Wall clock time and date at job start Tue Mar 31 2020 22:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47083 * 2 1 4 4 O 1.33496 * 126.83141 * 270.04445 * 3 2 1 5 5 N 1.20657 * 113.15731 * 179.70834 * 4 3 2 6 6 C 1.30009 * 112.30036 * 0.43375 * 5 4 3 7 7 C 1.37356 * 126.82862 * 89.99891 * 3 2 1 8 8 C 1.47396 * 128.56449 * 0.04309 * 7 3 2 9 9 O 1.21606 * 120.00083 * 0.02562 * 8 7 3 10 10 N 1.34779 * 119.99907 * 180.02562 * 8 7 3 11 11 C 1.46503 * 120.00032 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47305 * 322.98919 * 11 10 8 13 13 C 1.52995 * 109.47013 * 82.98643 * 11 10 8 14 14 C 1.53002 * 109.47286 * 202.98897 * 11 10 8 15 15 N 1.46899 * 109.46713 * 55.16339 * 14 11 10 16 16 C 1.46900 * 110.99700 * 198.92811 * 15 14 11 17 17 C 1.46906 * 111.00217 * 74.97840 * 15 14 11 18 18 C 1.50700 * 109.47009 * 189.99495 * 17 15 14 19 19 O 1.21288 * 120.00180 * 359.97438 * 18 17 15 20 20 N 1.34778 * 119.99486 * 179.97438 * 18 17 15 21 21 C 1.37098 * 119.99634 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00212 * 0.02562 * 21 20 18 23 23 C 1.38957 * 119.99981 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99747 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99787 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47122 * 90.00275 * 25 23 21 27 27 H 1.48498 * 109.46993 * 210.00010 * 25 23 21 28 28 H 1.48496 * 109.47228 * 330.00073 * 25 23 21 29 29 H 1.08996 * 109.47564 * 299.99810 * 1 2 3 30 30 H 1.09003 * 109.47664 * 59.99997 * 1 2 3 31 31 H 1.09003 * 109.46969 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47314 * 240.00383 * 2 1 3 33 33 H 1.09003 * 109.47664 * 120.00003 * 2 1 3 34 34 H 1.08001 * 127.33517 * 179.86324 * 6 5 4 35 35 H 0.96999 * 119.99936 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.47401 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.47312 * 299.99974 * 13 11 10 38 38 H 1.08998 * 109.47122 * 60.00372 * 13 11 10 39 39 H 1.08996 * 109.47136 * 175.16526 * 14 11 10 40 40 H 1.08997 * 109.46790 * 295.16407 * 14 11 10 41 41 H 1.08998 * 109.47610 * 54.12216 * 16 15 14 42 42 H 1.09000 * 109.47441 * 174.12688 * 16 15 14 43 43 H 1.09004 * 109.47201 * 294.12372 * 16 15 14 44 44 H 1.09000 * 109.46444 * 309.99796 * 17 15 14 45 45 H 1.09001 * 109.46832 * 69.99352 * 17 15 14 46 46 H 0.96994 * 120.00165 * 359.97438 * 20 18 17 47 47 H 0.96998 * 119.99378 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2982 2.1756 -1.0685 5 7 2.6839 3.2827 -0.7833 6 6 2.7540 3.4648 0.5021 7 6 2.3067 2.1971 1.0994 8 6 2.1836 1.8464 2.5258 9 8 1.7940 0.7406 2.8486 10 7 2.5028 2.7513 3.4722 11 6 2.3799 2.4029 4.8899 12 1 1.5018 1.7734 5.0346 13 6 3.6305 1.6447 5.3390 14 6 2.2333 3.6809 5.7183 15 7 1.1001 4.4659 5.2109 16 6 1.1886 5.8642 5.6526 17 6 -0.1788 3.8663 5.6147 18 6 -1.3061 4.5461 4.8813 19 8 -1.0678 5.4423 4.0995 20 7 -2.5792 4.1582 5.0941 21 6 -3.6048 4.7763 4.4265 22 1 -3.3926 5.5737 3.7298 23 6 -4.9174 4.3767 4.6463 24 7 -5.9004 4.9689 4.0060 25 14 -5.2844 2.9970 5.8509 26 1 -5.4926 3.5659 7.2067 27 1 -6.5112 2.2786 5.4218 28 1 -4.1413 2.0497 5.8817 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.0689 4.3582 1.0209 35 1 2.8138 3.6332 3.2147 36 1 3.5390 1.3850 6.3936 37 1 3.7350 0.7342 4.7488 38 1 4.5085 2.2741 5.1944 39 1 2.0560 3.4193 6.7615 40 1 3.1469 4.2702 5.6418 41 1 2.1586 6.2736 5.3707 42 1 0.3974 6.4456 5.1793 43 1 1.0755 5.9109 6.7357 44 1 -0.1749 2.8039 5.3708 45 1 -0.3159 3.9920 6.6887 46 1 -2.7697 3.4413 5.7190 47 1 -6.8167 4.6902 4.1597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322256716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:17 Heat of formation + Delta-G solvation = -29.769873 kcal Electronic energy + Delta-G solvation = -30274.410372 eV Core-core repulsion = 26073.928330 eV Total energy + Delta-G solvation = -4200.482042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.95031 -40.90121 -40.33345 -38.31786 -36.22598 -35.75131 -35.41885 -34.71974 -33.75438 -32.17626 -31.05127 -29.73034 -27.94387 -26.49625 -26.13410 -24.98097 -23.77615 -22.86247 -21.61249 -21.38379 -21.14155 -20.14830 -19.07374 -18.75222 -17.89313 -17.43172 -17.28880 -16.80887 -16.64927 -16.05664 -15.78086 -15.74247 -15.44695 -15.31010 -15.07925 -14.96595 -14.72176 -14.43124 -14.34350 -14.11210 -13.60571 -13.53867 -13.38619 -13.13995 -12.93520 -12.86804 -12.76351 -12.62454 -12.50552 -12.47320 -12.37562 -12.00506 -11.88959 -11.69866 -11.46209 -11.44978 -11.09281 -10.53821 -10.35552 -10.23324 -9.95132 -9.19105 -8.42211 -6.02199 0.03520 0.77425 1.28305 1.32648 1.41634 1.75009 1.96292 2.17538 2.21107 2.31086 2.65293 3.14315 3.19730 3.27398 3.30672 3.59653 3.82878 4.00205 4.06221 4.18561 4.21260 4.24508 4.33043 4.34555 4.39022 4.49190 4.60222 4.67942 4.71638 4.73295 4.81421 4.82877 4.86815 4.93265 5.07116 5.11650 5.25737 5.27688 5.35556 5.51760 5.57471 5.89594 6.01351 6.21658 6.56790 6.59321 6.88516 7.11828 7.23146 7.39890 7.97323 8.75551 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009031 B = 0.003749 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.691124 B = 7466.277301 C = 8829.236470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C 0.050 3.950 4 O 0.083 5.917 5 N -0.379 5.379 6 C 0.034 3.966 7 C -0.281 4.281 8 C 0.597 3.403 9 O -0.567 6.567 10 N -0.688 5.688 11 C 0.145 3.855 12 H 0.066 0.934 13 C -0.152 4.152 14 C 0.049 3.951 15 N -0.534 5.534 16 C 0.027 3.973 17 C 0.054 3.946 18 C 0.452 3.548 19 O -0.601 6.601 20 N -0.596 5.596 21 C -0.324 4.324 22 H 0.055 0.945 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.961 3.039 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.236 1.236 29 H 0.033 0.967 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.226 0.774 35 H 0.410 0.590 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.032 0.968 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.387 0.613 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.163 -11.428 3.392 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 C -0.015 4.015 4 O 0.027 5.973 5 N -0.087 5.087 6 C -0.148 4.148 7 C -0.288 4.288 8 C 0.384 3.616 9 O -0.448 6.448 10 N -0.338 5.338 11 C 0.041 3.959 12 H 0.084 0.916 13 C -0.210 4.210 14 C -0.079 4.079 15 N -0.259 5.259 16 C -0.121 4.121 17 C -0.077 4.077 18 C 0.240 3.760 19 O -0.484 6.484 20 N -0.238 5.238 21 C -0.454 4.454 22 H 0.074 0.926 23 C -0.212 4.212 24 N -0.576 5.576 25 Si 0.781 3.219 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.160 1.160 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.138 0.862 33 H 0.127 0.873 34 H 0.243 0.757 35 H 0.246 0.754 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.119 0.881 45 H 0.098 0.902 46 H 0.222 0.778 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.123 -10.810 1.483 24.667 hybrid contribution -1.107 0.098 1.652 1.991 sum 21.016 -10.712 3.135 23.795 Atomic orbital electron populations 1.21703 0.93159 1.03922 1.01443 1.20471 0.96718 0.84349 1.06564 1.25396 0.94111 0.96973 0.84976 1.84544 1.61762 1.17427 1.33614 1.73623 1.17823 0.98849 1.18411 1.26818 0.99318 0.99571 0.89136 1.22236 1.14946 0.96029 0.95580 1.16845 0.76782 0.84427 0.83545 1.90739 1.48613 1.22788 1.82634 1.45548 1.66156 1.16335 1.05772 1.21098 0.99317 0.96181 0.79331 0.91630 1.22059 0.96679 0.99957 1.02331 1.22586 0.94222 0.93755 0.97332 1.61451 1.00497 1.02907 1.60997 1.22437 1.03231 0.88573 0.97812 1.21837 0.88480 0.99312 0.98088 1.20885 0.83820 0.85746 0.85542 1.90505 1.83958 1.34007 1.39956 1.42078 1.05804 1.34834 1.41053 1.18973 0.86237 1.17449 1.22708 0.92641 1.26057 0.94238 1.01070 0.99869 1.69801 1.00472 1.43701 1.43589 0.85423 0.79580 0.78278 0.78638 1.17857 1.20002 1.15981 0.94760 0.92190 0.88848 0.86235 0.87330 0.75732 0.75373 0.89706 0.93537 0.90748 0.90799 0.87402 0.89368 0.93240 0.94939 0.88051 0.90213 0.77816 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.89 71.98 0.71 -2.37 16 2 C -0.04 -0.83 6.05 29.85 0.18 -0.65 16 3 C 0.05 1.23 6.80 25.48 0.17 1.40 16 4 O 0.08 2.16 11.06 76.96 0.85 3.01 16 5 N -0.38 -10.29 12.01 -54.21 -0.65 -10.94 16 6 C 0.03 0.81 11.95 87.29 1.04 1.86 16 7 C -0.28 -7.28 6.47 -18.75 -0.12 -7.40 16 8 C 0.60 16.12 7.75 86.65 0.67 16.79 16 9 O -0.57 -17.81 14.92 -4.05 -0.06 -17.87 16 10 N -0.69 -14.82 4.82 -445.82 -2.15 -16.97 16 11 C 0.15 2.70 2.55 44.99 0.11 2.82 16 12 H 0.07 1.55 6.41 -2.39 -0.02 1.53 16 13 C -0.15 -2.09 9.46 71.98 0.68 -1.41 16 14 C 0.05 0.78 4.54 86.30 0.39 1.17 16 15 N -0.53 -13.75 4.16 -927.04 -3.86 -17.61 16 16 C 0.03 0.70 9.17 127.69 1.17 1.87 16 17 C 0.05 1.63 5.28 85.56 0.45 2.09 16 18 C 0.45 20.35 7.52 87.66 0.66 21.01 16 19 O -0.60 -32.45 13.88 -3.05 -0.04 -32.49 16 20 N -0.60 -28.56 5.09 -306.98 -1.56 -30.12 16 21 C -0.32 -19.21 10.16 84.04 0.85 -18.36 16 22 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.93 -57.01 13.96 21.66 0.30 -56.71 16 25 Si 0.96 39.63 27.74 68.60 1.90 41.53 16 26 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 28 H -0.24 -8.42 6.52 99.48 0.65 -7.77 16 29 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.11 2.24 6.78 -2.39 -0.02 2.23 16 34 H 0.23 3.76 7.88 -2.91 -0.02 3.73 16 35 H 0.41 7.57 7.95 -92.71 -0.74 6.83 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.93 8.01 -2.39 -0.02 0.91 16 40 H 0.11 1.22 7.81 -2.39 -0.02 1.20 16 41 H 0.09 1.74 7.94 -2.39 -0.02 1.72 16 42 H 0.05 1.79 5.92 -2.39 -0.01 1.77 16 43 H 0.03 0.72 8.13 -2.39 -0.02 0.70 16 44 H 0.10 2.86 6.66 -2.39 -0.02 2.84 16 45 H 0.08 1.97 8.11 -2.39 -0.02 1.95 16 46 H 0.39 15.64 5.76 -92.71 -0.53 15.10 16 47 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -82.17 391.50 1.87 -80.30 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: -0.32 Total: 39.35 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 7.45 Total: 18.51 kcal Atomic # 7 Polarization: -124.43 SS G_CDS: -7.92 Total: -132.35 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: 0.75 Total: -47.34 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.90 Total: 41.53 kcal Total: -82.17 1.87 -80.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322256716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.534 kcal (2) G-P(sol) polarization free energy of solvation -82.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds