Wall clock time and date at job start Tue Mar 31 2020 22:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50695 * 109.46977 * 2 1 4 4 O 1.33484 * 126.82917 * 269.99982 * 3 2 1 5 5 N 1.20660 * 113.15954 * 180.02562 * 4 3 2 6 6 C 1.30015 * 112.29854 * 359.72784 * 5 4 3 7 7 C 1.37362 * 126.82751 * 90.00094 * 3 2 1 8 8 C 1.47395 * 128.56906 * 359.96308 * 7 3 2 9 9 O 1.21618 * 119.99538 * 359.97438 * 8 7 3 10 10 N 1.34773 * 120.00345 * 180.02562 * 8 7 3 11 11 C 1.46504 * 120.00233 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46671 * 34.12252 * 11 10 8 13 13 C 1.53001 * 109.46998 * 274.12515 * 11 10 8 14 14 C 1.52994 * 109.47407 * 154.12317 * 11 10 8 15 15 N 1.46902 * 109.46937 * 304.36752 * 14 11 10 16 16 C 1.46905 * 110.99864 * 164.38182 * 15 14 11 17 17 C 1.46894 * 110.99997 * 288.33291 * 15 14 11 18 18 C 1.50702 * 109.47345 * 170.00016 * 17 15 14 19 19 O 1.21295 * 119.99910 * 0.02562 * 18 17 15 20 20 N 1.34770 * 120.00357 * 179.97438 * 18 17 15 21 21 C 1.37101 * 120.00326 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99886 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00141 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00035 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00100 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47343 * 59.99460 * 25 23 21 27 27 H 1.48495 * 109.47520 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.47179 * 299.99898 * 25 23 21 29 29 H 1.09004 * 109.46919 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46890 * 299.99515 * 1 2 3 31 31 H 1.08996 * 109.47229 * 60.00286 * 1 2 3 32 32 H 1.08998 * 109.47083 * 239.99724 * 2 1 3 33 33 H 1.09000 * 109.46612 * 120.00098 * 2 1 3 34 34 H 1.08001 * 127.33483 * 180.27362 * 6 5 4 35 35 H 0.97003 * 120.00161 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.46851 * 179.97438 * 13 11 10 37 37 H 1.08997 * 109.47290 * 299.99586 * 13 11 10 38 38 H 1.09002 * 109.46970 * 60.00015 * 13 11 10 39 39 H 1.09002 * 109.46769 * 64.36405 * 14 11 10 40 40 H 1.08997 * 109.47286 * 184.36700 * 14 11 10 41 41 H 1.08997 * 109.46986 * 54.81518 * 16 15 14 42 42 H 1.09005 * 109.46725 * 174.81903 * 16 15 14 43 43 H 1.09006 * 109.46780 * 294.81202 * 16 15 14 44 44 H 1.08997 * 109.47303 * 290.00197 * 17 15 14 45 45 H 1.08994 * 109.47338 * 50.00250 * 17 15 14 46 46 H 0.97003 * 120.00382 * 0.02562 * 20 18 17 47 47 H 0.97008 * 119.99796 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2990 2.1752 -1.0684 5 7 2.6903 3.2804 -0.7833 6 6 2.7503 3.4661 0.5021 7 6 2.3068 2.1971 1.0995 8 6 2.1823 1.8469 2.5258 9 8 1.7903 0.7418 2.8486 10 7 2.5017 2.7517 3.4723 11 6 2.3774 2.4038 4.8900 12 1 2.6155 1.3490 5.0274 13 6 0.9443 2.6682 5.3561 14 6 3.3463 3.2566 5.7113 15 7 4.7106 3.0821 5.1951 16 6 5.6013 4.1384 5.6940 17 6 5.2337 1.7509 5.5295 18 6 6.5219 1.5154 4.7837 19 8 6.9612 2.3725 4.0464 20 7 7.1863 0.3528 4.9366 21 6 8.3585 0.1388 4.2585 22 1 8.7497 0.9020 3.6020 23 6 9.0432 -1.0600 4.4158 24 7 8.5675 -1.9884 5.2149 25 14 10.6406 -1.3513 3.4924 26 1 11.6331 -0.3175 3.8817 27 1 11.1697 -2.6969 3.8307 28 1 10.3895 -1.2707 2.0310 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.0614 4.3608 1.0209 35 1 2.8140 3.6333 3.2148 36 1 0.8517 2.4089 6.4108 37 1 0.7062 3.7229 5.2187 38 1 0.2540 2.0605 4.7710 39 1 3.0607 4.3058 5.6356 40 1 3.3101 2.9445 6.7550 41 1 5.5614 4.1629 6.7830 42 1 6.6226 3.9343 5.3723 43 1 5.2809 5.1016 5.2968 44 1 5.4189 1.6921 6.6020 45 1 4.5050 0.9920 5.2445 46 1 6.8352 -0.3326 5.5265 47 1 9.0454 -2.8255 5.3244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322256717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:22 Heat of formation + Delta-G solvation = -34.278698 kcal Electronic energy + Delta-G solvation = -30167.767612 eV Core-core repulsion = 25967.090052 eV Total energy + Delta-G solvation = -4200.677559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.94636 -40.89017 -40.23105 -38.28283 -36.20475 -35.72288 -35.41452 -34.71570 -33.27761 -32.17888 -31.03839 -29.58342 -27.94977 -26.60806 -26.14283 -24.96063 -23.81737 -22.89208 -21.66632 -21.39114 -20.82197 -19.84504 -19.09102 -18.74406 -17.91702 -17.43205 -17.25546 -16.65795 -16.58960 -16.11051 -15.81378 -15.79007 -15.44284 -15.31660 -15.18256 -15.02298 -14.66453 -14.44377 -14.10539 -13.69743 -13.56512 -13.43558 -13.37338 -13.09487 -12.93797 -12.87664 -12.73817 -12.65711 -12.48089 -12.46661 -12.37038 -12.14220 -11.88369 -11.68259 -11.45794 -11.43618 -11.10024 -10.54012 -10.26298 -10.00422 -9.95477 -9.19085 -8.46708 -5.95424 0.03584 0.77474 1.37969 1.39518 1.50435 1.73675 2.05890 2.16863 2.27221 2.31495 2.79842 3.20115 3.24767 3.30150 3.38845 3.59338 3.81965 4.00159 4.14345 4.20501 4.21116 4.26153 4.34768 4.37849 4.43946 4.52609 4.60407 4.67679 4.72851 4.74295 4.80980 4.82991 4.86303 4.97216 5.07570 5.12186 5.23297 5.28327 5.33643 5.39684 5.55883 5.87950 6.07035 6.22818 6.56451 6.60097 7.11227 7.12718 7.23303 7.56519 8.12177 8.70673 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008901 B = 0.003570 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.036449 B = 7841.805110 C = 9399.190235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 C 0.051 3.949 4 O 0.083 5.917 5 N -0.378 5.378 6 C 0.037 3.963 7 C -0.281 4.281 8 C 0.596 3.404 9 O -0.569 6.569 10 N -0.687 5.687 11 C 0.145 3.855 12 H 0.063 0.937 13 C -0.151 4.151 14 C 0.048 3.952 15 N -0.530 5.530 16 C 0.029 3.971 17 C 0.058 3.942 18 C 0.442 3.558 19 O -0.610 6.610 20 N -0.577 5.577 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.991 3.009 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.274 1.274 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.228 0.772 35 H 0.411 0.589 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.033 0.967 42 H 0.049 0.951 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.394 0.606 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.832 8.866 -1.410 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.089 4.089 3 C -0.013 4.013 4 O 0.027 5.973 5 N -0.086 5.086 6 C -0.146 4.146 7 C -0.288 4.288 8 C 0.383 3.617 9 O -0.450 6.450 10 N -0.337 5.337 11 C 0.040 3.960 12 H 0.081 0.919 13 C -0.209 4.209 14 C -0.079 4.079 15 N -0.254 5.254 16 C -0.119 4.119 17 C -0.073 4.073 18 C 0.230 3.770 19 O -0.496 6.496 20 N -0.214 5.214 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.814 3.186 26 H -0.195 1.195 27 H -0.194 1.194 28 H -0.200 1.200 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.245 0.755 35 H 0.247 0.753 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.110 0.890 46 H 0.227 0.773 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.489 9.264 -3.180 20.923 hybrid contribution 1.145 -0.617 1.375 1.892 sum -17.345 8.646 -1.805 19.464 Atomic orbital electron populations 1.21657 0.91480 1.04002 1.02154 1.20495 0.98232 0.84380 1.05831 1.25331 0.94283 0.96659 0.85031 1.84541 1.61547 1.17733 1.33517 1.73621 1.17613 0.99028 1.18352 1.26821 0.98945 0.99741 0.89103 1.22208 1.14983 0.96209 0.95407 1.16880 0.76952 0.84170 0.83661 1.90752 1.49046 1.22521 1.82673 1.45506 1.65801 1.16728 1.05652 1.21085 0.95982 0.99492 0.79461 0.91866 1.22058 0.93826 1.02868 1.02191 1.22585 0.86353 1.01925 0.97072 1.61501 1.02612 1.00749 1.60582 1.22404 0.97554 0.94649 0.97255 1.21709 0.94153 0.93591 0.97897 1.20756 0.87630 0.82715 0.85927 1.90456 1.70799 1.45443 1.42919 1.41955 1.21790 1.15775 1.41909 1.19600 1.00127 1.01955 1.24515 0.90368 1.26011 1.02605 0.94676 0.97910 1.69673 1.41366 1.07409 1.37778 0.85028 0.77472 0.77798 0.78279 1.19516 1.19412 1.19960 0.89327 0.93406 0.91322 0.87133 0.88557 0.75539 0.75299 0.89850 0.90463 0.93506 0.87198 0.91366 0.94822 0.93191 0.89662 0.91502 0.89011 0.77312 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.90 71.98 0.71 -1.56 16 2 C -0.05 -1.07 6.05 29.85 0.18 -0.89 16 3 C 0.05 1.31 6.80 25.48 0.17 1.49 16 4 O 0.08 2.18 11.06 77.06 0.85 3.04 16 5 N -0.38 -10.24 12.01 -54.19 -0.65 -10.89 16 6 C 0.04 0.87 11.95 87.29 1.04 1.92 16 7 C -0.28 -7.54 6.47 -18.74 -0.12 -7.66 16 8 C 0.60 17.09 7.79 86.65 0.67 17.77 16 9 O -0.57 -19.25 14.89 -4.09 -0.06 -19.31 16 10 N -0.69 -15.84 4.80 -445.82 -2.14 -17.98 16 11 C 0.14 3.03 2.53 44.99 0.11 3.14 16 12 H 0.06 1.71 6.16 -2.38 -0.01 1.69 16 13 C -0.15 -2.34 9.49 71.98 0.68 -1.66 16 14 C 0.05 0.90 4.52 86.30 0.39 1.29 16 15 N -0.53 -15.02 4.20 -927.06 -3.89 -18.91 16 16 C 0.03 0.81 9.19 127.69 1.17 1.98 16 17 C 0.06 1.99 5.30 85.56 0.45 2.45 16 18 C 0.44 21.17 7.42 87.66 0.65 21.82 16 19 O -0.61 -33.15 13.96 -3.08 -0.04 -33.19 16 20 N -0.58 -30.29 5.29 -306.99 -1.62 -31.92 16 21 C -0.33 -19.20 9.68 84.04 0.81 -18.39 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 24 N -0.92 -50.74 13.05 21.66 0.28 -50.46 16 25 Si 0.99 43.74 29.55 68.60 2.03 45.76 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 29 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.10 2.45 6.78 -2.39 -0.02 2.43 16 34 H 0.23 3.71 7.88 -2.91 -0.02 3.69 16 35 H 0.41 7.92 7.97 -92.71 -0.74 7.18 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.11 1.46 8.00 -2.39 -0.02 1.44 16 40 H 0.07 1.09 8.06 -2.39 -0.02 1.07 16 41 H 0.03 0.79 8.13 -2.39 -0.02 0.77 16 42 H 0.05 1.87 5.79 -2.38 -0.01 1.85 16 43 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 45 H 0.09 3.12 6.46 -2.39 -0.02 3.10 16 46 H 0.39 19.91 7.90 -92.71 -0.73 19.18 16 47 H 0.28 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -74.64 394.57 1.71 -72.93 By element: Atomic # 1 Polarization: 39.91 SS G_CDS: -0.46 Total: 39.46 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 7.41 Total: 21.47 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -8.02 Total: -130.16 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: 0.75 Total: -49.46 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -74.64 1.71 -72.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322256717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.654 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds