Wall clock time and date at job start Tue Mar 31 2020 21:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29952 * 126.28571 * 2 1 4 4 O 1.21298 * 110.25156 * 180.02562 * 3 2 1 5 5 C 1.33645 * 109.81238 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.55354 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47114 * 269.97637 * 6 5 4 8 8 C 1.50704 * 109.47153 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99674 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99845 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99707 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47049 * 175.90708 * 11 10 8 13 13 N 1.46501 * 109.54439 * 305.05470 * 12 11 10 14 14 C 1.36931 * 120.00116 * 300.70057 * 13 12 11 15 15 H 1.08000 * 120.00093 * 354.06598 * 14 13 12 16 16 C 1.38805 * 120.00154 * 174.07911 * 14 13 12 17 17 N 1.31626 * 120.00033 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00378 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47107 * 89.99535 * 18 16 14 20 20 H 1.48502 * 109.47594 * 209.99798 * 18 16 14 21 21 H 1.48507 * 109.46744 * 329.99930 * 18 16 14 22 22 C 1.53181 * 109.54521 * 184.87999 * 12 11 10 23 23 C 1.53105 * 109.15890 * 183.23914 * 22 12 11 24 24 O 1.42904 * 109.48421 * 57.47707 * 23 22 12 25 25 C 1.42904 * 114.09788 * 298.88692 * 24 23 22 26 26 C 1.53086 * 109.41706 * 61.15959 * 25 24 23 27 27 N 1.31127 * 106.89535 * 0.02562 * 5 4 3 28 28 H 1.09003 * 109.47225 * 89.97653 * 1 2 3 29 29 H 1.09005 * 109.46798 * 209.97230 * 1 2 3 30 30 H 1.08999 * 109.47340 * 329.97224 * 1 2 3 31 31 H 1.09003 * 109.47156 * 29.97577 * 6 5 4 32 32 H 1.08998 * 109.47046 * 149.97633 * 6 5 4 33 33 H 1.08991 * 109.47432 * 300.00144 * 7 6 5 34 34 H 1.09008 * 109.47120 * 60.00100 * 7 6 5 35 35 H 0.96997 * 120.00328 * 0.02562 * 10 8 7 36 36 H 1.09008 * 109.47215 * 295.90293 * 11 10 8 37 37 H 1.08994 * 109.47415 * 55.90199 * 11 10 8 38 38 H 0.97002 * 119.99874 * 120.69279 * 13 12 11 39 39 H 0.97000 * 119.99612 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.52197 * 303.05833 * 22 12 11 41 41 H 1.09001 * 109.52210 * 63.24409 * 22 12 11 42 42 H 1.08998 * 109.40800 * 297.49256 * 23 22 12 43 43 H 1.09001 * 109.49031 * 177.50834 * 23 22 12 44 44 H 1.09001 * 109.47755 * 301.17825 * 25 24 23 45 45 H 1.09001 * 109.48926 * 181.14819 * 25 24 23 46 46 H 1.08998 * 109.52568 * 182.48835 * 26 25 24 47 47 H 1.09005 * 109.57242 * 62.32406 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7125 -0.0005 5 6 3.5299 -0.6211 -0.0003 6 6 4.7970 -1.4369 -0.0003 7 6 5.2254 -1.7137 -1.4428 8 6 6.4929 -2.5289 -1.4427 9 8 7.0029 -2.8567 -0.3923 10 7 7.0589 -2.8946 -2.6099 11 6 8.2907 -3.6877 -2.6098 12 6 8.6631 -4.0514 -4.0484 13 7 7.5333 -4.7271 -4.6913 14 6 7.0395 -5.8895 -4.1620 15 1 7.5410 -6.3593 -3.3289 16 6 5.8945 -6.4641 -4.6964 17 7 5.2831 -5.8914 -5.7117 18 14 5.2213 -8.0501 -3.9749 19 1 4.2559 -7.7309 -2.8926 20 1 4.5337 -8.8253 -5.0387 21 1 6.3390 -8.8550 -3.4198 22 6 9.8805 -4.9812 -4.0432 23 6 10.2949 -5.2745 -5.4876 24 8 10.5721 -4.0459 -6.1628 25 6 9.4552 -3.1578 -6.2402 26 6 9.0083 -2.7777 -4.8262 27 7 2.3030 -1.0840 -0.0002 28 1 -0.3634 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3634 0.8897 0.5143 31 1 5.5844 -0.8850 0.5131 32 1 4.6208 -2.3816 0.5141 33 1 4.4381 -2.2654 -1.9561 34 1 5.4016 -0.7688 -1.9571 35 1 6.6507 -2.6328 -3.4499 36 1 9.0969 -3.1067 -2.1617 37 1 8.1358 -4.5994 -2.0329 38 1 7.1349 -4.3510 -5.4918 39 1 4.4828 -6.2927 -6.0849 40 1 10.7055 -4.4981 -3.5198 41 1 9.6246 -5.9135 -3.5398 42 1 9.4849 -5.7952 -5.9982 43 1 11.1876 -5.8999 -5.4899 44 1 8.6342 -3.6509 -6.7607 45 1 9.7428 -2.2583 -6.7846 46 1 8.1292 -2.1357 -4.8822 47 1 9.8145 -2.2481 -4.3184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325013887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:52 Heat of formation + Delta-G solvation = -12.506080 kcal Electronic energy + Delta-G solvation = -29905.631055 eV Core-core repulsion = 25705.897627 eV Total energy + Delta-G solvation = -4199.733428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.72232 -39.78704 -38.90097 -36.28281 -35.91979 -34.69851 -33.49617 -32.26909 -31.59234 -30.70144 -29.34899 -29.21310 -27.37548 -25.30239 -24.10653 -23.59758 -23.06116 -22.07788 -21.30112 -19.96670 -18.68431 -18.27735 -17.59249 -17.29898 -16.87231 -15.79414 -15.74038 -15.60636 -15.35960 -14.91286 -14.60962 -14.35659 -14.23170 -13.95723 -13.82845 -13.67227 -13.37344 -13.16657 -12.92623 -12.71957 -12.53617 -12.41878 -12.19742 -12.02657 -11.79610 -11.49375 -11.44035 -11.28824 -11.14052 -10.95135 -10.93160 -10.84438 -10.38044 -10.09039 -10.06245 -9.84903 -9.75564 -9.56056 -9.16091 -8.87897 -8.52031 -7.14229 -5.90846 -3.21359 0.97403 2.05973 2.62067 2.95672 3.36503 3.42595 3.43292 3.44316 3.68993 3.89260 4.32543 4.48161 4.62691 4.76942 4.89978 5.09893 5.12717 5.14909 5.18945 5.20640 5.29272 5.36738 5.46780 5.49629 5.50738 5.60152 5.65867 5.69351 5.71951 5.81472 5.88432 5.94859 6.03221 6.06996 6.16837 6.25349 6.34778 6.50638 6.51901 6.67625 6.73593 6.95302 7.60940 7.66134 7.94442 8.01738 8.26240 8.58405 9.39352 9.89162 10.25697 11.30765 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010940 B = 0.003024 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.804246 B = 9257.791748 C =10716.985222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.390 5.390 4 O 0.075 5.925 5 C 0.192 3.808 6 C -0.011 4.011 7 C -0.140 4.140 8 C 0.516 3.484 9 O -0.556 6.556 10 N -0.696 5.696 11 C 0.120 3.880 12 C 0.188 3.812 13 N -0.712 5.712 14 C -0.236 4.236 15 H 0.070 0.930 16 C -0.004 4.004 17 N -0.930 5.930 18 Si 0.901 3.099 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.154 4.154 23 C 0.070 3.930 24 O -0.393 6.393 25 C 0.066 3.934 26 C -0.151 4.151 27 N -0.480 5.480 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.403 0.597 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 11.537 6.000 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.100 5.100 4 O 0.017 5.983 5 C -0.029 4.029 6 C -0.050 4.050 7 C -0.181 4.181 8 C 0.301 3.699 9 O -0.436 6.436 10 N -0.345 5.345 11 C -0.007 4.007 12 C 0.096 3.904 13 N -0.355 5.355 14 C -0.367 4.367 15 H 0.088 0.912 16 C -0.201 4.201 17 N -0.577 5.577 18 Si 0.732 3.268 19 H -0.217 1.217 20 H -0.219 1.219 21 H -0.207 1.207 22 C -0.195 4.195 23 C -0.007 4.007 24 O -0.312 6.312 25 C -0.011 4.011 26 C -0.189 4.189 27 N -0.214 5.214 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.238 0.762 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.437 11.690 6.735 13.499 hybrid contribution -1.070 -0.877 -0.158 1.393 sum -1.508 10.813 6.577 12.746 Atomic orbital electron populations 1.20138 0.82999 1.04563 1.04389 1.25939 1.00646 0.83578 1.00426 1.74626 0.89456 1.23976 1.21931 1.85287 1.22310 1.24939 1.65732 1.28916 0.97090 0.81994 0.94895 1.19984 0.87512 0.98960 0.98555 1.21608 0.97778 1.02010 0.96675 1.20117 0.85174 0.80401 0.84175 1.90679 1.64601 1.56979 1.31329 1.45677 1.27143 1.53513 1.08189 1.21795 0.84871 0.94989 0.99005 1.19847 0.89173 0.90893 0.90464 1.42475 1.34899 1.26820 1.31260 1.19045 1.05819 0.99223 1.12634 0.91215 1.24677 0.97799 0.99127 0.98491 1.69640 1.21231 1.40719 1.26142 0.86295 0.79008 0.83416 0.78083 1.21695 1.21861 1.20744 1.22487 0.97791 1.01493 0.97708 1.22448 1.00596 0.85524 0.92105 1.87805 1.36078 1.29520 1.77781 1.22460 0.89705 0.93218 0.95741 1.22359 1.01303 0.97890 0.97397 1.71965 0.99789 1.29274 1.20368 0.89244 0.88994 0.89616 0.87148 0.86232 0.87684 0.88437 0.76172 0.93012 0.91251 0.78070 0.93476 0.92561 0.90495 0.91479 0.90325 0.92329 0.90007 0.91251 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.51 36.00 0.38 -0.13 16 2 C 0.17 2.06 8.22 -156.37 -1.28 0.77 16 3 N -0.39 -5.13 12.16 30.90 0.38 -4.75 16 4 O 0.07 0.93 11.31 18.10 0.20 1.14 16 5 C 0.19 2.31 7.77 -13.06 -0.10 2.21 16 6 C -0.01 -0.12 5.13 -27.88 -0.14 -0.26 16 7 C -0.14 -1.61 5.68 -27.88 -0.16 -1.77 16 8 C 0.52 7.85 7.83 -10.98 -0.09 7.77 16 9 O -0.56 -10.07 15.98 5.56 0.09 -9.99 16 10 N -0.70 -10.84 5.16 -60.30 -0.31 -11.15 16 11 C 0.12 2.00 4.32 -4.04 -0.02 1.98 16 12 C 0.19 3.13 0.41 -131.63 -0.05 3.08 16 13 N -0.71 -14.58 3.77 -47.06 -0.18 -14.76 16 14 C -0.24 -5.68 8.70 -15.06 -0.13 -5.81 16 15 H 0.07 1.70 6.75 -52.49 -0.35 1.35 16 16 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 17 N -0.93 -25.36 13.07 55.49 0.73 -24.64 16 18 Si 0.90 21.31 29.55 -169.99 -5.02 16.28 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.15 -2.51 4.83 -26.58 -0.13 -2.64 16 23 C 0.07 1.15 6.68 37.21 0.25 1.39 16 24 O -0.39 -6.48 10.77 -35.23 -0.38 -6.85 16 25 C 0.07 0.97 6.67 37.20 0.25 1.22 16 26 C -0.15 -2.14 4.80 -26.59 -0.13 -2.27 16 27 N -0.48 -6.51 11.55 -9.87 -0.11 -6.62 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.11 1.04 8.10 -51.93 -0.42 0.62 16 32 H 0.12 1.39 8.10 -51.93 -0.42 0.97 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 35 H 0.40 6.04 7.31 -40.82 -0.30 5.74 16 36 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.07 1.35 7.54 -51.93 -0.39 0.96 16 38 H 0.38 8.50 6.72 -40.82 -0.27 8.23 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.35 7.12 -51.93 -0.37 0.98 16 42 H 0.07 1.27 7.75 -51.93 -0.40 0.87 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.06 0.96 7.09 -51.93 -0.37 0.60 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 0.91 7.21 -51.93 -0.37 0.54 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -30.34 385.10 -7.30 -37.64 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -7.04 Total: 12.58 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.45 Total: 5.32 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: 0.50 Total: -61.92 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.09 Total: -15.70 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.34 -7.30 -37.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325013887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.130 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds