Wall clock time and date at job start Tue Mar 31 2020 21:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30617 * 125.42518 * 2 1 4 4 C 1.33687 * 108.99283 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.27158 * 180.02562 * 4 3 2 6 6 C 1.36340 * 107.45658 * 0.02562 * 4 3 2 7 7 C 1.46725 * 126.64313 * 179.97438 * 6 4 3 8 8 O 1.21683 * 119.99964 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99603 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99669 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47051 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46505 * 64.99900 * 11 10 9 13 13 C 1.52997 * 109.47127 * 185.00029 * 11 10 9 14 14 N 1.46894 * 109.47224 * 305.00575 * 11 10 9 15 15 C 1.46902 * 110.99790 * 298.94884 * 14 11 10 16 16 C 1.46896 * 111.00342 * 175.00014 * 14 11 10 17 17 C 1.50695 * 109.47619 * 189.99958 * 16 14 11 18 18 O 1.21286 * 119.99843 * 359.97438 * 17 16 14 19 19 N 1.34776 * 120.00467 * 180.02562 * 17 16 14 20 20 C 1.37089 * 120.00385 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00257 * 359.97438 * 20 19 17 22 22 C 1.38957 * 120.00040 * 179.97438 * 20 19 17 23 23 N 1.31405 * 119.99968 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99986 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47186 * 60.00291 * 24 22 20 26 26 H 1.48500 * 109.47234 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47148 * 300.00649 * 24 22 20 28 28 O 1.33662 * 125.42162 * 180.28620 * 2 1 3 29 29 H 1.09000 * 109.47405 * 90.02209 * 1 2 3 30 30 H 1.08996 * 109.47271 * 210.02729 * 1 2 3 31 31 H 1.09007 * 109.46847 * 330.02487 * 1 2 3 32 32 H 1.09000 * 109.47084 * 269.97779 * 5 4 3 33 33 H 1.09001 * 109.47035 * 29.97791 * 5 4 3 34 34 H 1.08997 * 109.47140 * 149.97659 * 5 4 3 35 35 H 0.96996 * 120.00429 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.46773 * 60.00404 * 10 9 7 37 37 H 1.09000 * 109.47434 * 300.00313 * 10 9 7 38 38 H 1.09002 * 109.47153 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.46832 * 60.00321 * 13 11 10 40 40 H 1.09004 * 109.47261 * 300.00303 * 13 11 10 41 41 H 1.09003 * 109.46808 * 60.00632 * 15 14 11 42 42 H 1.09004 * 109.47176 * 180.02562 * 15 14 11 43 43 H 1.08994 * 109.47263 * 300.00333 * 15 14 11 44 44 H 1.09006 * 109.46837 * 310.00141 * 16 14 11 45 45 H 1.09003 * 109.47200 * 69.99229 * 16 14 11 46 46 H 0.97011 * 119.99567 * 359.97438 * 19 17 16 47 47 H 0.96997 * 120.00137 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5464 0.6862 0.0006 5 6 4.7453 1.5994 0.0013 6 6 3.5708 -0.6770 0.0003 7 6 4.7635 -1.5315 0.0003 8 8 5.8718 -1.0292 0.0009 9 7 4.6315 -2.8728 0.0006 10 6 5.8224 -3.7260 -0.0001 11 6 5.3968 -5.1957 0.0011 12 1 4.8777 -5.4243 -0.9297 13 6 6.6354 -6.0852 0.1261 14 7 4.4985 -5.4445 1.1364 15 6 5.1738 -5.1701 2.4119 16 6 3.9748 -6.8165 1.1026 17 6 2.8790 -6.9613 2.1268 18 8 2.5653 -6.0149 2.8173 19 7 2.2480 -8.1429 2.2762 20 6 1.2514 -8.2748 3.2083 21 1 0.9721 -7.4320 3.8232 22 6 0.6005 -9.4928 3.3619 23 7 0.9407 -10.5184 2.6141 24 14 -0.7569 -9.6728 4.6325 25 1 -1.8516 -8.7173 4.3260 26 1 -1.2860 -11.0599 4.5985 27 1 -0.2119 -9.3842 5.9834 28 8 2.2817 -1.0892 -0.0054 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5135 32 1 5.0350 1.8194 -1.0262 33 1 4.4946 2.5276 0.5148 34 1 5.5732 1.1116 0.5158 35 1 3.7480 -3.2732 0.0005 36 1 6.4175 -3.5198 0.8895 37 1 6.4165 -3.5201 -0.8905 38 1 6.3322 -7.1322 0.1265 39 1 7.1544 -5.8565 1.0569 40 1 7.3019 -5.9005 -0.7164 41 1 5.4901 -4.1273 2.4385 42 1 4.4865 -5.3628 3.2357 43 1 6.0458 -5.8169 2.5078 44 1 3.5756 -7.0286 0.1107 45 1 4.7782 -7.5177 1.3284 46 1 2.4991 -8.9000 1.7241 47 1 0.4866 -11.3688 2.7216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329408214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:22 Heat of formation + Delta-G solvation = -43.379320 kcal Electronic energy + Delta-G solvation = -29564.309417 eV Core-core repulsion = 25363.237225 eV Total energy + Delta-G solvation = -4201.072192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.57009 -39.85278 -38.85595 -37.35656 -35.57151 -34.37826 -33.83975 -32.95477 -31.31987 -31.02700 -29.53427 -28.22262 -27.83919 -25.99922 -25.36645 -23.85580 -22.28105 -21.84793 -20.61107 -20.09542 -19.11629 -18.12722 -17.86626 -17.20117 -16.61687 -16.26510 -15.90667 -15.59349 -14.96583 -14.77186 -14.70340 -14.38972 -14.26121 -14.11116 -13.59229 -13.49130 -13.33047 -13.28166 -13.11690 -13.05927 -12.87676 -12.81840 -12.32641 -12.31500 -11.91359 -11.81012 -11.48880 -11.26383 -11.24290 -11.13470 -11.01727 -10.96162 -10.80009 -10.47150 -10.24776 -10.24144 -9.50029 -9.28785 -8.83388 -8.51678 -8.01962 -7.90709 -6.45102 -3.85937 0.68390 2.22488 2.26451 2.97860 3.08763 3.17039 3.23199 3.27213 3.70676 3.86193 3.91193 4.20700 4.54061 4.59688 4.61899 4.90002 5.02542 5.07450 5.07742 5.15536 5.18969 5.21981 5.38860 5.40999 5.44037 5.48194 5.50230 5.52075 5.66718 5.71601 5.72901 5.81188 5.84993 5.86995 5.94496 6.10385 6.14623 6.23743 6.30204 6.52985 7.17207 7.28085 7.29376 7.51664 7.52001 7.97666 8.02595 8.58245 9.14763 9.50897 10.02717 10.72556 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.002795 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.465536 B =10014.676523 C =12020.446181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.223 3.777 3 N -0.493 5.493 4 C 0.078 3.922 5 C -0.079 4.079 6 C -0.117 4.117 7 C 0.608 3.392 8 O -0.526 6.526 9 N -0.700 5.700 10 C 0.130 3.870 11 C 0.063 3.937 12 H 0.090 0.910 13 C -0.186 4.186 14 N -0.512 5.512 15 C 0.016 3.984 16 C 0.045 3.955 17 C 0.443 3.557 18 O -0.577 6.577 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 O -0.182 6.182 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.417 0.583 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.021 0.979 44 H 0.087 0.913 45 H 0.051 0.949 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.559 14.732 -9.131 18.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.018 3.982 3 N -0.224 5.224 4 C -0.046 4.046 5 C -0.136 4.136 6 C -0.172 4.172 7 C 0.394 3.606 8 O -0.405 6.405 9 N -0.350 5.350 10 C 0.006 3.994 11 C -0.047 4.047 12 H 0.108 0.892 13 C -0.245 4.245 14 N -0.235 5.235 15 C -0.132 4.132 16 C -0.087 4.087 17 C 0.229 3.771 18 O -0.462 6.462 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 O -0.069 6.069 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.254 0.746 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.039 0.961 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.385 16.342 -8.699 19.584 hybrid contribution -0.109 -2.249 0.312 2.273 sum 6.276 14.093 -8.388 17.561 Atomic orbital electron populations 1.20414 0.80720 1.05855 1.05111 1.26572 0.96733 0.78568 0.96361 1.70346 1.01582 1.29984 1.20520 1.22043 0.93480 0.91263 0.97828 1.20366 0.92266 0.97406 1.03541 1.22857 0.82549 0.95071 1.16766 1.16287 0.85364 0.81757 0.77236 1.90831 1.23736 1.74107 1.51844 1.45761 1.11650 1.04760 1.72845 1.21493 0.87054 0.88298 1.02512 1.22054 0.93101 0.93513 0.95992 0.89237 1.22400 0.98621 1.00706 1.02769 1.61820 1.34951 1.24444 1.02321 1.22604 0.97759 0.99935 0.92857 1.21876 0.97250 0.89176 1.00356 1.19721 0.86011 0.84168 0.87242 1.90490 1.67776 1.39006 1.48891 1.41859 1.32874 1.10400 1.34903 1.19635 1.11359 0.97766 1.14120 0.87997 1.25253 0.99137 0.95059 0.98436 1.69596 1.42701 1.02214 1.39832 0.85931 0.80640 0.77176 0.80554 1.19874 1.20978 1.19932 1.84498 1.16079 1.37159 1.69138 0.88411 0.88487 0.87750 0.90152 0.90578 0.88663 0.74584 0.90903 0.90737 0.91558 0.91741 0.91826 0.92159 0.88589 0.96058 0.89464 0.93121 0.77528 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.01 0.38 -0.07 16 2 C 0.22 2.65 8.32 -12.79 -0.11 2.54 16 3 N -0.49 -6.56 11.26 -7.07 -0.08 -6.64 16 4 C 0.08 1.06 7.16 -82.47 -0.59 0.46 16 5 C -0.08 -0.86 9.87 36.01 0.36 -0.50 16 6 C -0.12 -1.65 7.18 -36.84 -0.26 -1.92 16 7 C 0.61 8.60 7.79 -12.83 -0.10 8.50 16 8 O -0.53 -8.11 14.79 5.20 0.08 -8.03 16 9 N -0.70 -8.99 5.38 -61.60 -0.33 -9.33 16 10 C 0.13 1.47 4.69 -4.04 -0.02 1.45 16 11 C 0.06 0.70 2.50 -67.71 -0.17 0.53 16 12 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 13 C -0.19 -1.81 8.50 37.16 0.32 -1.49 16 14 N -0.51 -7.61 3.93 -236.33 -0.93 -8.54 16 15 C 0.02 0.25 8.45 60.07 0.51 0.76 16 16 C 0.04 0.73 4.89 -4.98 -0.02 0.71 16 17 C 0.44 9.94 7.47 -10.99 -0.08 9.86 16 18 O -0.58 -14.86 13.91 5.55 0.08 -14.78 16 19 N -0.56 -13.79 5.29 -10.97 -0.06 -13.85 16 20 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 21 H 0.10 2.91 7.16 -52.48 -0.38 2.53 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.09 13.05 55.50 0.72 -23.36 16 24 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 O -0.18 -2.48 10.57 4.45 0.05 -2.43 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.10 6.47 -51.93 -0.34 0.76 16 35 H 0.42 5.59 7.94 -40.82 -0.32 5.27 16 36 H 0.07 0.87 6.70 -51.93 -0.35 0.53 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.67 6.75 -51.93 -0.35 0.32 16 39 H 0.06 0.65 6.39 -51.93 -0.33 0.32 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 42 H 0.10 1.85 5.82 -51.93 -0.30 1.55 16 43 H 0.02 0.29 6.28 -51.93 -0.33 -0.03 16 44 H 0.09 1.29 8.00 -51.93 -0.42 0.87 16 45 H 0.05 0.77 6.94 -51.93 -0.36 0.41 16 46 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 47 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -32.60 387.68 -6.33 -38.93 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -6.64 Total: 13.45 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: -0.04 Total: 13.06 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.67 Total: -61.71 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: 0.20 Total: -25.24 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.60 -6.33 -38.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329408214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.447 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds