Wall clock time and date at job start Tue Mar 31 2020 21:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30617 * 125.42518 * 2 1 4 4 C 1.33687 * 108.99283 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.27158 * 180.02562 * 4 3 2 6 6 C 1.36340 * 107.45658 * 0.02562 * 4 3 2 7 7 C 1.46725 * 126.64313 * 179.97438 * 6 4 3 8 8 O 1.21683 * 119.99964 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99603 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99669 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47051 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46505 * 64.99900 * 11 10 9 13 13 C 1.52997 * 109.47127 * 185.00029 * 11 10 9 14 14 N 1.46894 * 109.47224 * 305.00575 * 11 10 9 15 15 C 1.46902 * 110.99790 * 298.94884 * 14 11 10 16 16 C 1.46896 * 111.00342 * 175.00014 * 14 11 10 17 17 C 1.50695 * 109.47619 * 189.99958 * 16 14 11 18 18 O 1.21286 * 119.99843 * 359.97438 * 17 16 14 19 19 N 1.34776 * 120.00467 * 180.02562 * 17 16 14 20 20 C 1.37089 * 120.00385 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00257 * 359.97438 * 20 19 17 22 22 C 1.38957 * 120.00040 * 179.97438 * 20 19 17 23 23 N 1.31405 * 119.99968 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99986 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47186 * 60.00291 * 24 22 20 26 26 H 1.48500 * 109.47234 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47148 * 300.00649 * 24 22 20 28 28 O 1.33662 * 125.42162 * 180.28620 * 2 1 3 29 29 H 1.09000 * 109.47405 * 90.02209 * 1 2 3 30 30 H 1.08996 * 109.47271 * 210.02729 * 1 2 3 31 31 H 1.09007 * 109.46847 * 330.02487 * 1 2 3 32 32 H 1.09000 * 109.47084 * 269.97779 * 5 4 3 33 33 H 1.09001 * 109.47035 * 29.97791 * 5 4 3 34 34 H 1.08997 * 109.47140 * 149.97659 * 5 4 3 35 35 H 0.96996 * 120.00429 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.46773 * 60.00404 * 10 9 7 37 37 H 1.09000 * 109.47434 * 300.00313 * 10 9 7 38 38 H 1.09002 * 109.47153 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.46832 * 60.00321 * 13 11 10 40 40 H 1.09004 * 109.47261 * 300.00303 * 13 11 10 41 41 H 1.09003 * 109.46808 * 60.00632 * 15 14 11 42 42 H 1.09004 * 109.47176 * 180.02562 * 15 14 11 43 43 H 1.08994 * 109.47263 * 300.00333 * 15 14 11 44 44 H 1.09006 * 109.46837 * 310.00141 * 16 14 11 45 45 H 1.09003 * 109.47200 * 69.99229 * 16 14 11 46 46 H 0.97011 * 119.99567 * 359.97438 * 19 17 16 47 47 H 0.96997 * 120.00137 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5464 0.6862 0.0006 5 6 4.7453 1.5994 0.0013 6 6 3.5708 -0.6770 0.0003 7 6 4.7635 -1.5315 0.0003 8 8 5.8718 -1.0292 0.0009 9 7 4.6315 -2.8728 0.0006 10 6 5.8224 -3.7260 -0.0001 11 6 5.3968 -5.1957 0.0011 12 1 4.8777 -5.4243 -0.9297 13 6 6.6354 -6.0852 0.1261 14 7 4.4985 -5.4445 1.1364 15 6 5.1738 -5.1701 2.4119 16 6 3.9748 -6.8165 1.1026 17 6 2.8790 -6.9613 2.1268 18 8 2.5653 -6.0149 2.8173 19 7 2.2480 -8.1429 2.2762 20 6 1.2514 -8.2748 3.2083 21 1 0.9721 -7.4320 3.8232 22 6 0.6005 -9.4928 3.3619 23 7 0.9407 -10.5184 2.6141 24 14 -0.7569 -9.6728 4.6325 25 1 -1.8516 -8.7173 4.3260 26 1 -1.2860 -11.0599 4.5985 27 1 -0.2119 -9.3842 5.9834 28 8 2.2817 -1.0892 -0.0054 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5135 32 1 5.0350 1.8194 -1.0262 33 1 4.4946 2.5276 0.5148 34 1 5.5732 1.1116 0.5158 35 1 3.7480 -3.2732 0.0005 36 1 6.4175 -3.5198 0.8895 37 1 6.4165 -3.5201 -0.8905 38 1 6.3322 -7.1322 0.1265 39 1 7.1544 -5.8565 1.0569 40 1 7.3019 -5.9005 -0.7164 41 1 5.4901 -4.1273 2.4385 42 1 4.4865 -5.3628 3.2357 43 1 6.0458 -5.8169 2.5078 44 1 3.5756 -7.0286 0.1107 45 1 4.7782 -7.5177 1.3284 46 1 2.4991 -8.9000 1.7241 47 1 0.4866 -11.3688 2.7216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329408214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:21 Heat of formation + Delta-G solvation = -70.416740 kcal Electronic energy + Delta-G solvation = -29565.481847 eV Core-core repulsion = 25363.237225 eV Total energy + Delta-G solvation = -4202.244623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.54103 -40.97145 -40.30429 -38.78037 -36.57131 -35.96634 -35.28504 -33.80833 -33.25485 -32.12104 -30.30544 -29.40229 -28.99001 -27.01624 -26.88779 -25.33443 -23.21114 -22.82152 -21.64337 -21.33327 -20.68390 -19.79460 -19.15544 -18.19360 -17.97388 -17.29739 -17.02474 -16.80605 -16.54926 -16.27886 -15.92586 -15.68771 -15.47329 -15.24380 -14.99451 -14.71966 -14.32674 -14.21914 -14.07350 -13.97397 -13.80090 -13.66046 -13.51049 -13.43939 -13.18076 -13.07010 -12.89976 -12.80880 -12.44693 -12.39431 -12.27462 -12.12291 -12.06917 -12.02967 -11.78506 -11.42504 -11.29274 -10.31519 -10.25927 -9.97445 -9.80185 -9.18382 -8.44719 -5.92651 -0.31306 1.26124 1.33322 1.40026 1.42041 1.52329 1.92606 2.09528 2.10928 2.29248 2.75477 2.87382 3.22740 3.44761 3.60990 3.65047 3.71279 4.05331 4.25126 4.27783 4.28876 4.32711 4.35250 4.54229 4.56390 4.58699 4.59846 4.61454 4.65587 4.66826 4.73562 4.74240 4.85449 4.86810 5.01041 5.07165 5.17885 5.24224 5.30285 5.35999 5.42709 5.87922 6.06861 6.19012 6.25944 6.51839 6.63670 6.92249 7.15973 7.60374 8.16640 8.72472 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.002795 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.465536 B =10014.676523 C =12020.446181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.227 3.773 3 N -0.514 5.514 4 C 0.073 3.927 5 C -0.075 4.075 6 C -0.144 4.144 7 C 0.607 3.393 8 O -0.544 6.544 9 N -0.697 5.697 10 C 0.131 3.869 11 C 0.069 3.931 12 H 0.105 0.895 13 C -0.181 4.181 14 N -0.526 5.526 15 C 0.026 3.974 16 C 0.059 3.941 17 C 0.442 3.558 18 O -0.614 6.614 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.989 3.011 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.274 1.274 28 O -0.195 6.195 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.414 0.586 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.039 0.961 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.395 0.605 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.656 14.660 -10.289 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.022 3.978 3 N -0.245 5.245 4 C -0.052 4.052 5 C -0.132 4.132 6 C -0.199 4.199 7 C 0.393 3.607 8 O -0.425 6.425 9 N -0.346 5.346 10 C 0.008 3.992 11 C -0.039 4.039 12 H 0.123 0.877 13 C -0.240 4.240 14 N -0.250 5.250 15 C -0.122 4.122 16 C -0.072 4.072 17 C 0.229 3.771 18 O -0.500 6.500 19 N -0.213 5.213 20 C -0.460 4.460 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.813 3.187 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.199 1.199 28 O -0.083 6.083 29 H 0.139 0.861 30 H 0.122 0.878 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.251 0.749 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.130 0.870 45 H 0.088 0.912 46 H 0.229 0.771 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.505 16.260 -9.879 20.107 hybrid contribution -0.151 -2.133 0.647 2.234 sum 6.354 14.127 -9.232 18.032 Atomic orbital electron populations 1.20728 0.77510 1.06921 1.06894 1.27631 0.98266 0.77880 0.94045 1.70389 1.01652 1.30580 1.21834 1.22493 0.94313 0.91550 0.96795 1.20407 0.91091 0.97355 1.04364 1.22909 0.82838 0.95448 1.18713 1.16337 0.85233 0.82089 0.77053 1.90808 1.24313 1.74442 1.52966 1.45800 1.11985 1.04544 1.72285 1.21599 0.86555 0.88038 1.03009 1.22112 0.93376 0.93653 0.94782 0.87730 1.22359 0.97994 1.00068 1.03591 1.61733 1.36611 1.23507 1.03134 1.22396 0.97148 1.00681 0.91983 1.21733 0.95655 0.90675 0.99178 1.20811 0.86184 0.82805 0.87259 1.90475 1.68972 1.40085 1.50434 1.41927 1.33075 1.11336 1.34983 1.19583 1.13240 0.97689 1.15441 0.90423 1.25976 1.00822 0.94416 1.00004 1.69656 1.43450 1.02494 1.40638 0.85047 0.77964 0.77597 0.78100 1.19660 1.19622 1.19913 1.84493 1.16155 1.37967 1.69644 0.86068 0.87777 0.86196 0.88904 0.89260 0.89514 0.74926 0.91592 0.88993 0.91540 0.92174 0.89532 0.91616 0.92852 0.94313 0.87013 0.91162 0.77079 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 10.51 71.24 0.75 -0.04 16 2 C 0.23 5.23 8.32 88.29 0.73 5.97 16 3 N -0.51 -13.39 11.26 -291.06 -3.28 -16.67 16 4 C 0.07 1.95 7.16 41.83 0.30 2.25 16 5 C -0.08 -1.61 9.87 71.24 0.70 -0.90 16 6 C -0.14 -4.10 7.18 24.05 0.17 -3.93 16 7 C 0.61 17.15 7.79 86.46 0.67 17.82 16 8 O -0.54 -16.72 14.79 -4.29 -0.06 -16.78 16 9 N -0.70 -17.49 5.38 -467.03 -2.51 -20.01 16 10 C 0.13 2.74 4.69 86.38 0.40 3.15 16 11 C 0.07 1.38 2.50 44.92 0.11 1.49 16 12 H 0.10 1.84 8.03 -2.39 -0.02 1.82 16 13 C -0.18 -2.95 8.50 71.98 0.61 -2.34 16 14 N -0.53 -14.99 3.93 -901.63 -3.54 -18.53 16 15 C 0.03 0.79 8.45 127.69 1.08 1.87 16 16 C 0.06 1.84 4.89 85.56 0.42 2.25 16 17 C 0.44 19.99 7.47 87.66 0.66 20.65 16 18 O -0.61 -32.50 13.91 -3.05 -0.04 -32.55 16 19 N -0.58 -28.53 5.29 -306.99 -1.62 -30.16 16 20 C -0.33 -18.32 9.68 84.04 0.81 -17.51 16 21 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 23 N -0.92 -48.91 13.05 21.66 0.28 -48.63 16 24 Si 0.99 42.33 29.55 68.60 2.03 44.36 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 O -0.20 -5.32 10.57 -7.00 -0.07 -5.40 16 29 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 2.01 6.47 -2.39 -0.02 1.99 16 35 H 0.41 10.95 7.94 -92.71 -0.74 10.21 16 36 H 0.07 1.50 6.70 -2.39 -0.02 1.48 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 1.11 6.75 -2.39 -0.02 1.10 16 39 H 0.06 1.05 6.39 -2.39 -0.02 1.03 16 40 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.07 1.91 6.44 -2.39 -0.02 1.89 16 42 H 0.05 2.11 5.82 -2.38 -0.01 2.10 16 43 H 0.04 1.03 6.28 -2.39 -0.02 1.01 16 44 H 0.11 3.01 8.00 -2.38 -0.02 2.99 16 45 H 0.07 1.97 6.94 -2.39 -0.02 1.95 16 46 H 0.40 18.62 7.90 -92.70 -0.73 17.88 16 47 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -72.09 387.68 -1.37 -73.46 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: -0.44 Total: 40.36 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 7.89 Total: 30.55 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -10.67 Total: -134.00 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -0.18 Total: -54.73 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -72.09 -1.37 -73.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329408214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.043 kcal (2) G-P(sol) polarization free energy of solvation -72.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds