Wall clock time and date at job start Tue Mar 31 2020 22:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50695 * 109.46977 * 2 1 4 4 O 1.33484 * 126.82917 * 269.99982 * 3 2 1 5 5 N 1.20660 * 113.15954 * 180.02562 * 4 3 2 6 6 C 1.30015 * 112.29854 * 359.72784 * 5 4 3 7 7 C 1.37362 * 126.82751 * 90.00094 * 3 2 1 8 8 C 1.47395 * 128.56906 * 359.96308 * 7 3 2 9 9 O 1.21618 * 119.99538 * 359.97438 * 8 7 3 10 10 N 1.34773 * 120.00345 * 180.02562 * 8 7 3 11 11 C 1.46504 * 120.00233 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46671 * 34.12252 * 11 10 8 13 13 C 1.53001 * 109.46998 * 274.12515 * 11 10 8 14 14 C 1.52994 * 109.47407 * 154.12317 * 11 10 8 15 15 N 1.46902 * 109.46937 * 304.36752 * 14 11 10 16 16 C 1.46905 * 110.99864 * 164.38182 * 15 14 11 17 17 C 1.46894 * 110.99997 * 288.33291 * 15 14 11 18 18 C 1.50702 * 109.47345 * 170.00016 * 17 15 14 19 19 O 1.21295 * 119.99910 * 0.02562 * 18 17 15 20 20 N 1.34770 * 120.00357 * 179.97438 * 18 17 15 21 21 C 1.37101 * 120.00326 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99886 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00141 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00035 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00100 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47343 * 59.99460 * 25 23 21 27 27 H 1.48495 * 109.47520 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.47179 * 299.99898 * 25 23 21 29 29 H 1.09004 * 109.46919 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46890 * 299.99515 * 1 2 3 31 31 H 1.08996 * 109.47229 * 60.00286 * 1 2 3 32 32 H 1.08998 * 109.47083 * 239.99724 * 2 1 3 33 33 H 1.09000 * 109.46612 * 120.00098 * 2 1 3 34 34 H 1.08001 * 127.33483 * 180.27362 * 6 5 4 35 35 H 0.97003 * 120.00161 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.46851 * 179.97438 * 13 11 10 37 37 H 1.08997 * 109.47290 * 299.99586 * 13 11 10 38 38 H 1.09002 * 109.46970 * 60.00015 * 13 11 10 39 39 H 1.09002 * 109.46769 * 64.36405 * 14 11 10 40 40 H 1.08997 * 109.47286 * 184.36700 * 14 11 10 41 41 H 1.08997 * 109.46986 * 54.81518 * 16 15 14 42 42 H 1.09005 * 109.46725 * 174.81903 * 16 15 14 43 43 H 1.09006 * 109.46780 * 294.81202 * 16 15 14 44 44 H 1.08997 * 109.47303 * 290.00197 * 17 15 14 45 45 H 1.08994 * 109.47338 * 50.00250 * 17 15 14 46 46 H 0.97003 * 120.00382 * 0.02562 * 20 18 17 47 47 H 0.97008 * 119.99796 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2990 2.1752 -1.0684 5 7 2.6903 3.2804 -0.7833 6 6 2.7503 3.4661 0.5021 7 6 2.3068 2.1971 1.0995 8 6 2.1823 1.8469 2.5258 9 8 1.7903 0.7418 2.8486 10 7 2.5017 2.7517 3.4723 11 6 2.3774 2.4038 4.8900 12 1 2.6155 1.3490 5.0274 13 6 0.9443 2.6682 5.3561 14 6 3.3463 3.2566 5.7113 15 7 4.7106 3.0821 5.1951 16 6 5.6013 4.1384 5.6940 17 6 5.2337 1.7509 5.5295 18 6 6.5219 1.5154 4.7837 19 8 6.9612 2.3725 4.0464 20 7 7.1863 0.3528 4.9366 21 6 8.3585 0.1388 4.2585 22 1 8.7497 0.9020 3.6020 23 6 9.0432 -1.0600 4.4158 24 7 8.5675 -1.9884 5.2149 25 14 10.6406 -1.3513 3.4924 26 1 11.6331 -0.3175 3.8817 27 1 11.1697 -2.6969 3.8307 28 1 10.3895 -1.2707 2.0310 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.0614 4.3608 1.0209 35 1 2.8140 3.6333 3.2148 36 1 0.8517 2.4089 6.4108 37 1 0.7062 3.7229 5.2187 38 1 0.2540 2.0605 4.7710 39 1 3.0607 4.3058 5.6356 40 1 3.3101 2.9445 6.7550 41 1 5.5614 4.1629 6.7830 42 1 6.6226 3.9343 5.3723 43 1 5.2809 5.1016 5.2968 44 1 5.4189 1.6921 6.6020 45 1 4.5050 0.9920 5.2445 46 1 6.8352 -0.3326 5.5265 47 1 9.0454 -2.8255 5.3244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322256717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:22 Heat of formation + Delta-G solvation = -9.616973 kcal Electronic energy + Delta-G solvation = -30166.698199 eV Core-core repulsion = 25967.090052 eV Total energy + Delta-G solvation = -4199.608147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.94463 -39.77721 -38.58718 -36.95532 -35.00529 -34.50514 -33.83268 -33.65753 -31.24166 -31.20610 -30.13185 -28.06297 -26.99114 -25.16938 -24.68344 -24.09587 -22.70460 -21.81860 -20.56826 -20.36823 -19.10431 -18.07513 -17.83514 -17.72756 -16.56967 -16.24973 -16.10871 -15.32899 -14.97883 -14.81035 -14.64163 -14.50243 -14.34625 -13.97169 -13.77326 -13.66667 -13.52483 -13.43337 -12.89775 -12.73301 -12.50485 -12.19168 -12.07888 -11.99992 -11.80711 -11.66794 -11.48930 -11.47058 -11.22162 -11.03344 -11.00573 -10.65802 -10.44389 -10.43161 -10.20297 -9.98931 -9.51388 -9.45400 -8.97585 -8.44936 -7.98392 -7.89554 -6.40188 -3.81036 1.05112 1.76775 2.71863 3.18955 3.20715 3.26436 3.30734 3.32586 3.90596 3.96050 4.17827 4.24004 4.25573 4.56061 4.67282 4.86560 5.02895 5.03580 5.08814 5.13595 5.18995 5.25473 5.27808 5.38303 5.51723 5.55017 5.57736 5.65426 5.68518 5.70130 5.73956 5.88787 5.91922 5.95681 5.99971 6.02338 6.07769 6.28659 6.45610 6.53580 7.20593 7.30997 7.55625 7.56062 8.07207 8.11058 8.26163 8.62972 9.19292 9.55852 10.07512 10.77463 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008901 B = 0.003570 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.036449 B = 7841.805110 C = 9399.190235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C 0.050 3.950 4 O 0.089 5.911 5 N -0.357 5.357 6 C 0.028 3.972 7 C -0.257 4.257 8 C 0.602 3.398 9 O -0.538 6.538 10 N -0.695 5.695 11 C 0.146 3.854 12 H 0.091 0.909 13 C -0.161 4.161 14 C 0.043 3.957 15 N -0.516 5.516 16 C 0.024 3.976 17 C 0.043 3.957 18 C 0.445 3.555 19 O -0.579 6.579 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.200 0.800 35 H 0.403 0.597 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.014 0.986 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.882 7.923 -2.057 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 C -0.014 4.014 4 O 0.030 5.970 5 N -0.063 5.063 6 C -0.155 4.155 7 C -0.265 4.265 8 C 0.389 3.611 9 O -0.417 6.417 10 N -0.345 5.345 11 C 0.041 3.959 12 H 0.109 0.891 13 C -0.220 4.220 14 C -0.086 4.086 15 N -0.239 5.239 16 C -0.124 4.124 17 C -0.088 4.088 18 C 0.230 3.770 19 O -0.463 6.463 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.134 0.866 34 H 0.217 0.783 35 H 0.237 0.763 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.032 0.968 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.517 8.304 -3.846 19.763 hybrid contribution 0.893 -0.386 1.558 1.837 sum -16.624 7.918 -2.288 18.555 Atomic orbital electron populations 1.21693 0.93014 1.02935 1.02377 1.20398 0.97002 0.85590 1.05856 1.24887 0.95295 0.96008 0.85194 1.84560 1.61309 1.17700 1.33413 1.73639 1.16461 0.98594 1.17606 1.26362 1.00309 0.99322 0.89535 1.22080 1.13688 0.95251 0.95462 1.16704 0.77112 0.84260 0.83059 1.90774 1.47455 1.21294 1.82190 1.45492 1.66735 1.16786 1.05491 1.21001 0.94177 1.00854 0.79824 0.89097 1.22151 0.96265 1.01942 1.01620 1.22492 0.89402 1.00199 0.96542 1.61559 1.00774 1.02206 1.59398 1.22515 1.00017 0.93829 0.96017 1.21913 0.97428 0.91581 0.97899 1.19690 0.86464 0.84106 0.86738 1.90480 1.69539 1.44665 1.41608 1.41858 1.21814 1.14832 1.41470 1.19629 0.98364 1.01594 1.23310 0.88046 1.25243 0.99799 0.95389 0.97392 1.69607 1.40261 1.07132 1.37244 0.85940 0.81307 0.77344 0.79758 1.19943 1.20946 1.19902 0.91021 0.91893 0.92497 0.89190 0.86582 0.78334 0.76287 0.91540 0.92443 0.91801 0.90242 0.93253 0.96769 0.88653 0.92166 0.93484 0.89479 0.77531 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.90 37.16 0.37 -0.87 16 2 C -0.05 -0.53 6.05 -27.88 -0.17 -0.70 16 3 C 0.05 0.64 6.80 -34.63 -0.24 0.40 16 4 O 0.09 1.18 11.06 18.67 0.21 1.38 16 5 N -0.36 -4.91 12.01 31.81 0.38 -4.53 16 6 C 0.03 0.34 11.95 -14.72 -0.18 0.16 16 7 C -0.26 -3.46 6.47 -102.89 -0.67 -4.13 16 8 C 0.60 8.61 7.79 -12.53 -0.10 8.51 16 9 O -0.54 -8.88 14.89 5.26 0.08 -8.80 16 10 N -0.70 -8.43 4.80 -54.89 -0.26 -8.69 16 11 C 0.15 1.67 2.53 -67.93 -0.17 1.50 16 12 H 0.09 1.26 6.16 -51.93 -0.32 0.94 16 13 C -0.16 -1.45 9.49 37.16 0.35 -1.10 16 14 C 0.04 0.47 4.52 -3.83 -0.02 0.45 16 15 N -0.52 -7.80 4.20 -244.37 -1.03 -8.83 16 16 C 0.02 0.36 9.19 60.07 0.55 0.91 16 17 C 0.04 0.76 5.30 -4.98 -0.03 0.73 16 18 C 0.44 10.45 7.42 -10.99 -0.08 10.36 16 19 O -0.58 -15.30 13.96 5.54 0.08 -15.23 16 20 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 23 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 24 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 25 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.12 1.42 6.78 -51.93 -0.35 1.06 16 34 H 0.20 1.80 7.88 -52.49 -0.41 1.39 16 35 H 0.40 4.27 7.97 -40.82 -0.33 3.94 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.72 8.00 -51.93 -0.42 0.31 16 40 H 0.05 0.50 8.06 -51.93 -0.42 0.08 16 41 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 42 H 0.09 1.79 5.79 -51.93 -0.30 1.49 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 45 H 0.09 1.50 6.46 -51.93 -0.34 1.16 16 46 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 47 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 394.57 15.07 5.95 5.95 Total: -1.00 -33.31 394.57 -6.50 -39.82 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -6.94 Total: 12.92 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -0.61 Total: 8.23 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.24 Total: -60.52 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.36 Total: -22.64 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.31 -6.50 -39.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322256717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.200 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds