Wall clock time and date at job start Tue Mar 31 2020 21:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.53735 * 2 1 4 4 C 1.53126 * 109.52270 * 295.70584 * 3 2 1 5 5 C 1.53030 * 109.27833 * 177.62058 * 4 3 2 6 6 N 1.46847 * 109.52507 * 300.81694 * 5 4 3 7 7 C 1.46899 * 111.00211 * 185.83908 * 6 5 4 8 8 C 1.50703 * 109.47107 * 169.99998 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.46992 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.46846 * 111.19621 * 61.74320 * 6 5 4 21 21 C 1.53036 * 109.52401 * 298.25699 * 20 6 5 22 22 N 1.47314 * 110.60106 * 122.83423 * 2 1 3 23 23 C 1.34521 * 106.62276 * 118.67697 * 22 2 1 24 24 O 1.21533 * 123.77278 * 179.97438 * 23 22 2 25 25 N 1.33793 * 112.45738 * 0.02562 * 23 22 2 26 26 C 1.35121 * 111.68813 * 359.90649 * 25 23 22 27 27 O 1.21231 * 127.33807 * 180.10031 * 26 25 23 28 28 H 1.09003 * 109.47250 * 60.00264 * 1 2 3 29 29 H 1.09008 * 109.47326 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47142 * 299.99926 * 1 2 3 31 31 H 1.08997 * 109.52647 * 175.57476 * 3 2 1 32 32 H 1.09002 * 109.50529 * 57.67815 * 4 3 2 33 33 H 1.08999 * 109.53058 * 297.58086 * 4 3 2 34 34 H 1.09003 * 109.46394 * 180.80277 * 5 4 3 35 35 H 1.09000 * 109.46263 * 60.83485 * 5 4 3 36 36 H 1.09002 * 109.47043 * 50.00018 * 7 6 5 37 37 H 1.09001 * 109.47354 * 289.99956 * 7 6 5 38 38 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 40 40 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 41 41 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 42 42 H 1.08997 * 109.46626 * 58.27651 * 20 6 5 43 43 H 1.09001 * 109.46382 * 178.24532 * 20 6 5 44 44 H 1.08999 * 109.50526 * 299.24199 * 21 20 6 45 45 H 1.09000 * 109.50273 * 179.12016 * 21 20 6 46 46 H 0.97000 * 126.68538 * 298.71262 * 22 2 1 47 47 H 0.97005 * 124.18062 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4327 0.0000 4 6 1.6600 2.1315 -1.3004 5 6 2.1483 3.5815 -1.2689 6 7 1.5585 4.2730 -0.1155 7 6 1.8946 5.7030 -0.1307 8 6 1.0812 6.4213 0.9151 9 8 0.2991 5.8028 1.6054 10 7 1.2231 7.7510 1.0831 11 6 0.4328 8.4492 2.1001 12 6 0.7775 9.9162 2.0844 13 1 1.5114 10.2910 1.3864 14 6 0.1550 10.7800 2.9605 15 7 -0.7390 10.3236 3.8101 16 14 0.5817 12.5985 2.9405 17 1 0.2765 13.1639 1.6016 18 1 -0.2192 13.3062 3.9715 19 1 2.0274 12.7710 3.2329 20 6 1.9733 3.6484 1.1471 21 6 1.4797 2.2004 1.1878 22 7 2.0483 -0.7477 1.1586 23 6 2.7627 -1.7752 0.6653 24 8 3.3327 -2.5957 1.3573 25 7 2.7766 -1.7923 -0.6725 26 6 2.0640 -0.7688 -1.1924 27 8 1.8877 -0.5164 -2.3650 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.1536 1.4146 0.0793 32 1 0.5745 2.1152 -1.3983 33 1 2.1097 1.6144 -2.1480 34 1 1.8480 4.0859 -2.1873 35 1 3.2350 3.5970 -1.1849 36 1 1.6710 6.1183 -1.1134 37 1 2.9557 5.8292 0.0843 38 1 1.8489 8.2456 0.5312 39 1 0.6571 8.0342 3.0828 40 1 -0.6284 8.3226 1.8858 41 1 -1.1766 10.9313 4.4267 42 1 3.0608 3.6636 1.2199 43 1 1.5458 4.2014 1.9835 44 1 0.3914 2.1851 1.1290 45 1 1.8012 1.7324 2.1182 46 1 1.9024 -0.5399 2.0948 47 1 3.2397 -2.4585 -1.2042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322422674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:41 Heat of formation + Delta-G solvation = -111.118507 kcal Electronic energy + Delta-G solvation = -29783.304812 eV Core-core repulsion = 25579.295229 eV Total energy + Delta-G solvation = -4204.009584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.63809 -40.88817 -39.95813 -39.32114 -37.57119 -36.18002 -35.83346 -34.31729 -33.77468 -31.78968 -31.22600 -29.75147 -27.90643 -26.33769 -24.87180 -24.40553 -23.84705 -23.26676 -21.81517 -21.27329 -20.31360 -19.29176 -18.87344 -17.83072 -17.70367 -17.46209 -17.20896 -16.95769 -16.69789 -16.49951 -16.43548 -15.97648 -15.84960 -15.61088 -15.32901 -15.10629 -14.49975 -14.38532 -14.05907 -14.04679 -13.86149 -13.70150 -13.56439 -13.05232 -12.97773 -12.83513 -12.71545 -12.60360 -12.26571 -12.20560 -12.08323 -11.87442 -11.75106 -11.49436 -11.48351 -11.38760 -10.97707 -10.76800 -10.56728 -10.42952 -9.74893 -9.19004 -8.27461 -6.43697 0.48940 1.40581 1.44041 1.47719 1.55844 1.86611 1.91409 2.07088 2.30431 2.50146 2.85698 3.07294 3.11571 3.36137 3.58175 3.87345 3.96161 4.03605 4.18569 4.28495 4.31695 4.38228 4.41233 4.52937 4.59960 4.67663 4.72436 4.73654 4.85274 4.97352 5.00785 5.07089 5.13062 5.14723 5.19547 5.26815 5.28473 5.47273 5.52409 5.74608 5.76266 5.84995 5.88075 6.03679 6.23672 6.35257 6.67843 7.00844 7.09142 7.26004 7.59083 8.84293 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029554 B = 0.001976 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.187062 B =14169.757540 C =14566.634175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.132 3.868 3 C -0.073 4.073 4 C -0.113 4.113 5 C 0.059 3.941 6 N -0.535 5.535 7 C 0.048 3.952 8 C 0.494 3.506 9 O -0.581 6.581 10 N -0.712 5.712 11 C 0.270 3.730 12 C -0.556 4.556 13 H 0.083 0.917 14 C 0.003 3.997 15 N -0.930 5.930 16 Si 0.983 3.017 17 H -0.262 1.262 18 H -0.287 1.287 19 H -0.262 1.262 20 C 0.051 3.949 21 C -0.101 4.101 22 N -0.702 5.702 23 C 0.707 3.293 24 O -0.584 6.584 25 N -0.673 5.673 26 C 0.538 3.462 27 O -0.474 6.474 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.126 0.874 37 H 0.081 0.919 38 H 0.407 0.593 39 H -0.014 1.014 40 H -0.014 1.014 41 H 0.268 0.732 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.449 0.551 47 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.472 -21.337 -12.523 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 C -0.092 4.092 4 C -0.151 4.151 5 C -0.068 4.068 6 N -0.261 5.261 7 C -0.082 4.082 8 C 0.281 3.719 9 O -0.461 6.461 10 N -0.363 5.363 11 C 0.147 3.853 12 C -0.594 4.594 13 H 0.101 0.899 14 C -0.196 4.196 15 N -0.569 5.569 16 Si 0.806 3.194 17 H -0.187 1.187 18 H -0.212 1.212 19 H -0.187 1.187 20 C -0.076 4.076 21 C -0.138 4.138 22 N -0.367 5.367 23 C 0.407 3.593 24 O -0.461 6.461 25 N -0.345 5.345 26 C 0.324 3.676 27 O -0.344 6.344 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.144 0.856 37 H 0.099 0.901 38 H 0.242 0.758 39 H 0.004 0.996 40 H 0.004 0.996 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.295 0.705 47 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 7.440 -21.994 -12.175 26.217 hybrid contribution 1.098 0.976 0.553 1.570 sum 8.538 -21.017 -11.621 25.489 Atomic orbital electron populations 1.22132 0.88928 1.04090 1.05726 1.21482 0.98110 0.93001 0.83268 1.21343 1.00597 0.89905 0.97390 1.21764 1.02992 0.93976 0.96332 1.22158 0.96920 0.94597 0.93165 1.61531 1.60636 1.00455 1.03441 1.21926 0.97914 0.89352 0.99058 1.21355 0.83403 0.82237 0.84885 1.90603 1.39427 1.67013 1.49053 1.46212 1.43474 1.07994 1.38655 1.18463 0.89597 0.91408 0.85816 1.21609 1.24853 0.92335 1.20602 0.89879 1.26053 0.94333 1.04903 0.94359 1.70128 1.27319 1.37717 1.21734 0.85236 0.78618 0.77268 0.78271 1.18678 1.21215 1.18707 1.22151 0.97224 0.95927 0.92328 1.21596 1.01936 0.92934 0.97374 1.45675 1.53451 1.27651 1.09892 1.15893 0.79426 0.82181 0.81838 1.91048 1.50357 1.43152 1.61526 1.44336 1.51018 1.30855 1.08242 1.20896 0.76655 0.80233 0.89779 1.90823 1.57185 1.68930 1.17440 0.89314 0.90895 0.88898 0.90059 0.90287 0.89665 0.89176 0.93958 0.85586 0.90076 0.75772 0.99608 0.99642 0.92306 0.94775 0.91885 0.90363 0.90031 0.70464 0.71692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.24 71.98 0.59 -0.97 16 2 C 0.13 1.53 0.74 2.98 0.00 1.53 16 3 C -0.07 -0.96 1.85 -10.71 -0.02 -0.98 16 4 C -0.11 -1.65 4.72 30.65 0.14 -1.51 16 5 C 0.06 0.96 5.46 86.32 0.47 1.43 16 6 N -0.54 -12.50 4.40 -900.94 -3.96 -16.46 16 7 C 0.05 1.18 5.45 85.56 0.47 1.64 16 8 C 0.49 18.56 7.50 87.66 0.66 19.22 16 9 O -0.58 -27.05 14.32 -3.02 -0.04 -27.09 16 10 N -0.71 -28.84 5.55 -466.78 -2.59 -31.43 16 11 C 0.27 14.53 5.43 85.63 0.46 15.00 16 12 C -0.56 -29.75 9.28 25.60 0.24 -29.52 16 13 H 0.08 3.99 7.60 -2.91 -0.02 3.97 16 14 C 0.00 0.17 5.46 84.66 0.46 0.63 16 15 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 16 Si 0.98 41.74 29.54 68.60 2.03 43.77 16 17 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 18 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 C 0.05 1.21 5.10 86.33 0.44 1.65 16 21 C -0.10 -1.68 4.89 30.65 0.15 -1.53 16 22 N -0.70 -7.98 5.66 -439.82 -2.49 -10.47 16 23 C 0.71 11.26 9.00 179.44 1.61 12.87 16 24 O -0.58 -13.88 18.04 -3.82 -0.07 -13.94 16 25 N -0.67 -8.26 5.72 -440.67 -2.52 -10.78 16 26 C 0.54 7.36 7.21 87.89 0.63 8.00 16 27 O -0.47 -8.45 15.90 -2.88 -0.05 -8.50 16 28 H 0.09 0.99 6.61 -2.39 -0.02 0.97 16 29 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.09 0.91 6.42 -2.39 -0.02 0.90 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.25 6.53 -2.39 -0.02 1.24 16 33 H 0.08 1.25 6.05 -2.39 -0.01 1.24 16 34 H 0.09 1.31 8.02 -2.39 -0.02 1.29 16 35 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.13 2.44 7.99 -2.39 -0.02 2.42 16 37 H 0.08 1.63 8.12 -2.39 -0.02 1.61 16 38 H 0.41 13.42 8.32 -92.71 -0.77 12.65 16 39 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 40 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 42 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 2.03 5.78 -2.39 -0.01 2.01 16 44 H 0.08 1.44 6.32 -2.39 -0.02 1.43 16 45 H 0.08 1.09 7.60 -2.39 -0.02 1.07 16 46 H 0.45 3.86 8.54 -92.71 -0.79 3.07 16 47 H 0.44 3.82 8.96 -92.70 -0.83 2.99 16 Total: -1.00 -77.08 374.07 -4.44 -81.52 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -1.35 Total: 21.24 kcal Atomic # 6 Polarization: 21.15 SS G_CDS: 6.32 Total: 27.47 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -11.28 Total: -124.47 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -0.16 Total: -49.53 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -77.08 -4.44 -81.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322422674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.600 kcal (2) G-P(sol) polarization free energy of solvation -77.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds