Wall clock time and date at job start Tue Mar 31 2020 21:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30251 * 125.61600 * 2 1 4 4 C 1.34480 * 108.69978 * 180.19168 * 3 2 1 5 5 C 1.34333 * 107.66662 * 359.55233 * 4 3 2 6 6 C 1.50697 * 126.44380 * 180.24083 * 5 4 3 7 7 C 1.50705 * 109.46896 * 90.00579 * 6 5 4 8 8 O 1.21283 * 119.99963 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99882 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99764 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.47542 * 325.00414 * 10 9 7 12 12 C 1.53004 * 109.47031 * 85.00309 * 10 9 7 13 13 C 1.53004 * 109.47207 * 205.00115 * 10 9 7 14 14 C 1.53000 * 109.47010 * 65.00444 * 13 10 9 15 15 N 1.46895 * 109.47185 * 180.02562 * 14 13 10 16 16 C 1.46901 * 111.00395 * 179.97438 * 15 14 13 17 17 C 1.50691 * 109.47513 * 179.97438 * 16 15 14 18 18 O 1.21291 * 120.00226 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00192 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00087 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00091 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99761 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00028 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47233 * 60.00046 * 24 22 20 26 26 H 1.48503 * 109.46934 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47380 * 299.99905 * 24 22 20 28 28 O 1.33964 * 125.61796 * 179.69989 * 2 1 3 29 29 H 1.09011 * 109.47350 * 270.29440 * 1 2 3 30 30 H 1.08991 * 109.47537 * 30.29458 * 1 2 3 31 31 H 1.09003 * 109.47302 * 150.30264 * 1 2 3 32 32 H 1.08002 * 126.17050 * 179.82616 * 4 3 2 33 33 H 1.08997 * 109.47389 * 210.00764 * 6 5 4 34 34 H 1.08997 * 109.47344 * 330.00999 * 6 5 4 35 35 H 0.97004 * 120.00257 * 0.02562 * 9 7 6 36 36 H 1.09004 * 109.46892 * 179.97438 * 12 10 9 37 37 H 1.08996 * 109.46945 * 299.99613 * 12 10 9 38 38 H 1.08999 * 109.47167 * 60.00031 * 12 10 9 39 39 H 1.08999 * 109.46916 * 185.00116 * 13 10 9 40 40 H 1.08996 * 109.47481 * 305.00047 * 13 10 9 41 41 H 1.09003 * 109.46609 * 300.00237 * 14 13 10 42 42 H 1.08996 * 109.47323 * 59.99505 * 14 13 10 43 43 H 1.00900 * 111.00230 * 303.95305 * 15 14 13 44 44 H 1.09000 * 109.46954 * 300.00208 * 16 15 14 45 45 H 1.08997 * 109.46745 * 59.99305 * 16 15 14 46 46 H 0.97003 * 119.99554 * 0.02562 * 19 17 16 47 47 H 0.97000 * 119.99783 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 -0.0043 5 6 3.5697 -0.6756 0.0031 6 6 4.7937 -1.5548 0.0069 7 6 5.2026 -1.8402 1.4291 8 8 4.5629 -1.3758 2.3488 9 7 6.2787 -2.6124 1.6787 10 6 6.6766 -2.8893 3.0612 11 1 6.4753 -2.0145 3.6795 12 6 5.8799 -4.0830 3.5918 13 6 8.1713 -3.2130 3.1066 14 6 8.9735 -1.9770 2.6945 15 7 10.4085 -2.2879 2.7376 16 6 11.2118 -1.1218 2.3464 17 6 12.6750 -1.4779 2.4031 18 8 13.0153 -2.5932 2.7370 19 7 13.6055 -0.5571 2.0827 20 6 14.9367 -0.8812 2.1338 21 1 15.2397 -1.8743 2.4311 22 6 15.8960 0.0683 1.8041 23 7 15.5274 1.2769 1.4428 24 14 17.7098 -0.3731 1.8743 25 1 17.9822 -1.4968 0.9426 26 1 18.5217 0.8056 1.4783 27 1 18.0673 -0.7789 3.2572 28 8 2.2872 -1.0890 0.0057 29 1 -0.3634 0.0053 1.0277 30 1 -0.3634 0.8872 -0.5183 31 1 -0.3634 -0.8927 -0.5091 32 1 4.4156 1.3162 -0.0080 33 1 4.5692 -2.4924 -0.5017 34 1 5.6076 -1.0468 -0.5102 35 1 6.7901 -2.9841 0.9431 36 1 6.1763 -4.2893 4.6202 37 1 4.8151 -3.8524 3.5594 38 1 6.0812 -4.9579 2.9735 39 1 8.4490 -3.5054 4.1193 40 1 8.3869 -4.0316 2.4201 41 1 8.6955 -1.6846 1.6819 42 1 8.7579 -1.1584 3.3811 43 1 10.6785 -2.6238 3.6499 44 1 10.9491 -0.8236 1.3315 45 1 11.0121 -0.2971 3.0305 46 1 13.3334 0.3350 1.8161 47 1 16.1971 1.9396 1.2122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320448699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:37 Heat of formation + Delta-G solvation = -60.268592 kcal Electronic energy + Delta-G solvation = -27861.577241 eV Core-core repulsion = 23659.772675 eV Total energy + Delta-G solvation = -4201.804566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.62100 -40.17946 -38.34726 -37.05482 -35.05534 -35.02932 -33.85086 -33.60266 -32.05829 -31.24367 -30.52775 -29.27107 -26.47438 -26.19236 -24.16610 -22.92603 -22.38172 -21.79163 -21.09977 -20.75364 -19.25879 -17.94894 -17.78623 -17.34920 -16.78131 -16.51639 -16.16881 -15.74212 -15.57032 -14.90413 -14.60955 -14.52573 -14.36173 -14.11377 -13.92733 -13.79672 -13.68265 -13.48829 -13.37159 -13.13983 -13.03156 -12.81116 -12.46392 -12.32096 -12.26924 -11.69138 -11.53172 -11.52639 -11.31908 -11.28679 -11.05528 -10.96220 -10.83084 -10.45526 -10.28133 -10.22908 -9.51763 -9.42255 -8.97906 -8.49662 -8.10248 -7.97903 -6.43236 -3.84321 1.09006 2.20481 2.27458 2.39926 2.92403 3.18961 3.24870 3.29124 3.72321 3.88537 4.00231 4.19731 4.23487 4.43476 4.55224 4.67245 4.75954 4.79984 4.85425 4.89649 4.94811 5.06897 5.08428 5.17825 5.21640 5.27420 5.30272 5.46109 5.51264 5.53796 5.61783 5.66687 5.76403 5.85535 5.89297 5.95445 6.02611 6.04110 6.20985 6.24683 7.12706 7.16654 7.43430 7.53405 7.61232 7.85428 8.04279 8.59370 9.15985 9.52338 10.03707 10.74353 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017100 B = 0.001662 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.041949 B =16846.000572 C =18192.316049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.190 3.810 3 N -0.484 5.484 4 C -0.021 4.021 5 C -0.031 4.031 6 C -0.057 4.057 7 C 0.514 3.486 8 O -0.531 6.531 9 N -0.721 5.721 10 C 0.144 3.856 11 H 0.088 0.912 12 C -0.162 4.162 13 C -0.126 4.126 14 C 0.059 3.941 15 N -0.670 5.670 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 O -0.198 6.198 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.183 0.817 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.404 0.596 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.027 0.973 43 H 0.349 0.651 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.908 -4.826 -3.732 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.017 4.017 3 N -0.214 5.214 4 C -0.160 4.160 5 C -0.084 4.084 6 C -0.097 4.097 7 C 0.300 3.700 8 O -0.406 6.406 9 N -0.373 5.373 10 C 0.039 3.961 11 H 0.107 0.893 12 C -0.221 4.221 13 C -0.164 4.164 14 C -0.071 4.071 15 N -0.302 5.302 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.431 4.431 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 O -0.085 6.085 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.200 0.800 33 H 0.133 0.867 34 H 0.148 0.852 35 H 0.239 0.761 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.168 0.832 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -28.250 -4.776 -3.503 28.864 hybrid contribution 1.353 0.214 0.260 1.394 sum -26.897 -4.563 -3.243 27.473 Atomic orbital electron populations 1.20260 0.81315 1.05037 1.04786 1.26266 0.96432 0.78616 1.00356 1.70440 1.02075 1.30280 1.18556 1.23020 0.95185 0.92768 1.05040 1.22411 0.83132 0.94786 1.08055 1.20063 0.92499 1.00936 0.96198 1.20330 0.80581 0.78396 0.90731 1.90759 1.52809 1.50844 1.46218 1.46081 1.30002 1.51914 1.09346 1.21001 0.93792 0.98902 0.82397 0.89348 1.22159 1.00647 0.97772 1.01484 1.21882 0.91925 0.99074 1.03496 1.21960 0.88416 0.95812 1.00887 1.60085 1.01583 1.32736 1.35804 1.21660 0.93449 0.91766 1.01305 1.19805 0.86617 0.86314 0.84737 1.90519 1.81749 1.21779 1.52790 1.41863 1.05928 1.12921 1.59247 1.19662 0.80834 0.99476 1.43105 0.87958 1.25266 1.00658 0.94950 0.97018 1.69606 1.35243 1.03678 1.45752 0.85908 0.81602 0.77741 0.78907 1.19877 1.20967 1.19911 1.84339 1.16479 1.37825 1.69882 0.88878 0.88070 0.89384 0.79955 0.86734 0.85223 0.76122 0.91395 0.92254 0.92236 0.90121 0.90097 0.91194 0.95530 0.83161 0.89692 0.93921 0.77456 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 36.01 0.38 0.09 16 2 C 0.19 1.90 8.34 -12.95 -0.11 1.79 16 3 N -0.48 -5.78 11.29 -11.10 -0.13 -5.91 16 4 C -0.02 -0.23 11.80 -17.77 -0.21 -0.44 16 5 C -0.03 -0.30 5.88 -35.69 -0.21 -0.51 16 6 C -0.06 -0.36 6.25 -29.03 -0.18 -0.54 16 7 C 0.51 4.74 7.79 -10.98 -0.09 4.65 16 8 O -0.53 -7.34 15.70 5.55 0.09 -7.25 16 9 N -0.72 -5.23 4.53 -53.80 -0.24 -5.48 16 10 C 0.14 1.21 2.57 -67.93 -0.17 1.03 16 11 H 0.09 0.92 7.58 -51.93 -0.39 0.52 16 12 C -0.16 -1.28 9.48 37.16 0.35 -0.93 16 13 C -0.13 -1.10 5.01 -26.73 -0.13 -1.23 16 14 C 0.06 0.65 5.57 -3.83 -0.02 0.63 16 15 N -0.67 -10.20 6.13 -115.07 -0.70 -10.91 16 16 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 17 C 0.44 10.28 7.82 -10.99 -0.09 10.19 16 18 O -0.58 -15.70 15.78 5.55 0.09 -15.61 16 19 N -0.56 -14.19 5.29 -10.97 -0.06 -14.24 16 20 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 24 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 O -0.20 -2.14 10.78 5.36 0.06 -2.08 16 29 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.18 1.55 8.06 -52.49 -0.42 1.12 16 33 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.40 1.99 8.60 -40.82 -0.35 1.63 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.72 7.75 -51.93 -0.40 0.32 16 42 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.35 5.54 8.43 -39.29 -0.33 5.20 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 47 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 405.43 15.07 6.11 6.11 Total: -1.00 -36.89 405.43 -7.07 -43.97 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -7.23 Total: 11.61 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -0.75 Total: 7.58 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.41 Total: -60.21 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: 0.23 Total: -24.95 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.89 -7.07 -43.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320448699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.303 kcal (2) G-P(sol) polarization free energy of solvation -36.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds