Wall clock time and date at job start Tue Mar 31 2020 21:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30251 * 125.61600 * 2 1 4 4 C 1.34480 * 108.69978 * 180.19168 * 3 2 1 5 5 C 1.34333 * 107.66662 * 359.55233 * 4 3 2 6 6 C 1.50697 * 126.44380 * 180.24083 * 5 4 3 7 7 C 1.50705 * 109.46896 * 90.00579 * 6 5 4 8 8 O 1.21283 * 119.99963 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99882 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99764 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.47542 * 325.00414 * 10 9 7 12 12 C 1.53004 * 109.47031 * 85.00309 * 10 9 7 13 13 C 1.53004 * 109.47207 * 205.00115 * 10 9 7 14 14 C 1.53000 * 109.47010 * 65.00444 * 13 10 9 15 15 N 1.46895 * 109.47185 * 180.02562 * 14 13 10 16 16 C 1.46901 * 111.00395 * 179.97438 * 15 14 13 17 17 C 1.50691 * 109.47513 * 179.97438 * 16 15 14 18 18 O 1.21291 * 120.00226 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00192 * 179.97438 * 17 16 15 20 20 C 1.37101 * 120.00087 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00091 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99761 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00028 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47233 * 60.00046 * 24 22 20 26 26 H 1.48503 * 109.46934 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47380 * 299.99905 * 24 22 20 28 28 O 1.33964 * 125.61796 * 179.69989 * 2 1 3 29 29 H 1.09011 * 109.47350 * 270.29440 * 1 2 3 30 30 H 1.08991 * 109.47537 * 30.29458 * 1 2 3 31 31 H 1.09003 * 109.47302 * 150.30264 * 1 2 3 32 32 H 1.08002 * 126.17050 * 179.82616 * 4 3 2 33 33 H 1.08997 * 109.47389 * 210.00764 * 6 5 4 34 34 H 1.08997 * 109.47344 * 330.00999 * 6 5 4 35 35 H 0.97004 * 120.00257 * 0.02562 * 9 7 6 36 36 H 1.09004 * 109.46892 * 179.97438 * 12 10 9 37 37 H 1.08996 * 109.46945 * 299.99613 * 12 10 9 38 38 H 1.08999 * 109.47167 * 60.00031 * 12 10 9 39 39 H 1.08999 * 109.46916 * 185.00116 * 13 10 9 40 40 H 1.08996 * 109.47481 * 305.00047 * 13 10 9 41 41 H 1.09003 * 109.46609 * 300.00237 * 14 13 10 42 42 H 1.08996 * 109.47323 * 59.99505 * 14 13 10 43 43 H 1.00900 * 111.00230 * 303.95305 * 15 14 13 44 44 H 1.09000 * 109.46954 * 300.00208 * 16 15 14 45 45 H 1.08997 * 109.46745 * 59.99305 * 16 15 14 46 46 H 0.97003 * 119.99554 * 0.02562 * 19 17 16 47 47 H 0.97000 * 119.99783 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 -0.0043 5 6 3.5697 -0.6756 0.0031 6 6 4.7937 -1.5548 0.0069 7 6 5.2026 -1.8402 1.4291 8 8 4.5629 -1.3758 2.3488 9 7 6.2787 -2.6124 1.6787 10 6 6.6766 -2.8893 3.0612 11 1 6.4753 -2.0145 3.6795 12 6 5.8799 -4.0830 3.5918 13 6 8.1713 -3.2130 3.1066 14 6 8.9735 -1.9770 2.6945 15 7 10.4085 -2.2879 2.7376 16 6 11.2118 -1.1218 2.3464 17 6 12.6750 -1.4779 2.4031 18 8 13.0153 -2.5932 2.7370 19 7 13.6055 -0.5571 2.0827 20 6 14.9367 -0.8812 2.1338 21 1 15.2397 -1.8743 2.4311 22 6 15.8960 0.0683 1.8041 23 7 15.5274 1.2769 1.4428 24 14 17.7098 -0.3731 1.8743 25 1 17.9822 -1.4968 0.9426 26 1 18.5217 0.8056 1.4783 27 1 18.0673 -0.7789 3.2572 28 8 2.2872 -1.0890 0.0057 29 1 -0.3634 0.0053 1.0277 30 1 -0.3634 0.8872 -0.5183 31 1 -0.3634 -0.8927 -0.5091 32 1 4.4156 1.3162 -0.0080 33 1 4.5692 -2.4924 -0.5017 34 1 5.6076 -1.0468 -0.5102 35 1 6.7901 -2.9841 0.9431 36 1 6.1763 -4.2893 4.6202 37 1 4.8151 -3.8524 3.5594 38 1 6.0812 -4.9579 2.9735 39 1 8.4490 -3.5054 4.1193 40 1 8.3869 -4.0316 2.4201 41 1 8.6955 -1.6846 1.6819 42 1 8.7579 -1.1584 3.3811 43 1 10.6785 -2.6238 3.6499 44 1 10.9491 -0.8236 1.3315 45 1 11.0121 -0.2971 3.0305 46 1 13.3334 0.3350 1.8161 47 1 16.1971 1.9396 1.2122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320448699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:37 Heat of formation + Delta-G solvation = -91.451284 kcal Electronic energy + Delta-G solvation = -27862.929424 eV Core-core repulsion = 23659.772675 eV Total energy + Delta-G solvation = -4203.156749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.34169 -40.91782 -40.14167 -37.99429 -36.29546 -35.78964 -35.68851 -34.25089 -33.28190 -32.76363 -31.13689 -30.21659 -27.78830 -27.02742 -25.77489 -23.73652 -23.26214 -22.54921 -21.84172 -21.45388 -21.04339 -19.90331 -18.53125 -18.04672 -17.83461 -17.50838 -17.21982 -16.98098 -16.48184 -16.33389 -15.95366 -15.64069 -15.32431 -15.20685 -14.99723 -14.86198 -14.68030 -14.38890 -14.03547 -13.86272 -13.83355 -13.65110 -13.48185 -13.34268 -13.20487 -13.04275 -12.92694 -12.78250 -12.43294 -12.31141 -12.21562 -12.11717 -12.10450 -11.76921 -11.59734 -11.49571 -11.06297 -10.35170 -10.12385 -10.01511 -9.67934 -9.33942 -8.46274 -5.95297 0.38287 1.40545 1.42651 1.53516 1.56281 1.58864 1.68786 2.05513 2.29124 2.29646 2.89509 3.15326 3.21014 3.49292 3.59947 3.84398 3.95348 4.03313 4.08181 4.11783 4.14771 4.33362 4.38862 4.44053 4.50013 4.54364 4.61419 4.62469 4.65737 4.68940 4.70189 4.83660 4.90845 5.00028 5.02411 5.08572 5.21327 5.31309 5.37355 5.41059 5.53646 5.88943 6.10208 6.39862 6.53373 6.60158 6.70426 7.12635 7.22440 7.56413 8.11456 8.70759 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017100 B = 0.001662 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.041949 B =16846.000572 C =18192.316049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.183 3.817 3 N -0.520 5.520 4 C -0.046 4.046 5 C -0.037 4.037 6 C -0.050 4.050 7 C 0.514 3.486 8 O -0.583 6.583 9 N -0.708 5.708 10 C 0.149 3.851 11 H 0.068 0.932 12 C -0.157 4.157 13 C -0.113 4.113 14 C 0.061 3.939 15 N -0.680 5.680 16 C 0.065 3.935 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.080 0.920 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.272 1.272 28 O -0.211 6.211 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.195 0.805 33 H 0.143 0.857 34 H 0.163 0.837 35 H 0.419 0.581 36 H 0.073 0.927 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.026 0.974 43 H 0.344 0.656 44 H 0.106 0.894 45 H 0.061 0.939 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.226 -5.406 -4.689 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.023 4.023 3 N -0.251 5.251 4 C -0.184 4.184 5 C -0.091 4.091 6 C -0.090 4.090 7 C 0.301 3.699 8 O -0.463 6.463 9 N -0.361 5.361 10 C 0.044 3.956 11 H 0.086 0.914 12 C -0.215 4.215 13 C -0.152 4.152 14 C -0.068 4.068 15 N -0.312 5.312 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.210 5.210 20 C -0.466 4.466 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.197 1.197 28 O -0.099 6.099 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.212 0.788 33 H 0.161 0.839 34 H 0.180 0.820 35 H 0.256 0.744 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.044 0.956 43 H 0.162 0.838 44 H 0.124 0.876 45 H 0.079 0.921 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.568 -5.355 -4.492 29.411 hybrid contribution 1.387 0.375 0.581 1.549 sum -27.181 -4.981 -3.912 27.909 Atomic orbital electron populations 1.20526 0.78333 1.06636 1.05868 1.27234 0.98022 0.78107 0.98983 1.70423 1.02981 1.31510 1.20136 1.23372 0.95412 0.93727 1.05867 1.22988 0.83737 0.95144 1.07183 1.20248 0.91953 1.02149 0.94623 1.20786 0.80172 0.77605 0.91337 1.90745 1.54560 1.52991 1.47993 1.45977 1.29510 1.51139 1.09441 1.20848 0.93601 0.98323 0.82795 0.91404 1.22101 0.99337 0.97862 1.02226 1.21767 0.91438 0.98153 1.03809 1.22047 0.86076 0.96892 1.01751 1.60114 1.03457 1.32027 1.35583 1.21527 0.89192 0.92956 1.03114 1.20890 0.88888 0.85277 0.82495 1.90487 1.83059 1.23402 1.53987 1.41941 1.05635 1.13485 1.59983 1.19651 0.82641 0.99128 1.45153 0.90227 1.26042 1.04459 0.94688 0.96027 1.69668 1.36642 1.04191 1.45596 0.84984 0.76626 0.77862 0.78843 1.19642 1.19563 1.19718 1.84349 1.17085 1.38322 1.70106 0.87871 0.86984 0.87234 0.78771 0.83936 0.82000 0.74356 0.90770 0.93972 0.90934 0.89913 0.89380 0.89919 0.95568 0.83793 0.87610 0.92123 0.76999 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.51 71.24 0.75 0.24 16 2 C 0.18 3.63 8.34 88.34 0.74 4.37 16 3 N -0.52 -12.61 11.29 -303.83 -3.43 -16.04 16 4 C -0.05 -0.99 11.80 83.39 0.98 -0.01 16 5 C -0.04 -0.72 5.88 24.79 0.15 -0.57 16 6 C -0.05 -0.53 6.25 29.10 0.18 -0.35 16 7 C 0.51 8.76 7.79 87.66 0.68 9.44 16 8 O -0.58 -16.17 15.70 -3.04 -0.05 -16.22 16 9 N -0.71 -8.77 4.53 -442.52 -2.00 -10.77 16 10 C 0.15 2.29 2.57 44.99 0.12 2.41 16 11 H 0.07 1.37 7.58 -2.38 -0.02 1.35 16 12 C -0.16 -2.27 9.48 71.98 0.68 -1.58 16 13 C -0.11 -1.75 5.01 30.60 0.15 -1.59 16 14 C 0.06 1.21 5.57 86.30 0.48 1.69 16 15 N -0.68 -19.53 6.13 -517.96 -3.17 -22.71 16 16 C 0.06 2.12 6.17 85.55 0.53 2.64 16 17 C 0.44 20.37 7.82 87.65 0.69 21.05 16 18 O -0.62 -33.85 15.78 -3.06 -0.05 -33.90 16 19 N -0.57 -29.07 5.29 -306.99 -1.62 -30.70 16 20 C -0.34 -18.95 9.68 84.04 0.81 -18.13 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 23 N -0.92 -49.30 13.05 21.66 0.28 -49.01 16 24 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 28 O -0.21 -4.47 10.78 -3.73 -0.04 -4.51 16 29 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 0.49 8.14 -2.39 -0.02 0.48 16 32 H 0.20 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.16 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.42 2.78 8.60 -92.71 -0.80 1.98 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.44 7.75 -2.39 -0.02 1.43 16 42 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.34 10.54 8.43 -89.69 -0.76 9.78 16 44 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 47 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -82.01 405.43 -1.92 -83.93 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -1.27 Total: 35.98 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 7.41 Total: 19.43 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -9.95 Total: -129.24 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -0.14 Total: -54.63 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -82.01 -1.92 -83.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320448699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.519 kcal (2) G-P(sol) polarization free energy of solvation -82.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds