Wall clock time and date at job start Tue Mar 31 2020 21:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30525 * 119.70562 * 2 1 4 4 N 1.28264 * 122.98344 * 180.02562 * 3 2 1 5 5 C 1.46508 * 119.02914 * 179.97438 * 4 3 2 6 6 C 1.34683 * 121.94279 * 0.02562 * 4 3 2 7 7 O 1.21894 * 120.47023 * 179.97438 * 6 4 3 8 8 C 1.42326 * 119.05866 * 359.97438 * 6 4 3 9 9 C 1.47414 * 121.29658 * 179.97438 * 8 6 4 10 10 O 1.21607 * 119.99888 * 82.33676 * 9 8 6 11 11 N 1.34774 * 120.00360 * 262.06152 * 9 8 6 12 12 C 1.46505 * 119.99622 * 355.47310 * 11 9 8 13 13 C 1.53000 * 109.47227 * 94.03949 * 12 11 9 14 14 O 1.42893 * 109.47417 * 64.99621 * 13 12 11 15 15 C 1.46499 * 120.00280 * 175.47041 * 11 9 8 16 16 C 1.52998 * 109.47120 * 89.99875 * 15 11 9 17 17 N 1.46499 * 109.47120 * 180.02562 * 16 15 11 18 18 C 1.36936 * 120.00040 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00389 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00099 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00103 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99928 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46914 * 89.99754 * 22 20 18 24 24 H 1.48504 * 109.47235 * 209.99722 * 22 20 18 25 25 H 1.48499 * 109.47231 * 329.99783 * 22 20 18 26 26 C 1.39315 * 117.40580 * 0.25593 * 8 6 4 27 27 C 1.50694 * 120.99288 * 179.72519 * 26 8 6 28 28 H 1.09010 * 109.46838 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47522 * 119.99548 * 1 2 3 30 30 H 1.09000 * 109.47424 * 240.00124 * 1 2 3 31 31 H 1.08994 * 109.47303 * 270.02189 * 5 4 3 32 32 H 1.09003 * 109.46846 * 30.02902 * 5 4 3 33 33 H 1.09001 * 109.46672 * 150.01839 * 5 4 3 34 34 H 1.09003 * 109.46807 * 214.03431 * 12 11 9 35 35 H 1.08997 * 109.47221 * 334.03174 * 12 11 9 36 36 H 1.08994 * 109.46730 * 184.99858 * 13 12 11 37 37 H 1.08998 * 109.46409 * 304.99695 * 13 12 11 38 38 H 0.96697 * 113.99924 * 180.02562 * 14 13 12 39 39 H 1.08997 * 109.47388 * 210.00319 * 15 11 9 40 40 H 1.09004 * 109.47097 * 329.99926 * 15 11 9 41 41 H 1.08997 * 109.47352 * 300.00466 * 16 15 11 42 42 H 1.09004 * 109.47093 * 60.00049 * 16 15 11 43 43 H 0.96995 * 120.00078 * 0.02562 * 17 16 15 44 44 H 0.97001 * 119.99943 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.46919 * 85.16280 * 27 26 8 46 46 H 1.09003 * 109.47149 * 205.15826 * 27 26 8 47 47 H 1.08999 * 109.47048 * 325.15990 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1538 1.1337 0.0000 4 7 3.4343 1.2071 -0.0005 5 6 4.0708 2.5266 -0.0010 6 6 4.2111 0.1068 -0.0015 7 8 5.4258 0.2077 -0.0024 8 6 3.5934 -1.1755 -0.0016 9 6 4.3959 -2.4120 -0.0033 10 8 4.8459 -2.8462 1.0397 11 7 4.6262 -3.0644 -1.1599 12 6 3.9979 -2.6013 -2.3997 13 6 4.9556 -1.6636 -3.1375 14 8 6.1131 -2.3931 -3.5499 15 6 5.5048 -4.2365 -1.1774 16 6 4.6767 -5.4985 -0.9277 17 7 5.5554 -6.6706 -0.9446 18 6 5.0338 -7.9203 -0.7418 19 1 3.9745 -8.0421 -0.5698 20 6 5.8664 -9.0310 -0.7583 21 7 5.3649 -10.2324 -0.5639 22 14 7.6983 -8.8206 -1.0566 23 1 8.3924 -8.6289 0.2422 24 1 8.2327 -10.0319 -1.7294 25 1 7.9263 -7.6338 -1.9195 26 6 2.2008 -1.2164 -0.0060 27 6 1.4632 -2.5305 -0.0126 28 1 -0.3633 1.0278 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 -0.3634 -0.5138 0.8900 31 1 4.2280 2.8538 -1.0287 32 1 3.4275 3.2405 0.5134 33 1 5.0306 2.4672 0.5122 34 1 3.7687 -3.4584 -3.0330 35 1 3.0772 -2.0679 -2.1632 36 1 4.4559 -1.2497 -4.0133 37 1 5.2546 -0.8532 -2.4727 38 1 6.7653 -1.8601 -4.0247 39 1 5.9942 -4.3094 -2.1487 40 1 6.2593 -4.1367 -0.3971 41 1 4.1873 -5.4257 0.0436 42 1 3.9222 -5.5983 -1.7080 43 1 6.5068 -6.5613 -1.0987 44 1 5.9468 -11.0084 -0.5751 45 1 1.3578 -2.8930 1.0099 46 1 0.4756 -2.3906 -0.4521 47 1 2.0227 -3.2582 -0.6004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326069699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:57 Heat of formation + Delta-G solvation = -28.205387 kcal Electronic energy + Delta-G solvation = -30827.392574 eV Core-core repulsion = 26626.978373 eV Total energy + Delta-G solvation = -4200.414201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.50802 -39.92942 -38.33569 -37.26900 -36.30102 -35.64062 -34.40682 -32.83188 -31.53488 -30.96356 -29.72209 -28.57770 -27.91783 -26.66515 -25.04303 -23.39321 -22.97755 -22.60286 -21.37654 -19.83317 -18.72247 -18.10594 -17.52554 -17.48496 -17.15212 -16.75845 -16.27288 -16.04789 -15.16663 -14.63536 -14.54317 -14.45151 -14.25663 -13.85518 -13.79964 -13.74958 -13.64018 -13.37651 -13.31144 -13.14142 -13.00379 -12.95357 -12.57601 -12.50294 -12.42526 -12.39835 -11.75699 -11.54307 -11.45147 -11.04678 -11.01048 -10.65726 -10.42957 -10.24317 -10.15701 -10.09312 -9.76843 -9.53664 -8.82299 -8.75675 -8.57472 -7.16861 -5.70412 -3.05753 -0.08160 1.19191 1.73363 2.53517 2.77519 3.01261 3.45590 3.49685 3.52349 3.64174 3.95828 4.02488 4.09184 4.28421 4.64336 4.66811 4.76519 4.79313 4.81424 4.95130 5.00094 5.05324 5.07855 5.08853 5.13779 5.21258 5.23930 5.31601 5.46202 5.48784 5.49656 5.56389 5.62804 5.70463 5.77173 5.84361 5.86136 6.14942 6.46845 6.69583 6.87945 7.24699 7.35369 7.49609 7.73653 8.04296 8.13531 8.48230 9.27219 9.99882 10.19764 11.47977 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.003116 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.627171 B = 8982.517081 C = 9662.091450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.063 3.937 3 N -0.215 5.215 4 N -0.345 5.345 5 C 0.081 3.919 6 C 0.497 3.503 7 O -0.516 6.516 8 C -0.202 4.202 9 C 0.583 3.417 10 O -0.510 6.510 11 N -0.587 5.587 12 C 0.106 3.894 13 C 0.059 3.941 14 O -0.560 6.560 15 C 0.108 3.892 16 C 0.147 3.853 17 N -0.753 5.753 18 C -0.240 4.240 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.936 5.936 22 Si 0.884 3.116 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.276 1.276 26 C 0.002 3.998 27 C -0.136 4.136 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.377 0.623 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.030 0.970 42 H 0.025 0.975 43 H 0.362 0.638 44 H 0.259 0.741 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.521 29.976 -4.830 32.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 N -0.039 5.039 4 N -0.166 5.166 5 C -0.058 4.058 6 C 0.294 3.706 7 O -0.393 6.393 8 C -0.218 4.218 9 C 0.368 3.632 10 O -0.384 6.384 11 N -0.320 5.320 12 C -0.018 4.018 13 C -0.021 4.021 14 O -0.365 6.365 15 C -0.014 4.014 16 C 0.019 3.981 17 N -0.399 5.399 18 C -0.370 4.370 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.584 5.584 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.202 1.202 26 C -0.004 4.004 27 C -0.192 4.192 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.224 0.776 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.117 0.883 46 H 0.109 0.891 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.068 30.075 -3.930 32.287 hybrid contribution 1.886 -0.107 -0.501 1.955 sum -9.181 29.968 -4.432 31.655 Atomic orbital electron populations 1.20599 0.85732 1.04545 1.03740 1.21665 0.98068 0.86497 1.04538 1.70646 0.95080 1.28827 1.09395 1.46560 1.02011 1.09857 1.58139 1.22173 0.99408 0.79832 1.04434 1.17579 0.88089 0.84467 0.80423 1.90986 1.11946 1.85761 1.50565 1.21514 0.94077 0.94815 1.11367 1.17308 0.79752 0.82000 0.84116 1.90867 1.49875 1.66571 1.31042 1.47652 1.48095 1.29642 1.06581 1.21739 0.94520 0.99558 0.85963 1.22645 0.87699 0.94337 0.97385 1.86549 1.31750 1.39886 1.78339 1.21823 0.92499 0.83213 1.03817 1.20892 0.93171 0.85349 0.98690 1.42549 1.05886 1.02948 1.88479 1.19024 0.95082 0.81870 1.41023 0.89251 1.24655 0.97546 0.95097 1.01885 1.69706 1.34441 0.97436 1.56805 0.86535 0.86995 0.76859 0.78143 1.21002 1.21746 1.20186 1.21525 0.92139 0.97584 0.89174 1.21157 1.00897 0.92141 1.05038 0.89928 0.89585 0.89588 0.90038 0.88540 0.88171 0.88451 0.89543 0.92961 0.93609 0.77565 0.88943 0.90086 0.95180 0.95688 0.80591 0.93100 0.88324 0.89100 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.33 8.96 36.00 0.32 -0.01 16 2 C 0.06 0.48 6.87 -82.47 -0.57 -0.08 16 3 N -0.21 -1.90 10.74 33.66 0.36 -1.54 16 4 N -0.35 -3.55 3.62 -69.82 -0.25 -3.81 16 5 C 0.08 0.55 10.58 59.85 0.63 1.18 16 6 C 0.50 6.87 7.28 -14.73 -0.11 6.76 16 7 O -0.52 -8.76 16.07 5.01 0.08 -8.68 16 8 C -0.20 -2.74 4.31 -104.19 -0.45 -3.19 16 9 C 0.58 9.91 5.60 -12.53 -0.07 9.84 16 10 O -0.51 -10.94 16.73 5.27 0.09 -10.85 16 11 N -0.59 -9.08 2.30 -174.96 -0.40 -9.48 16 12 C 0.11 1.21 5.21 -4.04 -0.02 1.19 16 13 C 0.06 0.62 7.39 37.16 0.27 0.89 16 14 O -0.56 -6.67 12.12 -35.23 -0.43 -7.10 16 15 C 0.11 1.99 5.30 -4.04 -0.02 1.97 16 16 C 0.15 3.12 6.58 -4.04 -0.03 3.09 16 17 N -0.75 -19.22 5.41 -59.91 -0.32 -19.54 16 18 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16 19 H 0.09 2.81 8.06 -52.48 -0.42 2.38 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 21 N -0.94 -30.23 13.97 55.49 0.78 -29.46 16 22 Si 0.88 23.11 27.74 -169.99 -4.71 18.39 16 23 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 25 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 26 C 0.00 0.02 5.00 -103.55 -0.52 -0.49 16 27 C -0.14 -1.07 9.07 36.00 0.33 -0.74 16 28 H 0.08 0.26 8.11 -51.92 -0.42 -0.16 16 29 H 0.09 0.18 7.56 -51.93 -0.39 -0.21 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.75 7.36 -51.93 -0.38 0.37 16 34 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 35 H 0.09 0.78 5.40 -51.93 -0.28 0.50 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.55 7.81 -51.93 -0.41 0.15 16 38 H 0.38 2.88 9.12 45.56 0.42 3.30 16 39 H 0.09 1.65 6.76 -51.93 -0.35 1.30 16 40 H 0.08 1.65 7.49 -51.93 -0.39 1.26 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.36 9.04 5.53 -40.82 -0.23 8.82 16 44 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.09 0.40 6.63 -51.93 -0.34 0.05 16 47 H 0.09 0.83 6.40 -51.93 -0.33 0.50 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -41.11 387.16 -5.54 -46.65 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.08 Total: 6.43 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: -0.48 Total: 13.15 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: 0.16 Total: -63.83 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.26 Total: -26.63 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.71 Total: 18.39 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -41.11 -5.54 -46.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326069699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.441 kcal (2) G-P(sol) polarization free energy of solvation -41.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds