91750 0.76946 0.91277 0.89101 0.89289 0.87842 0.86061 0.85928 0.88124 0.74099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 8.79 71.98 0.63 0.06 16 2 C 0.15 1.30 1.13 3.31 0.00 1.31 16 3 C 0.51 7.69 6.74 87.66 0.59 8.28 16 4 O -0.56 -12.35 15.29 -3.05 -0.05 -12.39 16 5 N -0.70 -9.51 5.26 -440.02 -2.32 -11.82 16 6 C 0.13 2.09 4.24 45.52 0.19 2.29 16 7 H 0.11 2.00 7.46 -2.39 -0.02 1.98 16 8 C -0.18 -3.45 7.50 31.12 0.23 -3.21 16 9 C 0.07 1.38 4.18 45.44 0.19 1.57 16 10 H 0.11 2.11 7.87 -2.39 -0.02 2.09 16 11 N -0.67 -19.92 6.24 -492.86 -3.08 -22.99 16 12 C 0.06 2.14 6.01 85.56 0.51 2.65 16 13 C 0.44 20.77 7.82 87.66 0.69 21.45 16 14 O -0.62 -34.70 15.78 -3.08 -0.05 -34.75 16 15 N -0.57 -29.58 5.29 -306.98 -1.62 -31.20 16 16 C -0.33 -19.08 9.68 84.04 0.81 -18.26 16 17 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 18 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 19 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 20 Si 0.99 43.22 29.55 68.60 2.03 45.24 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 C -0.12 -2.00 7.63 31.12 0.24 -1.76 16 25 C -0.11 -0.85 6.15 31.65 0.19 -0.66 16 26 C -0.16 -1.82 6.85 30.59 0.21 -1.61 16 27 C 0.52 9.09 8.43 87.90 0.74 9.83 16 28 O -0.58 -16.03 18.03 -3.05 -0.05 -16.09 16 29 N -0.71 -7.68 4.91 -423.35 -2.08 -9.76 16 30 H 0.08 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.41 4.10 8.02 -92.71 -0.74 3.36 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.68 7.83 -2.39 -0.02 1.66 16 36 H 0.34 11.06 7.90 -89.69 -0.71 10.36 16 37 H 0.11 3.19 8.13 -2.39 -0.02 3.17 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 40 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.09 1.55 8.12 -2.39 -0.02 1.53 16 42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.10 1.05 6.91 -2.39 -0.02 1.03 16 44 H 0.12 0.31 7.92 -2.38 -0.02 0.29 16 45 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.42 3.37 8.76 -92.71 -0.81 2.56 16 Total: -1.00 -78.75 392.79 -3.18 -81.93 By element: Atomic # 1 Polarization: 41.71 SS G_CDS: -1.95 Total: 39.76 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: 5.71 Total: 21.63 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -8.81 Total: -125.33 kcal Atomic # 8 Polarization: -63.08 SS G_CDS: -0.15 Total: -63.23 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -78.75 -3.18 -81.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317120455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.504 kcal (2) G-P(sol) polarization free energy of solvation -78.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds