Wall clock time and date at job start Tue Mar 31 2020 21:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 110.53540 * 2 1 4 4 C 1.53116 * 109.52612 * 172.04299 * 3 2 1 5 5 C 1.53039 * 109.27817 * 182.50564 * 4 3 2 6 6 N 1.46852 * 109.57742 * 59.08333 * 5 4 3 7 7 C 1.46903 * 111.00007 * 174.19427 * 6 5 4 8 8 C 1.50700 * 109.46804 * 294.21184 * 7 6 5 9 9 O 1.21279 * 120.00278 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99583 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00081 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47383 * 179.97438 * 11 10 8 13 13 H 1.08006 * 119.99971 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00174 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99840 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99835 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47482 * 89.99754 * 16 14 12 18 18 H 1.48506 * 109.46965 * 209.99844 * 16 14 12 19 19 H 1.48504 * 109.47135 * 329.99150 * 16 14 12 20 20 C 1.46849 * 111.19547 * 298.29441 * 6 5 4 21 21 C 1.53030 * 109.52597 * 61.73979 * 20 6 5 22 22 N 1.47314 * 110.59875 * 237.17081 * 2 1 3 23 23 C 1.34522 * 106.62026 * 241.31823 * 22 2 1 24 24 O 1.21539 * 123.77037 * 180.02562 * 23 22 2 25 25 N 1.33794 * 112.46020 * 359.97438 * 23 22 2 26 26 C 1.34774 * 111.64167 * 0.02562 * 25 23 22 27 27 O 1.21236 * 127.15396 * 179.97438 * 26 25 23 28 28 H 1.09007 * 109.46842 * 182.12828 * 1 2 3 29 29 H 1.09001 * 109.47075 * 302.12260 * 1 2 3 30 30 H 1.08998 * 109.47391 * 62.12580 * 1 2 3 31 31 H 1.09001 * 109.52430 * 292.17530 * 3 2 1 32 32 H 1.09005 * 109.50770 * 302.38416 * 4 3 2 33 33 H 1.09003 * 109.50077 * 62.50106 * 4 3 2 34 34 H 1.09002 * 109.40924 * 299.07001 * 5 4 3 35 35 H 1.08997 * 109.46597 * 179.13299 * 5 4 3 36 36 H 1.08994 * 109.46917 * 54.21345 * 7 6 5 37 37 H 1.08996 * 109.46687 * 174.21227 * 7 6 5 38 38 H 0.97000 * 119.99974 * 359.97438 * 10 8 7 39 39 H 1.09001 * 109.46961 * 299.99917 * 11 10 8 40 40 H 1.09002 * 109.47136 * 59.98978 * 11 10 8 41 41 H 0.97001 * 119.99671 * 180.02562 * 15 14 12 42 42 H 1.08996 * 109.46127 * 301.71789 * 20 6 5 43 43 H 1.09001 * 109.45772 * 181.75359 * 20 6 5 44 44 H 1.08996 * 109.50487 * 180.87515 * 21 20 6 45 45 H 1.09001 * 109.50686 * 60.75689 * 21 20 6 46 46 H 0.97002 * 126.68996 * 61.35745 * 22 2 1 47 47 H 0.96998 * 124.17737 * 179.72844 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4327 0.0000 4 6 3.5846 1.4106 0.1998 5 6 4.1070 2.8478 0.2615 6 7 3.4585 3.5600 1.3699 7 6 4.0362 4.8993 1.5449 8 6 5.4724 4.7734 1.9838 9 8 5.9659 3.6761 2.1363 10 7 6.2080 5.8803 2.2077 11 6 7.6043 5.7580 2.6339 12 6 8.1969 7.1319 2.8134 13 1 7.5938 8.0086 2.6282 14 6 9.5092 7.2698 3.2131 15 7 10.2437 6.2023 3.4382 16 14 10.2435 8.9729 3.4364 17 1 10.0301 9.4246 4.8348 18 1 11.6995 8.9258 3.1481 19 1 9.5847 9.9222 2.5035 20 6 2.0050 3.6351 1.1747 21 6 1.4196 2.2216 1.1419 22 7 2.0482 -0.7476 -1.1587 23 6 2.7627 -1.7751 -0.6654 24 8 3.3327 -2.5956 -1.3576 25 7 2.7767 -1.7923 0.6724 26 6 2.0669 -0.7702 1.1900 27 8 1.8937 -0.5193 2.3634 28 1 -0.3633 -1.0270 0.0382 29 1 -0.3633 0.5464 0.8704 30 1 -0.3634 0.4804 -0.9084 31 1 1.8313 1.9099 -0.9513 32 1 3.8216 0.8979 1.1320 33 1 4.0537 0.8873 -0.6334 34 1 3.8829 3.3553 -0.6768 35 1 5.1855 2.8357 0.4191 36 1 3.9911 5.4406 0.5999 37 1 3.4711 5.4425 2.3022 38 1 5.8131 6.7579 2.0861 39 1 7.6497 5.2161 3.5785 40 1 8.1692 5.2152 1.8761 41 1 11.1669 6.2994 3.7197 42 1 1.7908 4.1389 0.2322 43 1 1.5568 4.1948 1.9956 44 1 0.3430 2.2772 0.9814 45 1 1.6215 1.7219 2.0893 46 1 1.9031 -0.5392 -2.0949 47 1 3.2370 -2.4604 1.2039 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322422675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:45 Heat of formation + Delta-G solvation = -113.282733 kcal Electronic energy + Delta-G solvation = -30095.008661 eV Core-core repulsion = 25890.905229 eV Total energy + Delta-G solvation = -4204.103431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.71504 -40.89148 -39.95763 -39.21639 -37.57030 -36.17866 -35.81255 -34.35457 -33.84170 -32.13334 -31.08008 -29.80191 -27.90364 -26.11277 -24.84233 -24.00566 -23.87267 -23.78243 -21.86740 -21.30662 -20.40261 -19.32386 -18.90543 -17.91513 -17.67442 -17.49998 -17.29536 -16.87734 -16.67286 -16.55222 -16.50297 -15.92726 -15.59758 -15.58059 -15.22856 -15.06342 -14.67926 -14.37484 -14.18934 -14.09538 -13.88330 -13.75544 -13.45766 -13.21115 -12.93065 -12.82867 -12.70712 -12.56669 -12.23558 -12.22925 -12.16533 -12.06732 -11.61155 -11.50334 -11.48978 -11.37391 -11.03386 -10.80335 -10.64426 -10.39564 -9.79054 -9.16203 -8.29671 -6.46553 0.54334 1.42258 1.42454 1.45183 1.56287 1.83245 1.93665 2.13649 2.29021 2.49101 2.86742 3.05212 3.08531 3.34623 3.57090 3.87190 3.96852 4.06013 4.16996 4.25289 4.29193 4.38647 4.42384 4.51373 4.58918 4.70231 4.74143 4.77887 4.86101 4.94226 5.00001 5.04058 5.07145 5.11926 5.15235 5.23976 5.27440 5.47158 5.50007 5.71733 5.79413 5.85153 5.87908 6.03333 6.27022 6.39330 6.65450 6.98035 7.10274 7.23586 7.57086 8.82649 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021568 B = 0.002213 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.936139 B =12648.728836 C =13294.723958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.133 3.867 3 C -0.072 4.072 4 C -0.110 4.110 5 C 0.059 3.941 6 N -0.547 5.547 7 C 0.052 3.948 8 C 0.490 3.510 9 O -0.588 6.588 10 N -0.710 5.710 11 C 0.269 3.731 12 C -0.554 4.554 13 H 0.086 0.914 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.986 3.014 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.253 1.253 20 C 0.057 3.943 21 C -0.116 4.116 22 N -0.697 5.697 23 C 0.705 3.295 24 O -0.586 6.586 25 N -0.683 5.683 26 C 0.528 3.472 27 O -0.485 6.485 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.408 0.592 39 H -0.018 1.018 40 H -0.016 1.016 41 H 0.268 0.732 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.114 0.886 45 H 0.060 0.940 46 H 0.453 0.547 47 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.852 -7.064 -11.593 30.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.043 3.957 3 C -0.091 4.091 4 C -0.148 4.148 5 C -0.069 4.069 6 N -0.273 5.273 7 C -0.079 4.079 8 C 0.277 3.723 9 O -0.468 6.468 10 N -0.361 5.361 11 C 0.146 3.854 12 C -0.592 4.592 13 H 0.104 0.896 14 C -0.198 4.198 15 N -0.572 5.572 16 Si 0.809 3.191 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.177 1.177 20 C -0.070 4.070 21 C -0.154 4.154 22 N -0.362 5.362 23 C 0.405 3.595 24 O -0.463 6.463 25 N -0.353 5.353 26 C 0.315 3.685 27 O -0.355 6.355 28 H 0.086 0.914 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.142 0.858 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.146 0.854 38 H 0.244 0.756 39 H 0.000 1.000 40 H 0.002 0.998 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.132 0.868 45 H 0.078 0.922 46 H 0.300 0.700 47 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -27.100 -8.382 -10.768 30.342 hybrid contribution 1.502 0.619 -0.250 1.644 sum -25.598 -7.763 -11.018 28.929 Atomic orbital electron populations 1.22132 0.87267 1.04408 1.06547 1.21632 0.98858 0.92822 0.82397 1.21469 0.93595 0.91351 1.02683 1.21608 0.96302 0.96316 1.00552 1.22017 0.98989 0.94290 0.91598 1.61448 1.05254 1.16042 1.44556 1.21917 0.90399 0.92040 1.03522 1.21535 0.89726 0.83861 0.77147 1.90623 1.74391 1.28238 1.53574 1.46189 1.13172 1.09050 1.67731 1.18464 0.78003 0.96677 0.92242 1.21635 0.97699 0.92275 1.47603 0.89634 1.26109 0.97405 1.02090 0.94219 1.70153 1.09128 1.31639 1.46260 0.85142 0.77130 0.77812 0.79038 1.19604 1.21078 1.17686 1.22227 0.84945 0.97752 1.02037 1.21843 1.01173 0.94382 0.97995 1.45571 1.53441 1.27300 1.09925 1.15938 0.79487 0.82494 0.81622 1.91039 1.50302 1.43434 1.61522 1.44430 1.51270 1.30890 1.08712 1.21207 0.76754 0.80226 0.90356 1.90838 1.57758 1.68912 1.17987 0.91445 0.88720 0.86983 0.85779 0.94485 0.91456 0.93173 0.93104 0.89370 0.85373 0.75596 0.99978 0.99843 0.92308 0.92217 0.89171 0.86795 0.92155 0.69988 0.72323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 8.49 71.98 0.61 -0.09 16 2 C 0.13 1.50 0.85 2.98 0.00 1.50 16 3 C -0.07 -0.88 1.94 -10.71 -0.02 -0.90 16 4 C -0.11 -2.43 4.90 30.65 0.15 -2.28 16 5 C 0.06 1.54 5.10 86.33 0.44 1.98 16 6 N -0.55 -13.79 4.40 -900.93 -3.96 -17.75 16 7 C 0.05 1.31 5.45 85.56 0.47 1.78 16 8 C 0.49 19.52 7.50 87.66 0.66 20.17 16 9 O -0.59 -29.69 14.33 -3.03 -0.04 -29.73 16 10 N -0.71 -29.84 5.55 -466.79 -2.59 -32.43 16 11 C 0.27 14.99 5.43 85.63 0.46 15.45 16 12 C -0.55 -30.28 9.28 25.60 0.24 -30.04 16 13 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 14 C 0.00 0.06 5.46 84.65 0.46 0.52 16 15 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 16 Si 0.99 42.44 29.54 68.60 2.03 44.46 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 18 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 20 C 0.06 0.85 5.46 86.32 0.47 1.32 16 21 C -0.12 -1.50 4.63 30.65 0.14 -1.36 16 22 N -0.70 -7.77 5.49 -439.83 -2.41 -10.18 16 23 C 0.71 13.59 8.99 179.44 1.61 15.20 16 24 O -0.59 -15.89 18.04 -3.84 -0.07 -15.96 16 25 N -0.68 -12.54 5.70 -441.11 -2.52 -15.06 16 26 C 0.53 10.01 5.61 87.94 0.49 10.50 16 27 O -0.48 -12.26 16.37 -2.89 -0.05 -12.31 16 28 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.09 0.44 6.37 -2.39 -0.02 0.42 16 30 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.12 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.04 1.08 6.91 -2.38 -0.02 1.06 16 33 H 0.07 1.44 7.89 -2.39 -0.02 1.42 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.86 5.78 -2.39 -0.01 1.85 16 36 H 0.09 1.72 8.12 -2.39 -0.02 1.70 16 37 H 0.13 2.53 7.99 -2.39 -0.02 2.51 16 38 H 0.41 13.79 8.32 -92.71 -0.77 13.02 16 39 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 40 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 41 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 1.17 8.02 -2.39 -0.02 1.15 16 44 H 0.11 0.63 6.53 -2.39 -0.02 0.61 16 45 H 0.06 1.22 6.34 -2.39 -0.02 1.21 16 46 H 0.45 2.59 8.96 -92.71 -0.83 1.76 16 47 H 0.43 7.15 8.96 -92.71 -0.83 6.32 16 Total: -1.00 -86.73 376.20 -4.53 -91.27 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -1.39 Total: 20.80 kcal Atomic # 6 Polarization: 27.57 SS G_CDS: 6.19 Total: 33.76 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -11.20 Total: -132.30 kcal Atomic # 8 Polarization: -57.83 SS G_CDS: -0.16 Total: -57.99 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -86.73 -4.53 -91.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322422675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.017 kcal (2) G-P(sol) polarization free energy of solvation -86.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds