Wall clock time and date at job start Tue Mar 31 2020 21:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29952 * 126.28571 * 2 1 4 4 O 1.21298 * 110.25156 * 180.02562 * 3 2 1 5 5 C 1.33645 * 109.81238 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.55354 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47114 * 269.97637 * 6 5 4 8 8 C 1.50704 * 109.47153 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99674 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99845 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99707 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47049 * 175.90708 * 11 10 8 13 13 N 1.46501 * 109.54439 * 305.05470 * 12 11 10 14 14 C 1.36931 * 120.00116 * 300.70057 * 13 12 11 15 15 H 1.08000 * 120.00093 * 354.06598 * 14 13 12 16 16 C 1.38805 * 120.00154 * 174.07911 * 14 13 12 17 17 N 1.31626 * 120.00033 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00378 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47107 * 89.99535 * 18 16 14 20 20 H 1.48502 * 109.47594 * 209.99798 * 18 16 14 21 21 H 1.48507 * 109.46744 * 329.99930 * 18 16 14 22 22 C 1.53181 * 109.54521 * 184.87999 * 12 11 10 23 23 C 1.53105 * 109.15890 * 183.23914 * 22 12 11 24 24 O 1.42904 * 109.48421 * 57.47707 * 23 22 12 25 25 C 1.42904 * 114.09788 * 298.88692 * 24 23 22 26 26 C 1.53086 * 109.41706 * 61.15959 * 25 24 23 27 27 N 1.31127 * 106.89535 * 0.02562 * 5 4 3 28 28 H 1.09003 * 109.47225 * 89.97653 * 1 2 3 29 29 H 1.09005 * 109.46798 * 209.97230 * 1 2 3 30 30 H 1.08999 * 109.47340 * 329.97224 * 1 2 3 31 31 H 1.09003 * 109.47156 * 29.97577 * 6 5 4 32 32 H 1.08998 * 109.47046 * 149.97633 * 6 5 4 33 33 H 1.08991 * 109.47432 * 300.00144 * 7 6 5 34 34 H 1.09008 * 109.47120 * 60.00100 * 7 6 5 35 35 H 0.96997 * 120.00328 * 0.02562 * 10 8 7 36 36 H 1.09008 * 109.47215 * 295.90293 * 11 10 8 37 37 H 1.08994 * 109.47415 * 55.90199 * 11 10 8 38 38 H 0.97002 * 119.99874 * 120.69279 * 13 12 11 39 39 H 0.97000 * 119.99612 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.52197 * 303.05833 * 22 12 11 41 41 H 1.09001 * 109.52210 * 63.24409 * 22 12 11 42 42 H 1.08998 * 109.40800 * 297.49256 * 23 22 12 43 43 H 1.09001 * 109.49031 * 177.50834 * 23 22 12 44 44 H 1.09001 * 109.47755 * 301.17825 * 25 24 23 45 45 H 1.09001 * 109.48926 * 181.14819 * 25 24 23 46 46 H 1.08998 * 109.52568 * 182.48835 * 26 25 24 47 47 H 1.09005 * 109.57242 * 62.32406 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7125 -0.0005 5 6 3.5299 -0.6211 -0.0003 6 6 4.7970 -1.4369 -0.0003 7 6 5.2254 -1.7137 -1.4428 8 6 6.4929 -2.5289 -1.4427 9 8 7.0029 -2.8567 -0.3923 10 7 7.0589 -2.8946 -2.6099 11 6 8.2907 -3.6877 -2.6098 12 6 8.6631 -4.0514 -4.0484 13 7 7.5333 -4.7271 -4.6913 14 6 7.0395 -5.8895 -4.1620 15 1 7.5410 -6.3593 -3.3289 16 6 5.8945 -6.4641 -4.6964 17 7 5.2831 -5.8914 -5.7117 18 14 5.2213 -8.0501 -3.9749 19 1 4.2559 -7.7309 -2.8926 20 1 4.5337 -8.8253 -5.0387 21 1 6.3390 -8.8550 -3.4198 22 6 9.8805 -4.9812 -4.0432 23 6 10.2949 -5.2745 -5.4876 24 8 10.5721 -4.0459 -6.1628 25 6 9.4552 -3.1578 -6.2402 26 6 9.0083 -2.7777 -4.8262 27 7 2.3030 -1.0840 -0.0002 28 1 -0.3634 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3634 0.8897 0.5143 31 1 5.5844 -0.8850 0.5131 32 1 4.6208 -2.3816 0.5141 33 1 4.4381 -2.2654 -1.9561 34 1 5.4016 -0.7688 -1.9571 35 1 6.6507 -2.6328 -3.4499 36 1 9.0969 -3.1067 -2.1617 37 1 8.1358 -4.5994 -2.0329 38 1 7.1349 -4.3510 -5.4918 39 1 4.4828 -6.2927 -6.0849 40 1 10.7055 -4.4981 -3.5198 41 1 9.6246 -5.9135 -3.5398 42 1 9.4849 -5.7952 -5.9982 43 1 11.1876 -5.8999 -5.4899 44 1 8.6342 -3.6509 -6.7607 45 1 9.7428 -2.2583 -6.7846 46 1 8.1292 -2.1357 -4.8822 47 1 9.8145 -2.2481 -4.3184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325013887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:52 Heat of formation + Delta-G solvation = -34.799989 kcal Electronic energy + Delta-G solvation = -29906.597792 eV Core-core repulsion = 25705.897627 eV Total energy + Delta-G solvation = -4200.700164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.66624 -41.09461 -40.17757 -37.35216 -37.16490 -35.68156 -35.05570 -33.83980 -32.57032 -31.95477 -30.92116 -30.11720 -28.60687 -26.43271 -25.85793 -24.57831 -24.35416 -23.33653 -22.25956 -21.18776 -20.09774 -19.28446 -19.06276 -18.55577 -18.03495 -17.17335 -17.00897 -16.80212 -16.61104 -16.23091 -15.89659 -15.76849 -15.42347 -15.26322 -15.12149 -14.50101 -14.45897 -14.37001 -14.17174 -13.69199 -13.65573 -13.50521 -13.46907 -13.21389 -13.13712 -12.87902 -12.82955 -12.66222 -12.36404 -12.24508 -12.21431 -12.08949 -12.07897 -11.69698 -11.46803 -11.10602 -11.05822 -10.93722 -10.75468 -10.30414 -9.84960 -8.95046 -7.89967 -5.15347 0.03344 1.12916 1.44998 1.49243 1.52823 1.66363 1.74963 2.39975 2.57518 2.70851 3.03061 3.09695 3.44165 3.65257 3.78577 3.87178 3.90941 4.00974 4.03779 4.15280 4.18479 4.26764 4.44279 4.49902 4.50359 4.55274 4.62761 4.65316 4.77345 4.80870 4.83766 4.86843 4.90923 4.91996 4.92723 5.07377 5.08008 5.14165 5.25341 5.31069 5.37249 5.60972 5.67714 6.32168 6.38897 6.69861 7.08761 7.35058 7.42190 8.11495 8.37758 9.32015 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010940 B = 0.003024 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.804246 B = 9257.791748 C =10716.985222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.162 3.838 3 N -0.408 5.408 4 O 0.073 5.927 5 C 0.199 3.801 6 C -0.004 4.004 7 C -0.129 4.129 8 C 0.514 3.486 9 O -0.586 6.586 10 N -0.697 5.697 11 C 0.127 3.873 12 C 0.185 3.815 13 N -0.712 5.712 14 C -0.210 4.210 15 H 0.065 0.935 16 C -0.058 4.058 17 N -0.958 5.958 18 Si 0.944 3.056 19 H -0.298 1.298 20 H -0.301 1.301 21 H -0.276 1.276 22 C -0.152 4.152 23 C 0.074 3.926 24 O -0.398 6.398 25 C 0.063 3.937 26 C -0.143 4.143 27 N -0.507 5.507 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.407 0.593 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.377 0.623 39 H 0.247 0.753 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.035 0.965 43 H 0.098 0.902 44 H 0.036 0.964 45 H 0.112 0.888 46 H 0.082 0.918 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 13.166 6.396 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 N -0.119 5.119 4 O 0.017 5.983 5 C -0.021 4.021 6 C -0.043 4.043 7 C -0.170 4.170 8 C 0.301 3.699 9 O -0.468 6.468 10 N -0.346 5.346 11 C 0.000 4.000 12 C 0.094 3.906 13 N -0.353 5.353 14 C -0.342 4.342 15 H 0.083 0.917 16 C -0.251 4.251 17 N -0.609 5.609 18 Si 0.776 3.224 19 H -0.226 1.226 20 H -0.228 1.228 21 H -0.202 1.202 22 C -0.192 4.192 23 C -0.002 4.002 24 O -0.317 6.317 25 C -0.014 4.014 26 C -0.181 4.181 27 N -0.242 5.242 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.145 0.855 35 H 0.243 0.757 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.211 0.789 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.116 0.884 44 H 0.055 0.945 45 H 0.130 0.870 46 H 0.101 0.899 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.389 13.331 7.147 15.131 hybrid contribution -1.218 -1.355 -0.243 1.838 sum -0.828 11.975 6.904 13.847 Atomic orbital electron populations 1.20351 0.80527 1.05772 1.05505 1.26640 1.02172 0.82971 0.99299 1.74616 0.89729 1.24499 1.23022 1.85265 1.22232 1.24917 1.65860 1.29020 0.97065 0.81977 0.94063 1.19958 0.87510 0.98654 0.98190 1.21541 0.95431 1.02587 0.97397 1.20663 0.85775 0.80024 0.83420 1.90667 1.65683 1.58158 1.32271 1.45703 1.26971 1.53278 1.08653 1.21638 0.85947 0.94156 0.98234 1.20063 0.87845 0.92045 0.90609 1.42499 1.35706 1.26059 1.31041 1.19182 1.04482 0.99570 1.10974 0.91684 1.25126 0.99025 1.01356 0.99612 1.69737 1.21679 1.41777 1.27689 0.85589 0.78308 0.81609 0.76930 1.22594 1.22784 1.20180 1.22451 0.98246 1.00767 0.97742 1.22374 1.00408 0.85794 0.91652 1.87807 1.36645 1.29442 1.77773 1.22592 0.88781 0.93718 0.96259 1.22315 1.02571 0.96547 0.96627 1.71990 1.00607 1.30190 1.21432 0.88047 0.88164 0.88015 0.85435 0.87154 0.88316 0.85487 0.75700 0.91311 0.94449 0.78910 0.94430 0.90240 0.92217 0.94677 0.88353 0.94546 0.87045 0.89932 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.51 71.23 0.75 -0.19 16 2 C 0.16 3.80 8.22 138.46 1.14 4.94 16 3 N -0.41 -10.25 12.16 -60.31 -0.73 -10.98 16 4 O 0.07 1.73 11.31 74.82 0.85 2.57 16 5 C 0.20 4.57 7.77 88.38 0.69 5.26 16 6 C 0.00 -0.08 5.13 29.85 0.15 0.07 16 7 C -0.13 -2.76 5.68 29.85 0.17 -2.59 16 8 C 0.51 14.97 7.83 87.66 0.69 15.66 16 9 O -0.59 -20.69 15.98 -3.03 -0.05 -20.73 16 10 N -0.70 -20.72 5.16 -463.07 -2.39 -23.11 16 11 C 0.13 4.06 4.32 86.38 0.37 4.43 16 12 C 0.19 5.88 0.41 3.72 0.00 5.88 16 13 N -0.71 -28.95 3.77 -302.81 -1.14 -30.09 16 14 C -0.21 -10.13 8.70 84.03 0.73 -9.40 16 15 H 0.07 3.19 6.75 -2.91 -0.02 3.17 16 16 C -0.06 -3.05 5.50 84.86 0.47 -2.58 16 17 N -0.96 -53.11 13.07 21.65 0.28 -52.82 16 18 Si 0.94 44.44 29.55 68.60 2.03 46.47 16 19 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 20 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 C -0.15 -4.72 4.83 30.69 0.15 -4.57 16 23 C 0.07 2.35 6.68 72.02 0.48 2.83 16 24 O -0.40 -12.25 10.77 -148.98 -1.60 -13.85 16 25 C 0.06 1.72 6.67 72.01 0.48 2.20 16 26 C -0.14 -3.63 4.80 30.68 0.15 -3.49 16 27 N -0.51 -13.33 11.55 -303.19 -3.50 -16.83 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.13 2.17 8.10 -2.39 -0.02 2.15 16 32 H 0.11 2.50 8.10 -2.39 -0.02 2.48 16 33 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.41 11.54 7.31 -92.71 -0.68 10.86 16 36 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.04 1.44 7.54 -2.39 -0.02 1.42 16 38 H 0.38 16.67 6.72 -92.71 -0.62 16.04 16 39 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.06 2.06 7.12 -2.39 -0.02 2.04 16 42 H 0.03 1.33 7.75 -2.39 -0.02 1.31 16 43 H 0.10 2.68 8.14 -2.39 -0.02 2.67 16 44 H 0.04 1.16 7.09 -2.39 -0.02 1.15 16 45 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.08 1.92 7.21 -2.39 -0.02 1.90 16 47 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -65.52 385.10 -0.14 -65.66 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: -0.29 Total: 35.26 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 6.41 Total: 18.46 kcal Atomic # 7 Polarization: -126.35 SS G_CDS: -7.48 Total: -133.83 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.81 Total: -32.01 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -65.52 -0.14 -65.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325013887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.859 kcal (2) G-P(sol) polarization free energy of solvation -65.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds