Wall clock time and date at job start Tue Mar 31 2020 20:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29934 * 125.37824 * 2 1 4 4 C 1.36059 * 108.48127 * 179.97438 * 3 2 1 5 5 C 1.47419 * 126.45311 * 179.97438 * 4 3 2 6 6 O 1.21610 * 120.00120 * 180.02562 * 5 4 3 7 7 N 1.34782 * 119.99976 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99886 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46762 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.47297 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.46752 * 54.99914 * 10 9 8 12 12 C 1.52995 * 109.47199 * 174.99880 * 10 9 8 13 13 N 1.46900 * 109.47064 * 295.00409 * 10 9 8 14 14 C 1.46894 * 111.00054 * 154.99934 * 13 10 9 15 15 C 1.50704 * 109.46928 * 179.97438 * 14 13 10 16 16 O 1.21294 * 120.00139 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00087 * 179.97438 * 15 14 13 18 18 C 1.37098 * 120.00519 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99698 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00424 * 179.97438 * 18 17 15 21 21 N 1.31417 * 119.99812 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00167 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47098 * 90.00416 * 22 20 18 24 24 H 1.48498 * 109.47126 * 210.00637 * 22 20 18 25 25 H 1.48502 * 109.47134 * 330.00607 * 22 20 18 26 26 C 1.36092 * 107.10283 * 359.97438 * 4 3 2 27 27 C 1.50697 * 126.53050 * 180.02562 * 26 4 3 28 28 O 1.34047 * 125.38014 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47541 * 90.00330 * 1 2 3 30 30 H 1.09000 * 109.47521 * 210.00404 * 1 2 3 31 31 H 1.08998 * 109.47339 * 330.00344 * 1 2 3 32 32 H 0.96999 * 119.99524 * 0.02562 * 7 5 4 33 33 H 1.09004 * 109.46769 * 299.99722 * 8 7 5 34 34 H 1.09000 * 109.47350 * 59.99852 * 8 7 5 35 35 H 1.08996 * 109.47362 * 299.99677 * 9 8 7 36 36 H 1.09000 * 109.47356 * 59.99798 * 9 8 7 37 37 H 1.08997 * 109.47251 * 299.99813 * 12 10 9 38 38 H 1.09003 * 109.47240 * 60.00334 * 12 10 9 39 39 H 1.09001 * 109.46915 * 180.02562 * 12 10 9 40 40 H 1.00903 * 111.00175 * 31.03489 * 13 10 9 41 41 H 1.08997 * 109.46964 * 299.99244 * 14 13 10 42 42 H 1.08993 * 109.47568 * 59.99576 * 14 13 10 43 43 H 0.97011 * 120.00248 * 0.02562 * 17 15 14 44 44 H 0.97004 * 119.99962 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.47298 * 179.97438 * 27 26 4 46 46 H 1.09002 * 109.46812 * 299.97582 * 27 26 4 47 47 H 1.09002 * 109.46910 * 59.97325 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5611 0.6640 0.0006 5 6 4.7438 1.5439 0.0003 6 8 5.8603 1.0620 0.0004 7 7 4.5877 2.8827 -0.0002 8 6 5.7631 3.7572 -0.0011 9 6 5.3112 5.2188 -0.0008 10 6 6.5386 6.1323 -0.0011 11 1 7.1817 5.8763 -0.8431 12 6 6.0899 7.5895 -0.1265 13 7 7.2814 5.9548 1.2539 14 6 8.6964 6.3099 1.0828 15 6 9.4242 6.1162 2.3882 16 8 8.8231 5.7216 3.3650 17 7 10.7430 6.3814 2.4703 18 6 11.4051 6.2057 3.6579 19 1 10.8699 5.8544 4.5276 20 6 12.7649 6.4786 3.7423 21 7 13.4163 6.9056 2.6838 22 14 13.6671 6.2385 5.3603 23 1 14.1939 4.8520 5.4323 24 1 14.7943 7.2015 5.4461 25 1 12.7302 6.4713 6.4887 26 6 3.5660 -0.6970 0.0015 27 6 4.7801 -1.5896 0.0030 28 8 2.2831 -1.0929 0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 3.6972 3.2671 0.0001 33 1 6.3617 3.5621 0.8888 34 1 6.3609 3.5615 -0.8912 35 1 4.7123 5.4142 -0.8903 36 1 4.7136 5.4142 0.8896 37 1 5.5389 7.7212 -1.0577 38 1 5.4468 7.8455 0.7156 39 1 6.9644 8.2402 -0.1272 40 1 7.1843 5.0124 1.6013 41 1 9.1416 5.6712 0.3200 42 1 8.7748 7.3524 0.7748 43 1 11.2238 6.6973 1.6891 44 1 14.3656 7.0965 2.7428 45 1 4.4641 -2.6328 0.0039 46 1 5.3776 -1.3917 -0.8870 47 1 5.3768 -1.3899 0.8930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317408140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:14 Heat of formation + Delta-G solvation = -92.534668 kcal Electronic energy + Delta-G solvation = -28257.328535 eV Core-core repulsion = 24054.124807 eV Total energy + Delta-G solvation = -4203.203728 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.54907 -40.76278 -40.21027 -38.43047 -36.19096 -36.01149 -35.68654 -34.10661 -33.33578 -32.60637 -31.03309 -30.07865 -28.09962 -27.32914 -25.87215 -24.86057 -23.66601 -22.41089 -21.77477 -21.20835 -21.02022 -19.93235 -19.05827 -18.18003 -17.87212 -17.32436 -16.97105 -16.82680 -16.72095 -16.42118 -16.07779 -15.61274 -15.41198 -15.28050 -15.11149 -14.66474 -14.53674 -14.34336 -14.25725 -14.06889 -13.60050 -13.52267 -13.51814 -13.35726 -13.21582 -13.17674 -12.88003 -12.61669 -12.45221 -12.40886 -12.27303 -12.21662 -12.11827 -11.93938 -11.79021 -11.52050 -11.31120 -10.37139 -10.30883 -10.02826 -9.81328 -9.33009 -8.47670 -5.96566 -0.05853 0.88433 1.36988 1.39529 1.40391 1.53593 1.96960 2.03738 2.11590 2.28409 2.83898 2.92217 3.19243 3.49577 3.51536 3.63920 3.76338 3.95477 4.07940 4.08936 4.26756 4.29777 4.43220 4.47550 4.50389 4.50965 4.60359 4.63376 4.64543 4.66087 4.75928 4.86603 4.93866 4.97957 5.01515 5.03672 5.17316 5.22046 5.27128 5.39661 5.46925 5.90709 6.12753 6.20726 6.39421 6.51196 6.58967 6.99703 7.11305 7.54647 8.10250 8.69739 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014282 B = 0.001941 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.010169 B =14419.875246 C =15734.812956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.199 3.801 3 N -0.482 5.482 4 C -0.104 4.104 5 C 0.594 3.406 6 O -0.564 6.564 7 N -0.700 5.700 8 C 0.117 3.883 9 C -0.118 4.118 10 C 0.085 3.915 11 H 0.056 0.944 12 C -0.136 4.136 13 N -0.681 5.681 14 C 0.065 3.935 15 C 0.436 3.564 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.077 0.923 20 C -0.014 4.014 21 N -0.919 5.919 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.274 1.274 26 C 0.040 3.960 27 C -0.067 4.067 28 O -0.197 6.197 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.418 0.582 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.341 0.659 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.106 0.894 46 H 0.098 0.902 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.175 -12.119 -13.235 31.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.010 4.010 3 N -0.213 5.213 4 C -0.223 4.223 5 C 0.381 3.619 6 O -0.444 6.444 7 N -0.351 5.351 8 C -0.007 4.007 9 C -0.156 4.156 10 C -0.025 4.025 11 H 0.074 0.926 12 C -0.194 4.194 13 N -0.316 5.316 14 C -0.068 4.068 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.193 1.193 25 H -0.198 1.198 26 C -0.017 4.017 27 C -0.124 4.124 28 O -0.085 6.085 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.255 0.745 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.161 0.839 41 H 0.081 0.919 42 H 0.123 0.877 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.124 0.876 46 H 0.116 0.884 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.981 -11.398 -12.376 30.953 hybrid contribution 1.327 -1.023 0.071 1.677 sum -24.654 -12.421 -12.306 30.225 Atomic orbital electron populations 1.20643 0.77208 1.06896 1.06612 1.27307 0.98069 0.77426 0.98217 1.70692 1.00257 1.31064 1.19251 1.21402 0.92339 0.92846 1.15702 1.16986 0.86312 0.82497 0.76141 1.90814 1.25512 1.75932 1.52095 1.45653 1.11165 1.04807 1.73507 1.21459 0.87561 0.90130 1.01514 1.21890 0.98172 0.90563 1.04997 1.21612 0.94028 0.96952 0.89888 0.92638 1.21776 1.01347 0.93904 1.02342 1.60247 1.08995 1.32560 1.29762 1.21584 0.88998 1.03178 0.93024 1.20923 0.82484 0.82745 0.91481 1.90487 1.67647 1.52467 1.40506 1.41933 1.07637 1.59033 1.12395 1.19664 0.92401 1.43978 0.90416 0.90452 1.26059 0.96780 0.96161 1.02329 1.69676 1.10657 1.45184 1.30502 0.84917 0.77615 0.78446 0.77280 1.19657 1.19316 1.19844 1.24103 0.84775 0.94457 0.98356 1.20538 0.88538 0.98097 1.05181 1.84367 1.16005 1.38297 1.69853 0.86707 0.87083 0.86850 0.74537 0.93393 0.91342 0.87478 0.90190 0.89922 0.92651 0.93281 0.83908 0.91867 0.87659 0.76949 0.91262 0.87566 0.88375 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 71.23 0.75 0.50 16 2 C 0.20 3.11 8.30 88.39 0.73 3.84 16 3 N -0.48 -10.13 11.06 -293.05 -3.24 -13.37 16 4 C -0.10 -2.54 6.99 40.41 0.28 -2.25 16 5 C 0.59 16.44 7.81 86.66 0.68 17.12 16 6 O -0.56 -18.76 15.61 -4.06 -0.06 -18.82 16 7 N -0.70 -16.11 5.55 -466.37 -2.59 -18.70 16 8 C 0.12 2.74 5.50 86.38 0.48 3.22 16 9 C -0.12 -2.20 4.92 30.59 0.15 -2.05 16 10 C 0.08 1.92 2.65 44.92 0.12 2.04 16 11 H 0.06 1.18 7.80 -2.39 -0.02 1.16 16 12 C -0.14 -2.73 9.41 71.98 0.68 -2.05 16 13 N -0.68 -22.25 5.93 -495.59 -2.94 -25.19 16 14 C 0.06 2.33 5.97 85.56 0.51 2.84 16 15 C 0.44 21.74 7.82 87.66 0.69 22.43 16 16 O -0.62 -36.25 15.78 -3.07 -0.05 -36.30 16 17 N -0.57 -30.53 5.29 -306.98 -1.62 -32.15 16 18 C -0.34 -19.67 9.68 84.04 0.81 -18.86 16 19 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 20 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 21 N -0.92 -50.67 13.05 21.66 0.28 -50.39 16 22 Si 0.99 44.10 29.55 68.60 2.03 46.13 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 C 0.04 0.84 7.44 25.19 0.19 1.02 16 27 C -0.07 -1.09 9.13 71.24 0.65 -0.44 16 28 O -0.20 -3.52 10.73 0.37 0.00 -3.51 16 29 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.42 7.93 8.20 -92.71 -0.76 7.17 16 33 H 0.05 1.40 6.42 -2.39 -0.02 1.39 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 1.07 7.45 -2.39 -0.02 1.06 16 40 H 0.34 12.14 6.17 -89.69 -0.55 11.59 16 41 H 0.06 2.04 8.05 -2.39 -0.02 2.02 16 42 H 0.11 3.41 7.44 -2.39 -0.02 3.39 16 43 H 0.40 20.00 7.90 -92.70 -0.73 19.27 16 44 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 45 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.10 1.64 8.08 -2.39 -0.02 1.62 16 47 H 0.09 1.69 8.08 -2.39 -0.02 1.67 16 Total: -1.00 -79.09 399.84 -2.03 -81.12 By element: Atomic # 1 Polarization: 45.12 SS G_CDS: -1.02 Total: 44.10 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 7.18 Total: 27.08 kcal Atomic # 7 Polarization: -129.70 SS G_CDS: -10.11 Total: -139.81 kcal Atomic # 8 Polarization: -58.52 SS G_CDS: -0.11 Total: -58.63 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -79.09 -2.03 -81.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317408140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.415 kcal (2) G-P(sol) polarization free energy of solvation -79.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds