Wall clock time and date at job start Tue Mar 31 2020 21:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30525 * 119.70562 * 2 1 4 4 N 1.28264 * 122.98344 * 180.02562 * 3 2 1 5 5 C 1.46508 * 119.02914 * 179.97438 * 4 3 2 6 6 C 1.34683 * 121.94279 * 0.02562 * 4 3 2 7 7 O 1.21894 * 120.47023 * 179.97438 * 6 4 3 8 8 C 1.42326 * 119.05866 * 359.97438 * 6 4 3 9 9 C 1.47414 * 121.29658 * 179.97438 * 8 6 4 10 10 O 1.21607 * 119.99888 * 82.33676 * 9 8 6 11 11 N 1.34774 * 120.00360 * 262.06152 * 9 8 6 12 12 C 1.46505 * 119.99622 * 355.47310 * 11 9 8 13 13 C 1.53000 * 109.47227 * 94.03949 * 12 11 9 14 14 O 1.42893 * 109.47417 * 64.99621 * 13 12 11 15 15 C 1.46499 * 120.00280 * 175.47041 * 11 9 8 16 16 C 1.52998 * 109.47120 * 89.99875 * 15 11 9 17 17 N 1.46499 * 109.47120 * 180.02562 * 16 15 11 18 18 C 1.36936 * 120.00040 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00389 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00099 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00103 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99928 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46914 * 89.99754 * 22 20 18 24 24 H 1.48504 * 109.47235 * 209.99722 * 22 20 18 25 25 H 1.48499 * 109.47231 * 329.99783 * 22 20 18 26 26 C 1.39315 * 117.40580 * 0.25593 * 8 6 4 27 27 C 1.50694 * 120.99288 * 179.72519 * 26 8 6 28 28 H 1.09010 * 109.46838 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47522 * 119.99548 * 1 2 3 30 30 H 1.09000 * 109.47424 * 240.00124 * 1 2 3 31 31 H 1.08994 * 109.47303 * 270.02189 * 5 4 3 32 32 H 1.09003 * 109.46846 * 30.02902 * 5 4 3 33 33 H 1.09001 * 109.46672 * 150.01839 * 5 4 3 34 34 H 1.09003 * 109.46807 * 214.03431 * 12 11 9 35 35 H 1.08997 * 109.47221 * 334.03174 * 12 11 9 36 36 H 1.08994 * 109.46730 * 184.99858 * 13 12 11 37 37 H 1.08998 * 109.46409 * 304.99695 * 13 12 11 38 38 H 0.96697 * 113.99924 * 180.02562 * 14 13 12 39 39 H 1.08997 * 109.47388 * 210.00319 * 15 11 9 40 40 H 1.09004 * 109.47097 * 329.99926 * 15 11 9 41 41 H 1.08997 * 109.47352 * 300.00466 * 16 15 11 42 42 H 1.09004 * 109.47093 * 60.00049 * 16 15 11 43 43 H 0.96995 * 120.00078 * 0.02562 * 17 16 15 44 44 H 0.97001 * 119.99943 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.46919 * 85.16280 * 27 26 8 46 46 H 1.09003 * 109.47149 * 205.15826 * 27 26 8 47 47 H 1.08999 * 109.47048 * 325.15990 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1538 1.1337 0.0000 4 7 3.4343 1.2071 -0.0005 5 6 4.0708 2.5266 -0.0010 6 6 4.2111 0.1068 -0.0015 7 8 5.4258 0.2077 -0.0024 8 6 3.5934 -1.1755 -0.0016 9 6 4.3959 -2.4120 -0.0033 10 8 4.8459 -2.8462 1.0397 11 7 4.6262 -3.0644 -1.1599 12 6 3.9979 -2.6013 -2.3997 13 6 4.9556 -1.6636 -3.1375 14 8 6.1131 -2.3931 -3.5499 15 6 5.5048 -4.2365 -1.1774 16 6 4.6767 -5.4985 -0.9277 17 7 5.5554 -6.6706 -0.9446 18 6 5.0338 -7.9203 -0.7418 19 1 3.9745 -8.0421 -0.5698 20 6 5.8664 -9.0310 -0.7583 21 7 5.3649 -10.2324 -0.5639 22 14 7.6983 -8.8206 -1.0566 23 1 8.3924 -8.6289 0.2422 24 1 8.2327 -10.0319 -1.7294 25 1 7.9263 -7.6338 -1.9195 26 6 2.2008 -1.2164 -0.0060 27 6 1.4632 -2.5305 -0.0126 28 1 -0.3633 1.0278 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 -0.3634 -0.5138 0.8900 31 1 4.2280 2.8538 -1.0287 32 1 3.4275 3.2405 0.5134 33 1 5.0306 2.4672 0.5122 34 1 3.7687 -3.4584 -3.0330 35 1 3.0772 -2.0679 -2.1632 36 1 4.4559 -1.2497 -4.0133 37 1 5.2546 -0.8532 -2.4727 38 1 6.7653 -1.8601 -4.0247 39 1 5.9942 -4.3094 -2.1487 40 1 6.2593 -4.1367 -0.3971 41 1 4.1873 -5.4257 0.0436 42 1 3.9222 -5.5983 -1.7080 43 1 6.5068 -6.5613 -1.0987 44 1 5.9468 -11.0084 -0.5751 45 1 1.3578 -2.8930 1.0099 46 1 0.4756 -2.3906 -0.4521 47 1 2.0227 -3.2582 -0.6004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326069699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:56 Heat of formation + Delta-G solvation = -62.629419 kcal Electronic energy + Delta-G solvation = -30828.885312 eV Core-core repulsion = 26626.978373 eV Total energy + Delta-G solvation = -4201.906939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.35070 -41.14560 -39.25793 -38.30476 -37.34896 -37.01771 -36.00142 -33.91376 -33.37734 -31.65963 -31.05665 -29.47218 -29.07831 -27.42539 -26.21798 -24.88532 -24.04407 -23.39512 -23.19698 -21.01507 -19.77262 -19.55173 -18.99326 -18.41747 -18.01993 -17.71357 -17.53211 -16.96884 -16.50127 -16.38623 -15.75876 -15.47294 -15.40141 -15.13827 -14.91410 -14.88773 -14.73825 -14.62267 -14.25880 -14.09079 -13.90066 -13.74920 -13.51749 -13.45362 -13.43598 -13.07143 -12.90089 -12.87840 -12.78669 -12.63415 -12.37866 -12.33032 -12.11339 -11.84383 -11.58898 -11.08846 -11.04269 -10.95934 -10.83367 -9.90566 -9.60224 -9.37438 -8.05971 -5.40932 -0.93356 0.38529 0.88757 1.36434 1.40182 1.40433 1.46823 1.68967 2.07480 2.46115 2.83917 3.07148 3.24445 3.25580 3.28091 3.59362 3.69870 3.84013 3.92412 4.10840 4.14730 4.19918 4.25011 4.30471 4.31358 4.33233 4.42527 4.43972 4.53529 4.57530 4.64197 4.69726 4.75354 4.80872 4.93687 4.97179 4.99835 5.04416 5.09268 5.34193 5.43023 5.70230 6.13711 6.17115 6.35070 6.80915 6.85993 6.96397 7.02005 7.76015 7.96261 9.15128 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.003116 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.627171 B = 8982.517081 C = 9662.091450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.069 3.931 3 N -0.210 5.210 4 N -0.341 5.341 5 C 0.075 3.925 6 C 0.490 3.510 7 O -0.567 6.567 8 C -0.244 4.244 9 C 0.583 3.417 10 O -0.571 6.571 11 N -0.583 5.583 12 C 0.099 3.901 13 C 0.063 3.937 14 O -0.584 6.584 15 C 0.124 3.876 16 C 0.154 3.846 17 N -0.756 5.756 18 C -0.237 4.237 19 H 0.059 0.941 20 C -0.059 4.059 21 N -0.980 5.980 22 Si 0.952 3.048 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.251 1.251 26 C 0.034 3.966 27 C -0.140 4.140 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.027 0.973 38 H 0.394 0.606 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.010 0.990 42 H 0.041 0.959 43 H 0.366 0.634 44 H 0.260 0.740 45 H 0.097 0.903 46 H 0.137 0.863 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.482 32.464 -6.584 35.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 N -0.035 5.035 4 N -0.160 5.160 5 C -0.064 4.064 6 C 0.289 3.711 7 O -0.448 6.448 8 C -0.259 4.259 9 C 0.371 3.629 10 O -0.450 6.450 11 N -0.314 5.314 12 C -0.023 4.023 13 C -0.016 4.016 14 O -0.392 6.392 15 C 0.001 3.999 16 C 0.027 3.973 17 N -0.402 5.402 18 C -0.367 4.367 19 H 0.077 0.923 20 C -0.251 4.251 21 N -0.630 5.630 22 Si 0.779 3.221 23 H -0.209 1.209 24 H -0.214 1.214 25 H -0.176 1.176 26 C 0.026 3.974 27 C -0.196 4.196 28 H 0.112 0.888 29 H 0.131 0.869 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.142 0.858 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.045 0.955 38 H 0.244 0.756 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.028 0.972 42 H 0.059 0.941 43 H 0.199 0.801 44 H 0.069 0.931 45 H 0.116 0.884 46 H 0.155 0.845 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.079 32.658 -5.740 35.645 hybrid contribution 2.256 -0.820 0.058 2.401 sum -10.823 31.838 -5.682 34.104 Atomic orbital electron populations 1.20863 0.82130 1.06047 1.05693 1.22398 0.99958 0.85154 1.02493 1.70823 0.94047 1.29159 1.09429 1.46736 1.02377 1.10000 1.56843 1.22449 0.99309 0.78715 1.05924 1.17673 0.87732 0.85376 0.80343 1.90944 1.13804 1.86489 1.53589 1.21175 0.95295 0.93222 1.16201 1.17838 0.79071 0.82656 0.83376 1.90813 1.52525 1.68445 1.33185 1.47693 1.47356 1.28411 1.07930 1.22094 0.95589 1.00368 0.84238 1.22634 0.87425 0.93290 0.98247 1.86484 1.32760 1.41194 1.78794 1.21439 0.92003 0.83226 1.03227 1.20923 0.93204 0.85226 0.97982 1.42547 1.06598 1.02751 1.88320 1.18995 0.93946 0.83705 1.40101 0.92255 1.25472 1.02689 0.94666 1.02249 1.69870 1.36357 0.98398 1.58392 0.85446 0.80557 0.77742 0.78330 1.20924 1.21407 1.17561 1.21861 0.90605 0.99348 0.85545 1.21334 1.02710 0.90568 1.05036 0.88802 0.86945 0.88047 0.88171 0.85817 0.89508 0.87708 0.87017 0.89274 0.95475 0.75608 0.87901 0.92665 0.97155 0.94126 0.80123 0.93125 0.88434 0.84494 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.22 8.96 71.23 0.64 0.42 16 2 C 0.07 0.83 6.87 43.19 0.30 1.13 16 3 N -0.21 -3.12 10.74 -47.43 -0.51 -3.63 16 4 N -0.34 -6.58 3.62 -492.99 -1.78 -8.37 16 5 C 0.07 0.91 10.58 127.77 1.35 2.27 16 6 C 0.49 13.71 7.28 85.27 0.62 14.33 16 7 O -0.57 -20.31 16.07 -4.97 -0.08 -20.39 16 8 C -0.24 -6.60 4.31 -19.58 -0.08 -6.69 16 9 C 0.58 20.58 5.60 86.66 0.48 21.07 16 10 O -0.57 -26.15 16.73 -4.05 -0.07 -26.22 16 11 N -0.58 -18.24 2.30 -825.70 -1.90 -20.14 16 12 C 0.10 2.11 5.21 86.38 0.45 2.56 16 13 C 0.06 1.23 7.39 71.98 0.53 1.76 16 14 O -0.58 -13.19 12.12 -148.98 -1.81 -14.99 16 15 C 0.12 4.64 5.30 86.38 0.46 5.10 16 16 C 0.15 6.62 6.58 86.38 0.57 7.19 16 17 N -0.76 -38.82 5.41 -343.45 -1.86 -40.67 16 18 C -0.24 -14.30 10.47 84.03 0.88 -13.42 16 19 H 0.06 3.87 8.06 -2.91 -0.02 3.84 16 20 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 21 N -0.98 -64.55 13.97 21.65 0.30 -64.25 16 22 Si 0.95 47.85 27.74 68.60 1.90 49.75 16 23 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.25 -11.49 6.52 99.48 0.65 -10.84 16 26 C 0.03 0.58 5.00 -19.17 -0.10 0.49 16 27 C -0.14 -1.85 9.07 71.23 0.65 -1.20 16 28 H 0.09 0.12 8.11 -2.38 -0.02 0.10 16 29 H 0.11 -0.22 7.56 -2.38 -0.02 -0.24 16 30 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.12 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.09 1.33 7.36 -2.39 -0.02 1.31 16 34 H 0.10 2.10 8.10 -2.39 -0.02 2.08 16 35 H 0.11 1.76 5.40 -2.39 -0.01 1.75 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.03 0.65 7.81 -2.39 -0.02 0.63 16 38 H 0.39 5.54 9.12 -74.06 -0.68 4.86 16 39 H 0.10 3.63 6.76 -2.39 -0.02 3.61 16 40 H 0.05 2.35 7.49 -2.39 -0.02 2.33 16 41 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.37 18.06 5.53 -92.71 -0.51 17.55 16 44 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 45 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.14 0.51 6.63 -2.39 -0.02 0.50 16 47 H 0.07 1.22 6.40 -2.39 -0.02 1.20 16 Total: -1.00 -94.89 387.16 1.19 -93.71 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -0.23 Total: 23.37 kcal Atomic # 6 Polarization: 24.63 SS G_CDS: 7.21 Total: 31.84 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -5.75 Total: -137.06 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: -1.95 Total: -61.61 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.90 Total: 49.75 kcal Total: -94.89 1.19 -93.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326069699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.079 kcal (2) G-P(sol) polarization free energy of solvation -94.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds